KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:56 2014 Check: 00 .. Name: ENSP00000304769/1-595 Len: 604 Check: 9938 Weight: 1.00 Name: ENSBTAP00000026440/1-591 Len: 604 Check: 2855 Weight: 1.00 Name: ENSTTRP00000002496/1-592 Len: 604 Check: 2229 Weight: 1.00 Name: bmy_21017T0/1-501 Len: 604 Check: 5124 Weight: 1.00 Name: BACU010911/1-267 Len: 604 Check: 5659 Weight: 1.00 // 1 50 ENSP00000304769/1-595 MRETLEALSS LGFSVGQPEM APQSEPREGS HNAQEQMSSS REERALGVCS ENSBTAP00000026440/1-591 MRETLEALSS LGLSVGQPEM TPQSEPGEQS HDAQERMSPP QEQRVLGTSS ENSTTRP00000002496/1-592 MRETFEALRS LGLSVGQPEM APQSEPGEES QNAQEQMSPP REERALGKCS bmy_21017T0/1-501 ---------- ---------- ---------- ---------- ---------- BACU010911/1-267 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000304769/1-595 GHEAPTPEEG AHTEQAEAPC R-GQACSAQK AQPVGTCPGE EWMIRKVKV- ENSBTAP00000026440/1-591 GREAPRPEKG ARTEQAETPC REDQVCAPRK PEPTGSCPGD EWMIRKVKVE ENSTTRP00000002496/1-592 GREAPRPEEG APTEQAEAPC RGGRACAPRK AEPMGSCPGE EWMIRQVKV- bmy_21017T0/1-501 ---------- ---------- ---------- ---MGSCPGE EWMLRKVKV- BACU010911/1-267 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000304769/1-595 -EDEDQEAEE EVEWPQHLSL LPSPFPAPDL GHLAAAYKLE ---PGAPGAL ENSBTAP00000026440/1-591 EEEEDREAHK EAEWPQHLAL RPSPFPPPDL GSLAAAYKLE ---SGAPGTL ENSTTRP00000002496/1-592 -EAEDHEAGE EVEWPQHLSL LPSPLPAPDL GPLAAAYKLE PGAPGAPGAL bmy_21017T0/1-501 -EEEARQAEE EVEWPQRLSL LPSPFPAPDL GPLAAAYKLE ---PGAPGPL BACU010911/1-267 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000304769/1-595 SGLALSGWGP M-PEKPYGCG ECERRFRDQL TLRLHQRLHR GEGPCACPDC ENSBTAP00000026440/1-591 GGLALAGWVP TASEKPYGCG ECERRFRDQL TLRLHQRLHR GEGPCACPDC ENSTTRP00000002496/1-592 GGLALAGWVP T-SEKPYGCG ECERRFRDQL TLRLHQRLHR GEGPCACPDC bmy_21017T0/1-501 GGLALAGWVP T-SEKPYGCG ECERRFRDQL TLRLHQRLHR GEGPCACPDC BACU010911/1-267 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000304769/1-595 GRSFTQRAHM LLHQRSHRGE RPFPCSECDK RFSKKAHLTR HLRTHTGERP ENSBTAP00000026440/1-591 GRSFTQRAHL LLHQRSHRGE RPFPCSECDK RFSKKAHLTR HLRTHTGERP ENSTTRP00000002496/1-592 GRSFTQRAHM LLHQRSHRGE RPFPCSECGK RFSKKAHLTR HLRTHTGERP bmy_21017T0/1-501 GRSFTQRAHM LLHERSHRGE RPFPCSECGK RFSKKAHLTR HLRTHTGERP BACU010911/1-267 ---------M LLHERSHRGE RPFPCSECGK RFSKKAHLTR HLRTHTGERP 251 300 ENSP00000304769/1-595 YPCAECGKRF SQKIHLGSHQ KTHTGERPFP CTECEKRFRK KTHLIRHQRI ENSBTAP00000026440/1-591 YPCAECGKRF SQKIHLGSHQ KTHTGERPFP CPECEKRFRK KTHLIRHQRI ENSTTRP00000002496/1-592 FPCAECGKRF SQKIHLGSHQ KTHTGERPFP CPECEKRFRK KTHLIRHQRI bmy_21017T0/1-501 YPCAECGKRF SQKIHLGSHQ KTHTGERPFP