KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:01 2014 Check: 00 .. Name: ENSTTRP00000007700/1-639 Len: 699 Check: 6867 Weight: 1.00 Name: BACU019404/1-628 Len: 699 Check: 6885 Weight: 1.00 Name: ENSP00000252136/1-625 Len: 699 Check: 1944 Weight: 1.00 Name: bmy_02437T0/1-681 Len: 699 Check: 7734 Weight: 1.00 Name: ENSBTAP00000026476/1-591 Len: 699 Check: 126 Weight: 1.00 // 1 50 ENSTTRP00000007700/1-639 MGDELDGEGR ACVGGPVQDG PTAPGSPAAP -PPS-----G EEQATGAGAA BACU019404/1-628 -------QGR SRVGGPDQDG RSAPGSPAAP GPQQ-----G EEQATGAGAA ENSP00000252136/1-625 MSENLDNEGP KPMESCGQES SSALSCPTVS VPPAAPAALE EVEKEGAGAA bmy_02437T0/1-681 RLSAVSTQGR ARVGGPGQDG PSAPGSPAAP GPQQ-----G EEQATGAGAA ENSBTAP00000026476/1-591 MGDELDSEGP AHVGDPCRDG AEAPG----- -PRR-----E EEPAAAAGPA 51 100 ENSTTRP00000007700/1-639 -GPGAQPGPY GYIRAGLFTS EIFKLELQNV PRHASFSDVR RFLGRFGLQP BACU019404/1-628 -GPGAQPGPY SYIRAGLFTS EIFKLELQNV PRHASFSDVR RFLGRFGLQP ENSP00000252136/1-625 TGPGPQPGLY SYIRDDLFTS EIFKLELQNV PRHASFSDVR RFLGRFGLQP bmy_02437T0/1-681 -GPGAQPGPY SYIRAGLFTS EIFKLELQNV PRHASFSDVR RFLGRFGLQP ENSBTAP00000026476/1-591 -G----PGPY GYIRAGLFTS EVFKLELQNV PRHASFSDVR RFLGRFGLQP 101 150 ENSTTRP00000007700/1-639 HKTKLFGQPP CAFVTFRSAA ERDKALCVLH GALWKGRPLS VRLARPKADP BACU019404/1-628 HKTKLFGQPP CAFVTFRSAA ERDKALCVLH GALWKGRPLS VRLARPKADP ENSP00000252136/1-625 HKTKLFGQPP CAFVTFRSAA ERDKALRVLH GALWKGRPLS VRLARPKADP bmy_02437T0/1-681 HKTKLFGQPP CAFVTFRSAA ERDKALCVLH GALWKGRPLS VRLARPKADP ENSBTAP00000026476/1-591 HKTKLFGQPP CAFVTFRSAA ERDKALCVLH GAVWKGRPLS ARLARPKADP 151 200 ENSTTRP00000007700/1-639 LARKRQREDQ GEPPTTPATC IADVVTPLWT MPYAEQLERK RLECEQVLQK BACU019404/1-628 LARKRQREDQ GEPPATPAPC IADVVTPLWT MPYAEQLERK RLECEQVLQK ENSP00000252136/1-625 MARRRRQEGE SEPPVTR--- VADVVTPLWT VPYAEQLERK QLECEQVLQK bmy_02437T0/1-681 LARKRQREDQ GEPPATPATC IADVVTPLWT MPYAEQLERK RLECEQVLQK ENSBTAP00000026476/1-591 LARKRRQEDR GELPAGPAAC VADVVTPLWA VPYEEQLERK RQECEQVLQK 201 250 ENSTTRP00000007700/1-639 LAKEIGSTNR ALLPWLLLQR HKHNKACCPL EGVRPSPQQT EYRNKCEFLV BACU019404/1-628 LAKEIGSTNR ALLPWLLLQR HKHNKACCPL EGVRPSPQQT EYRNKCEFLV ENSP00000252136/1-625 LAKEIGSTNR ALLPWLLEQR HKHNKACCPL EGVRPSPQQT EYRNKCEFLV bmy_02437T0/1-681 LAKEIGSTNR ALLPWLLLQR HKHNKACCPL EGVRPSPQQT EYRNKCEFLV ENSBTAP00000026476/1-591 LARELARTSI C-FHWPFL-- ---------- --------QT EYRNKCEFLV 251 300 ENSTTRP00000007700/1-639 GVGVDGEDNT VGCRLGKYKG GTCAVAAPFD TVHIPGATKQ VVKAFQEFIR BACU019404/1-628 GVGVDGEDNT VGCRLGKYKG GTCAVAAPFN TVHIPGATKQ VVKAFQEFIR ENSP00000252136/1-625 GVGVDGEDNT VGCRLGKYKG GTCAVAAPFD TVHIPEATKQ VVKAFQEFIR bmy_02437T0/1-681 GVGVDGEDNT VGCRLGKYKG GTCAVAAPFD TVHIPGATKQ VVKAFQEFIR ENSBTAP00000026476/1-591 GVGVDGEDNT VGCRLSKYKS GTCAVAAPFD TVHIPGATKQ VVRAFQEFIR 301 350 ENSTTRP00000007700/1-639 STPYSAYDPE TYSGHWKQLT VRISRRGQAM AIAYFHPQNL SPEELEGLKA BACU019404/1-628 STPYSAYDPE TYSGHWKQLT VRTSRRGQAM AIAYFHPQNL SPEELEGLKA ENSP00000252136/1-625 STPYSAYDPE