KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:00 2014 Check: 00 .. Name: ENSP00000337691/1-544 Len: 728 Check: 5659 Weight: 1.00 Name: ENSTTRP00000014400/1-405 Len: 728 Check: 3425 Weight: 1.00 Name: ENSBTAP00000026467/1-536 Len: 728 Check: 1229 Weight: 1.00 Name: bmy_07595T0/1-494 Len: 728 Check: 9803 Weight: 1.00 Name: BACU001475/1-399 Len: 728 Check: 4966 Weight: 1.00 // 1 50 ENSP00000337691/1-544 MCT--VVDPR I--------- ---------- ---VRRYLLR RQLGQGAYGI ENSTTRP00000014400/1-405 ICA-AEMDRH V--------- ---------- ---AQRYLLR LRFGKGAYSI ENSBTAP00000026467/1-536 MCT-AEVDRH V--------- ---------- ---AQRYLLK RRLGKGAYGI bmy_07595T0/1-494 MCPRVKAHKR LLPEEVWRAF RSPLSPDSSR PSSSRRCNSR LRNPDGIEGI BACU001475/1-399 MCA-AEMDRH V--------- ---------- ---AQRYLLK QRLGSGAYGI 51 100 ENSP00000337691/1-544 VWKAVDRRTG EVVAIKKIFD AFRDKTDA-- ---------- ---------- ENSTTRP00000014400/1-405 VWKAVDQRTG EVVAIKKIFD AFKDKTDA-- ---------- ---------- ENSBTAP00000026467/1-536 VWKAVDRRTG EVVAIKKIFD AFKDKTDA-- ---------- ---------- bmy_07595T0/1-494 VWKAVGQRTG EVVAIKKIFD AFKDKTDAQA HLEAQSQQVS GISQSTAPCD BACU001475/1-399 VWKAVGQRSG EVVAIKKIFD AFKDKTDA-- ---------- ---------- 101 150 ENSP00000337691/1-544 ---------- ---------- ---------- ------QRTF REITLLQEFG ENSTTRP00000014400/1-405 ---------- ---------- ---------- ------QRTF REIMPLREFG ENSBTAP00000026467/1-536 ---------- ---------- ---------- ------QRTF REITLLQEFG bmy_07595T0/1-494 LMVQRVCRWR ASVPSHPLQT RASFLLCTHA HVAVSFQRTF REIMLLQEFG BACU001475/1-399 ---------- ---------- ---------- ------QRTF REIMLLQEFG 151 200 ENSP00000337691/1-544 DHPNIISLLD VIRAENDRDI YLVFE----- -----FMDTD LNAVIRKGGL ENSTTRP00000014400/1-405 DRPNIIRLPG VIRAENDRDI YLVFESMGPP TDLH-TPDTD PNAVICKGTL ENSBTAP00000026467/1-536 DHPNIVRLLD VIPAENDRDI YLVFE----- -----SMDTD LNAVICKGTL bmy_07595T0/1-494 DHPNIVRLLD VIRAENDRDI YLLLSLWVHQ TDLHTPPDTD LNAVICKGTL BACU001475/1-399 DHPNIVHLLD VIRAENDRDI YLLFE----- -----SMDTD RNAVICKGTL 201 250 ENSP00000337691/1-544 LQDVHVRSIF YQLLRATRFL HSGHVVHRDQ KPSNVLLDAN CTVKLCDFGL ENSTTRP00000014400/1-405 LKDSHKRYVF HQLLRATKFI HSG-VIHQDQ KPSNVLLDTS CLVKLCDFGL ENSBTAP00000026467/1-536 LKDTHKRYIF YQLLRATKFI HSGRVIHRDQ KPSNVLLDAS CLVKLCDFGL bmy_07595T0/1-494 LKDTHKRYIF YQLMRATKFI HSGRVIHRDQ KPSNVLLDAS CLVKLCDFGL BACU001475/1-399 LKDTHKRYIF YQLLRATKFI HSGRVIHRDQ KPSNVLLDAS CLVKLCDFGL 251 300 ENSP00000337691/1-544 ARSLGDLPEG PEDQAVTEYV ATRWYRAPEV LLSSHRYTL- ---------- ENSTTRP00000014400/1-405 AHPLSGLPEG PEGHALTEHV ATRWY-APEV FLSSSWYTP- ---------- ENSBTAP00000026467/1-536 ARPLSGLPEV PEGHALTEYV ATRWYRAPEV LLSSSWYTP- ---------- bmy_07595T0/1-494 AHSLSGLPEG PEGHALMEYV AMRWYRALEV LLSSSWYTP- ---------- BACU001475/1-399 AHSLSGLPEG PEGHALMEYV ATRWYRALEV LLSSSWYTPG VDMWSLGCIL 301 350 ENSP00000337691/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014400/1-405 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026467/1-536 ---------- ---------- ---------- ---------- ---------- bmy_07595T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001475/1-399 