CPECEKRFRK KTHLIRHQRI BACU010911/1-267 YPCAECGKRF SQKIHLGSHQ KTHTGERPFP CPECEKRFRK KTHLIRHQRI 301 350 ENSP00000304769/1-595 HTGERPYQCA QCARSFTHKQ HLVRHQRVHQ TAGPARPSPD SSASPHSTAP ENSBTAP00000026440/1-591 HTGERPYQCA QCARSFTHKQ HLVRHQRVHA AAGRTPPSPG APASPTSSAS ENSTTRP00000002496/1-592 HTGERPYQCA QCARSFTHKQ HLVRHQRVHE AAGRAPSSPD ASASPTSPAP bmy_21017T0/1-501 HTGERPYQCA QCARSFTHKQ HLVRHQRVHE AAGRAPSSPG APFSPTSPAP BACU010911/1-267 HTGERPYQCT QCARSFTHKQ HLVRHQRVHE AAGRAPSSPD APFSPTSPAP 351 400 ENSP00000304769/1-595 SPTPSFPGPK PFACSDCGLS FGWKKNLATH QCLHRSEGRP FGCDECALGA ENSBTAP00000026440/1-591 SPTASPPGPK PFSCSHCGLS FGWKKNLTTH QRLHSGEERP FGCDECALGA ENSTTRP00000002496/1-592 SPTPSPPGPK PFSCSDCGLS FGWKKNLAMH QRLHCDEGRP FGCDECTLGA bmy_21017T0/1-501 SPTPSPPGPK PFSCSDCGLS FGWKKNLAMH QRLHRGEGRA FGCDECALGA BACU010911/1-267 SPTPSPPGPK PFS------- ---------- ---------- ---------- 401 450 ENSP00000304769/1-595 TVDAPAA-KP LASAPGGPGC GPGSDPVVPQ RAPSGERSFF CPDCGRGFSH ENSBTAP00000026440/1-591 PVDPAAP-EP LACAPRGTPA LPG------- -TPGGERSFL CPECGRSFAH ENSTTRP00000002496/1-592 TVDPAAATEP SACAPRSTPA PPG------- -APASQRSFL CPDCGRGFAH bmy_21017T0/1-501 TVDPAAATEP LAC------A PPG------- -APASQRSFL CPDCGRAFAH BACU010911/1-267 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000304769/1-595 GQHLARHPRV HTGERPFACT QCDRRFGSRP NLVAHSRAHS GARPFACAQC ENSBTAP00000026440/1-591 GQHLARHRRV HTGERPFACA QCGRRFGSRP NLVAHSRAHS GARPFACAQC ENSTTRP00000002496/1-592 GQHLARHRRV HTGERPFACA QCGRRFGSRP NLVAHSRAHS GARPFACAQC bmy_21017T0/1-501 GQHLARHRRV HTGERPFACA QCGRRFGSRP NLVAHSRAHS GARPFACAQC BACU010911/1-267 ---------- ---------- ---------- ---------- -ARPFACAQC 501 550 ENSP00000304769/1-595 GRRFSRKSHL GRHQAVHTGS RPHACAVCAR SFSSKTNLVR HQAIHTGSRP ENSBTAP00000026440/1-591 GRRFSRKSHL GRHQAVHTGS RPHACAVCAR SFSSKTNLVR HQAVHTGSRP ENSTTRP00000002496/1-592 GRRFSRKSHL GRHQAVHTGS RPHACAVCAR SFSSKTNLVR HQAVHTGSRP bmy_21017T0/1-501 GRRFSRKSHL GRHQAVHTGS RPHACAVCAR SFSSKTNLVR HQAVHTGSRP BACU010911/1-267 GRRFSRKSHL GRHQAVHTGS RPHACAVCAR SFSSKTNLVR HQAVHTGSRP 551 600 ENSP00000304769/1-595 FSCPQCGKSF SRKTHLVRHQ LIHGE-AAHA APDAALAAPA WSAPPEVAPP ENSBTAP00000026440/1-591 FPCPQCGKSF SRKTHLVRHQ RIHGG-AAHP ASGSDLSSPA WPTSTDVTAP ENSTTRP00000002496/1-592 FSCPQCAKSF SRKTHLARHQ RIHGG-AAHP TSESNLLAPV WPTPTEVETS bmy_21017T0/1-501 FSCPQCGKSF SRKTHLARHQ RIHGGAAAHP TSESDLLAPA WPTPTEGAAS BACU010911/1-267 FSCPQCGKSF SRKTHLARHQ RIHGGTAADP TSESDLLAPA WPTPTEGAAS 601 650 ENSP00000304769/1-595 PLFF ENSBTAP00000026440/1-591 ALFF ENSTTRP00000002496/1-592 PLFF bmy_21017T0/1-501 PLFF BACU010911/1-267 PLFF