TYTGHWKQLT VRTSRRHQAM AIAYFHPQKL SPEELAELKT bmy_02437T0/1-681 STPYSAYDPE TYSGHWKQLT VRTSRRGQAM AIAYFHPQNL SPEELEGLKA ENSBTAP00000026476/1-591 STPYSAYDPE TYSGHWKQLT VRTSRRGQAM AIAYFHPQNL SPEELAGLKT 351 400 ENSTTRP00000007700/1-639 SLAQHFMEGS GKTSGVTCLY FVEEGQRXXX X------XXX XXXXXXXXXX BACU019404/1-628 SLAQHFMEGP GKTSGVTCLY FVEEGQRLVA QVRLGGFLRG LVTPIDPPSR ENSP00000252136/1-625 SLAQHFTAGP GRASGVTCLY FVEEGQRKTP S------QEG L-----PLEH bmy_02437T0/1-681 SLAQHFMEGP GKTSGVTCLY FVEEGQRKTP S------QEG L-----PLEH ENSBTAP00000026476/1-591 SLAQYFMEGP GKASGVTCLY FVEEGQRKTP S------QEG L-----PLEH 401 450 ENSTTRP00000007700/1-639 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019404/1-628 LQKDPQPRGP ASGACGRGPV HP----RGPA GAEL----PD FPSRLLPGDQ ENSP00000252136/1-625 VAGDRCIHED LLGLTFRISP HAFFQVNTPA AEVLYTVIQD W-AQLDAGSM bmy_02437T0/1-681 VAGDQCIRED LLGLTFRISP HAFFQVNTPA AEVLYMLIQD W-AQLDAGST ENSBTAP00000026476/1-591 VAGDRCIRED VLGLTFRISP HAFFQVNTAA AEVLYTLIQD W-AQLDAGST 451 500 ENSTTRP00000007700/1-639 XXXXXXXXXX XXXXXXX--- ---------- ---------- ---------- BACU019404/1-628 IPGLRAGAAE RGEHPGSSPP SHSC------ ----VVTHSV MTPQENLRLF ENSP00000252136/1-625 VLDVCCGTGT IGLALAR--- ---------- ---------- ---------- bmy_02437T0/1-681 VLDVCCGTGT IGLALARVSP PTPVKSMLSP TPLLCRHPSC HDPPGEPQTV ENSBTAP00000026476/1-591 VLDVCCGTGT IGLALAR--- ---------- ---------- ---------- 501 550 ENSTTRP00000007700/1-639 ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019404/1-628 QILFRCPPRR SRGGEGRHQS DLFLLQKVKR VVGIELCQEA VEDARVNALD ENSP00000252136/1-625 ---------- ---------- ------KVKR VIGVELCPEA VEDARVNAQD bmy_02437T0/1-681 PDPLLLPPRR SRGGEGRHQS ALFLLQKVKR VVGIELCQEA VEDARVNALD ENSBTAP00000026476/1-591 ---------- ---------- ------KVKR VVGVELSQEA VEDARVNALD 551 600 ENSTTRP00000007700/1-639 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU019404/1-628 NG-------- ---------- ESQRASQWVA GPVCPSTRHL ---------- ENSP00000252136/1-625 NELSNVEFHC GRAEDLVPTL VSRLASQHLV AILDPPRAGL HSKVILAIRR bmy_02437T0/1-681 NELSNVEFHC GRAEDLVPAL VSRLASQQLT AVLDPPRAGL HSKVILAVRR ENSBTAP00000026476/1-591 NELSNVEFHC GRAEELVPAL VSRLASQQLV AILDPPRAGL HSKAVLAVRR 601 650 ENSTTRP00000007700/1-639 XXXXXXXXXX XXXXXXXXXX XXXLCRAPSN RVKGSPFQPV KAVAVDLFPQ BACU019404/1-628 ---------- --GPTQWLLG LMGLCRAPSN RVKGSPFRPV KAVAVDLFPQ ENSP00000252136/1-625 AKNLRRLLYV SCNPRAAMGN FVDLCRAPSN RVKGIPFRPV KAVAVDLFPQ bmy_02437T0/1-681 AENLKRLLYV SCNPRAAMGN FVDLCRAPSN RVKGSPFRPV KAVAVDLFPQ ENSBTAP00000026476/1-591 AENVRRLLYV SCNPRAAMGN FVDLCRAPSN RVKGTPFRPV KAVAVDLFPQ 651 700 ENSTTRP00000007700/1-639 TPHCEMLILF ERVEHPNGMG ALEPQDPPVQ PPPGPPGDTP PETRASPAS BACU019404/1-628 TPHCEMLILF ERVEHPNGVG ALEPQDPPVQ PPPGPPGDTP PETRASPTS ENSP00000252136/1-625 TPHCEMLILF ERVEHPNGTG VLGPHSPPAQ PTPGPPDNTL QETGTFPSS bmy_02437T0/1-681 TPHCEMLILF ERVEHPNGVG TLEPQDPPVQ PPPGPPGDTP PETRASPAS ENSBTAP00000026476/1-591 TLHCEMLILF ERVEYPNGAG ALEPQKSLVQ TPPAPPGDTP PEARVSPAS