GEMLAGRPLF PGASTLHQLE LILEAIPPPS EEERRSLNGS EAVAGDPPEL 351 400 ENSP00000337691/1-544 ---------- ---------- ---------- -GVDMWSLGC ILGEMLRGRP ENSTTRP00000014400/1-405 ---------- ---------- ---------- -GVDMWSLGR ILGEMLAGRP ENSBTAP00000026467/1-536 ---------- ---------- ---------- -GVDMWSLGC ILGEMLRGRP bmy_07595T0/1-494 ---------- ---------- ---------- -GVDMWSLGC ILGEMLAGRP BACU001475/1-399 PRLLRPLPDF LALGSGSGSS AVQRLGSRYT PGVDMWSLGC ILGEMLAGRP 401 450 ENSP00000337691/1-544 LFPGTSTLHQ LELILETIPP PSEEDLLALG SGCRASVLHQ LGSRPRQTLD ENSTTRP00000014400/1-405 L-PGTSTL-Q LGLILEGIPP PSEDDLLALG AGSGASVVQR LGSRPGPTLD ENSBTAP00000026467/1-536 LFPGTSTLHQ LELILEAIPP PSKEDLLALG SGCNISVLQH LGSRPRQTLD bmy_07595T0/1-494 LFPGASTLLQ LELILEAIPP PSEEDLLALG SGSGASVVQR LGSRPGQTLD BACU001475/1-399 LFPGASTLHQ LELILEAIPP PSEEDFLALG SGSGSSAVQR LGSRPGQTLD 451 500 ENSP00000337691/1-544 ALLPPDTSPE ALDLLRRLLV FAPDKRLSAT QALQHPYVQR FHCPSDEWAR ENSTTRP00000014400/1-405 DLLPPDTPPE VLDHREP-LV FAPDKRLSAA QALQHPYVQR FHCPARECTL ENSBTAP00000026467/1-536 ALLPPDTPPD ALDLLSRLLV FAPHKRLSAA QALQHPYVQR FHCPAREWTL bmy_07595T0/1-494 ALLPPDTPAE ALDLRKRLLV FAPDKRLSAA QARQHPYVQR FHCPARECAL BACU001475/1-399 TFLPPDTPAE ALDLRKRLLV FAPDKRLSAA QARQHPYVQR ---------- 501 550 ENSP00000337691/1-544 EADVRPRAHE GVQLSVPEYR SRVYQMILEC GGSSGTSREK GPEGVSPSQA ENSTTRP00000014400/1-405 EADVRLPVHE GAQLSATEYR SRLYQMILER LGNGRVPRET GLGGVPTPPA ENSBTAP00000026467/1-536 GGDVRLPVQE GAQLSAAEYR RRLHQMILER RGHGRLSKET GLGGGPPTPE bmy_07595T0/1-494 EADVRPPVHE GAQISATEYR SRLYQQ--AC LVLEHIRSQL GLLQAVPRVV BACU001475/1-399 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000337691/1-544 HLHKPRADPQ LPSRTPVQGP RPRPQSSPGH DPAEHESPRA AKNVPRQNSA ENSTTRP00000014400/1-405 PPLKPRAAAK LPSGSPARKP GRRPRSNPGH GPA-H----- ---------- ENSBTAP00000026467/1-536 P------EAQ LPSGSPALNS GRRPRNNPGL GPV-HDALGG AQDPPRQNSA bmy_07595T0/1-494 LAGEGLVQCI CCLGASYRVT TFVALSQSGK RDKMGQRP-- ---------- BACU001475/1-399 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000337691/1-544 PLLQTALLGN GERPPGAKEA PPLTLSLVKP SGRGAAPSLT SQAAAQVANQ ENSTTRP00000014400/1-405 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026467/1-536 PLHQPPPPGG PGREAGPGGA T--SSSWVKP GVREAAPSLT SQAAAQVAVR bmy_07595T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001475/1-399 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000337691/1-544 ALIRGDWNRG GGVRVASVQQ VPPRLPPEAR PGRRMFSTSA LQGAQGGARA ENSTTRP00000014400/1-405 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026467/1-536 ALIRSDRNPG RGENAPGAPR VPPRSPGAAR PGRRMFGASA TQGAQGAARA bmy_07595T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001475/1-399 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000337691/1-544 LLGGYSQAYG TVCHSALGHL PLLEGHHV ENSTTRP00000014400/1-405 ---------- ---------- -------- ENSBTAP00000026467/1-536 TLGGYSQAYG TVCLSALGCL PLLPGPRA bmy_07595T0/1-494 ---------- ---------- -------- BACU001475/1-399 ---------- ---------- --------