KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:29:02 2014 Check: 00 .. Name: ENSTTRP00000008526/1-692 Len: 903 Check: 5180 Weight: 1.00 Name: ENSP00000257198/1-894 Len: 903 Check: 7778 Weight: 1.00 Name: bmy_18607T0/1-699 Len: 903 Check: 9243 Weight: 1.00 Name: ENSBTAP00000026482/1-893 Len: 903 Check: 1573 Weight: 1.00 // 1 50 ENSTTRP00000008526/1-692 MAVASTAPES IFSKQLLFSF LVLILFCSAC QTISLQVPSH LQAEALVGKV ENSP00000257198/1-894 MALASAAPGS IFCKQLLFSL LVLTLLCDAC QKVYLRVPSH LQAETLVGKV bmy_18607T0/1-699 ---------- ---------- --LILFCDAC QKISLQVPSH LQAEALVGKV ENSBTAP00000026482/1-893 MAVASAAPGS IFWKQLLFSL LVLILFCDAC QKISLQVPSH LRAEALVGKV 51 100 ENSTTRP00000008526/1-692 NLKERLPSAS LIQSSGPDFS ILEDGSTYTA HNLILSSEKK SFPILLSDTQ ENSP00000257198/1-894 NLEECLKSAS LIRSSDPAFR ILEDGSIYTT HDLILSSERK SFSIFLSDGQ bmy_18607T0/1-699 NLKECLQSAS LIQSSDPDFR ILEDGSIYTT HDLILSSEKK SFSILLSDTQ ENSBTAP00000026482/1-893 NLKECLQSAS LILSSDPDFR ILEDGSIYTT HDLVLSSG-K SFSILLSDSQ 101 150 ENSTTRP00000008526/1-692 RQEQKEIEIV LEAGGRKI-- ---------- ---------- ---------- ENSP00000257198/1-894 RREQQEIKVV LSARENKSPK KRHTKDTALK RSKRRWAPIP ASLMENSLGP bmy_18607T0/1-699 GQEQKEIEIV LEAGGRKIP- KRYPKDTDLK RSKRRWAPIP CSLMENSLGP ENSBTAP00000026482/1-893 GQGQKEIEII LEAGGKKVP- KRHMKDAVLR RSKRRWAPIP CSLMENSLGP 151 200 ENSTTRP00000008526/1-692 ---------- ---------- ---------- ---------- ---------- ENSP00000257198/1-894 FPQHVQQIQS DAAQNYTIFY SISGPGVDKE PFNLFYIEKD TGDIFCTRSI bmy_18607T0/1-699 FPQHRS---- ---------- ---------- ---------- ---------- ENSBTAP00000026482/1-893 FPQHVQQVQS DAAQNYTIFY SISGPGVDKE PFNLFFIEKD TGDIFCTRSI 201 250 ENSTTRP00000008526/1-692 ---------- YAYATTVDGY APEYTLPLLF KVEDDNDNAS YFEDKVTVFS ENSP00000257198/1-894 DREKYEQFAL YGYATTADGY APEYPLPLII KIEDDNDNAP YFEHRVTIFT bmy_18607T0/1-699 ---------- ---------- ---------- AVEDDNDNAA YFEDKVTVFS ENSBTAP00000026482/1-893 DREQYQEFPI YAYATTADGY APEYPLPLVF KVEDDNDNAP YFENKLTVFT 251 300 ENSTTRP00000008526/1-692 VPENCQTGTS VGKVTAIDLD EPDTLHTCLK YKILQQIPDN SKHFSVHPD- ENSP00000257198/1-894 VPENCRSGTS VGKVTATDLD EPDTLHTRLK YKILQQIPDH PKHFSIHPDT bmy_18607T0/1-699 VPENCQTGXS VGKVTAIDLD EPDTLHTHLK YKILQQIPDN LKHFSVHPDT ENSBTAP00000026482/1-893 VPENCRTGTS VGKVTAIDLD EPDTLHTRLK YKILQQIPNN PRHFTVHPDT 301 350 ENSTTRP00000008526/1-692 -IITTTTCLL DRE------- ---------- ---------- ---------- ENSP00000257198/1-894 GVITTTTPFL DREKCDTYQL IMEVRDMGGQ PFGLFNTGTI TISLEDENDN bmy_18607T0/1-699 GVITTTTHLL DREKCDTYKL IMEVRDMGGQ PFGLFNTGTI TISLEDENDN ENSBTAP00000026482/1-893 GVITTTTPLL DREKCDTYKL IMEVRDMGGQ PFGLFNTGTI TISLEDENDN 351 400 ENSTTRP00000008526/1-692 ---------- ---------- ---------- ---------- ---------- ENSP00000257198/1-894 PPSFTETSYV TEVEENRIDV EILRMKVQDQ DLPNTPHSKA VYKILQGNEN bmy_18607T0/1-699 SPCFTETSYF TEVEENRIDF EILRMAVYDQ DLPNTPHSKA ---------- ENSBTAP00000026482/1-893 APYFTETSYT VEVEENRIDV EILRMAVHDH DLPNTPHSRA VYQILQGNEN 401 450 ENSTTRP00000008526/1-692 ---------- ---------- SLNYEVHRQM VLQIGVLNEA QFPKAANSQ- ENSP00000257198/1-894 GNFIISTDPN TNEGVLCVVK PLNYEVNRQV ILQVGVINEA QFSKAASSQ- bmy_18607T0/1-699 ---------- ---------- SLNYEVHRQM VLQIGILNEA QFSKAANSQ- ENSBTAP00000026482/1-893 GTFKISTDPN TNEAVLCVVK PLNYEVNRQV VLQIGVLNEA QFAKAVNSKT 451 500 ENSTTRP00000008526/1-692 TPTMCITTVT VKVKDHDEGP ECQPPVKVNK SKDGL-VGTT LLGYEAVDPD ENSP00000257198/1-894 TPTMCTTTVT VKIIDSDEGP ECHPPVKVIQ SQDGFPAGQE LLGYKALDPE bmy_18607T0/1-699 TPTMCITTVT VKVKDHDEGP ECQPPXKVIK SKDGLPVGTT LLGYEAVDPD ENSBTAP00000026482/1-893 TTTMCTTVVT VKVKDHDEGP ECQPPVKVIQ SEDCLPAGTE LLGYKAVDPE 501 550 ENSTTRP00000008526/1-692 SSTAEGLRYK KARDEDNWFE INEYTGDLKT VKVLDRKSTF VKDNQYNVSV ENSP00000257198/1-894 ISSGEGLRYQ KLGDEDNWFE INQHTGDLRT LKVLDRESKF VKNNQYNISV bmy_18607T0/1-699 SGTAEGLRYK KIRDEDNWFE INEYTGDLKT VKVLDRESTF TTNK-YNVSV ENSBTAP00000026482/1-893 RGTGEGLRYK KIQDEDNWFE INEYTGDLKT VKVLDRESTF VKNNQYNVSV 551 600 ENSTTRP00000008526/1-692 IAMDAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257198/1-894 VAVDAVGRSC TGTLVVHLDD YNDHAPQI-D KEVTICQNNE DFAVLKPVDP bmy_18607T0/1-699 IAMDA----- ---------D DNDHPPQI-E KEVTICRHDK DVAVLNPVDQ ENSBTAP00000026482/1-893 IAFDADGRSC TGTLVVFLED KNDHPPQIKQ EELTICRHDK DYVVLEPTDQ 601 650 ENSTTRP00000008526/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257198/1-894 DGPENGPPFQ FFLDNSASKN WNIEE-KDGK TAILRQRQNL DYNYYSVPIQ bmy_18607T0/1-699 DGPDNGPPFQ FILDNSASKL WTIETLTDGK TAILRELQNL DYNYYSVPLQ ENSBTAP00000026482/1-893 DGPDNGPPFQ FILDNSASKL WTVET-RDGK TAILRGRQDL DYDYYTVPIQ 651 700 ENSTTRP00000008526/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257198/1-894 IKDRHGLVAT HMLTVRVCDC STPSECRMKD KSTRDVR-PN VILGRWAILA bmy_18607T0/1-699 IKDRHGISAK HMLSVRXCDC TIPSECRMTT KVPRDARRSN AILGRWAILA ENSBTAP00000026482/1-893 IKDRHGASAT HILPVRVCDC TIPSECRMPS KLSREAALAN VFLGKWAILA 701 750 ENSTTRP00000008526/1-692 XXXXXXX--- ---ILFTYIC VTAKSTVKKC FPEDVAKQNL IVSNTEAPGE ENSP00000257198/1-894 MVLGSVLLLC ---ILFTCFC VTAKRTVKKC FPEDIAQQNL IVSNTEGPGE bmy_18607T0/1-699 MVLGSALLSC KYNYLECMFC L--HSTVKKC FPEDVAEQNI IVSNTEAPGE ENSBTAP00000026482/1-893 MVLGSVLLLC ---ILFTCFC VTVKKTVKKC FPEDVAQQNL IVSNTEGPGE 751 800 ENSTTRP00000008526/1-692 EVMEANIRLP TQKSNICDTR MSVSTLGGQG VKTHQSFEVV KGCYTLDPIK ENSP00000257198/1-894 EVTEANIRLP MQTSNICDTS MSVGTVGGQG IKTQQSFEMV KGGYTLDSNK bmy_18607T0/1-699 EVI------- --KSNICDTS MSVGTLGGQG VKTHQSFDVA KGCYTLDPIK ENSBTAP00000026482/1-893 EVMDANIRLP TQTSNVCDTS ISVGTLGGQG VKTQQSFEMV KGGYTLDANK 801 850 ENSTTRP00000008526/1-692 GGRHQTLKSV KGVGQGVTNT SRYTYDE-HS FTQPRLGEKV YL-GKDKEHK ENSP00000257198/1-894 GGGHQTLESV KGVGQG--DT GRYAYTDWQS FTQPRLGEKV YLCGQDEEHK bmy_18607T0/1-699 GGRHQTLESV KGVGQGVTDT SRYTYTDWHS FXQPRLGKKV YLCGKDEEHK ENSBTAP00000026482/1-893 GGGHQTLESV KGV----TDT GRYTYSDWHN FTQPRLGEKV YLCGQDEEHK 851 900 ENSTTRP00000008526/1-692 HSEDYVHSYN YEGKESVAGS VGCYRDPQEE EGFEFLDHLE PKFRTLAKTR ENSP00000257198/1-894 HCEDYVCSYN YEGKGSLAGS VGCCSDRQEE EGLEFLDHLE PKFRTLAKTC bmy_18607T0/1-699 QSAD------ ---------- ---------- ---------- ---------- ENSBTAP00000026482/1-893 LCEDYVRSYS YEGKGSVAGS VGCCSDRQEE EGLDFLDHLE PKFRTLAKTC 901 950 ENSTTRP00000008526/1-692 VKK ENSP00000257198/1-894 IKK bmy_18607T0/1-699 --- ENSBTAP00000026482/1-893 VKK