KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:29:05 2014 Check: 00 .. Name: ENSBTAP00000026492/1-731 Len: 743 Check: 8685 Weight: 1.00 Name: ENSTTRP00000000861/1-730 Len: 743 Check: 6436 Weight: 1.00 Name: bmy_16251T0/1-653 Len: 743 Check: 635 Weight: 1.00 Name: BACU008840/1-478 Len: 743 Check: 7925 Weight: 1.00 // 1 50 ENSBTAP00000026492/1-731 MDYKKIFR-K LDSSKMAELF MECEEEELEP WQKKVETPQE EDDELIFVGA ENSTTRP00000000861/1-730 MDNDNPFQPK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16251T0/1-653 -------M-F SRSSLSSSSF SSSEFQSGRP ALLAVTLQLD GQQQPFSTKN BACU008840/1-478 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000026492/1-731 VPGSKSPTSN IVNRGNPSSS AKEIKNETES RKIVFVFHPE SQ-----SSS ENSTTRP00000000861/1-730 XXXXXXXXXX ILNRGTPSSS SKELK--TVS QGVTDVFKPT SEFYKHPTSD bmy_16251T0/1-653 ISSLPCPVPD ILNRGNPSSS SKGIKIETVS QGVTDDFKPT SEHYKDPTSD BACU008840/1-478 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000026492/1-731 PEAAFPRFHP ESRSSYNSDM AQNVSKPDFA KNSSQVGLDE SSDLPFSWSQ ENSTTRP00000000861/1-730 PVAALPRLHP ESKSSHSSDT VQSMSKPDFI KTSSQDESDD SSDLVLDLTQ bmy_16251T0/1-653 PVAALPRFHP ESKSSRSPDI VQDMSKPDFT KNSSQDELDD SSDSVFDLTQ BACU008840/1-478 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000026492/1-731 NTVPLSQDGS TIYIEGLDET LPKIKHSDII KIITV---NP KTSESVSEIN ENSTTRP00000000861/1-730 DSTPLRKHGT TVYIXXXXXX XXXXXXXXXX XXXXX--XXX XXXXXXXXXX bmy_16251T0/1-653 VTIPLSQDGS TVYTEGLDET PPIIERSSVS KVDSVTPKKP KTSERVSDIN BACU008840/1-478 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000026492/1-731 PCASLSLTNC SSATSSYLMW SKGTHTLSTA TRTGTFFVRA CPKCNVQFNL ENSTTRP00000000861/1-730 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16251T0/1-653 PCASLSLTNS PSVTSSHVLL SKGTNTSPTL HKTGTPFLRS CPKCNVQFNL BACU008840/1-478 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000026492/1-731 LDPLKYHMKV CCPDMVDVFM EMIKVELSNI E-QNTTGAET GKLIMLVSDF ENSTTRP00000000861/1-730 XXXXXXXXXR CCPDMVNAFL GMIKVELSST EDKNETGAEK GKLIMLVSDF bmy_16251T0/1-653 LDPLKYHMKR CCPDMVNAFL EMIKVELSST EGKNETGAEK GKLIMLVSDF BACU008840/1-478 -------MKR CCPDMVNAFL EMSKVELSST EDKNETGAEK GKLVMLVSDF 301 350 ENSBTAP00000026492/1-731 YYGRHEGNFD DDEKTYTTFK CFSCLKVLKN NIRFMNHMKH HLELEKQNTE ENSTTRP00000000861/1-730 YYGRHEGAVD EEEKTYTTFK CFSCLKVLKN NLRFMNHMKH HLELEKQNTE bmy_16251T0/1-653 YYGRHEGAVD VEQKTYTTFK CFSCLKVLKN NIRYVNTYFY ---------- BACU008840/1-478 YYGRHEGAVD VEQKTYTTFK CFSCLKVLKN NIRFMNHMKH HLELEKQNTE 351 400 ENSBTAP00000026492/1-731 SWENHTTCQH CYRQYPTPFQ LQCHIESTHT PLEFSTICKI CELSFDTEHI ENSTTRP00000000861/1-730 SWENHTTCQH CYRQYPTPFQ LQCHIESTHT PHEFSTICKI CELSFETEHT bmy_16251T0/1-653 ---------- --------FY LKIGM----- ---------- LQMSLTLGST BACU008840/1-478 SWENHTTCQH CYRQYPTPFQ LQCHIESTHT PHEFSTICKI CELSFETEQT 401 450 ENSBTAP00000026492/1-731 LLQHMKDTHK PGEMPYICQV CQFRSSSFTD VETHFRVSHE NTKNLLCPFC ENSTTRP00000000861/1-730 LLQHMKDTHK PGEMPYVCQX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16251T0/1-653 LV-------- ---------V CQFRSSTFSD VETHFRASHE NTKNLLCPFC BACU008840/1-478 LLQHMKDTHK PGEMPYVCQV CQFRSSTFSD VETHFRASHE NTKNLLCPFC 451 500 ENSBTAP00000026492/1-731 LKVSRMATPY MNHYMKHQKK GIHRCSQCRL QFLTYKEKLV HKLEHRTFIK ENSTTRP00000000861/1-730 XXXXXXXXXX MNHYMKHQKK GVHRCTKCRL QFLTYKEKLD HRTQHRTFIK bmy_16251T0/1-653 LKVSRMATPY MNHYMKHQKK GVHRCTKCRL QFLTYKEKLD HKTQHRTFIK BACU008840/1-478 LKVSRMATPY MNHYMKHQKK GVYRCTKCRL QFLTYKEKLD HKTQHRTFIK 501 550 ENSBTAP00000026492/1-731 PKELEGLPPG TK-VTIRASI ESLHSGPSTS KSILSSSTSS STCLQVSPST ENSTTRP00000000861/1-730 PKELEGLPPG TK-VTIRASV GPVRSSLSTT S---SKDTPS TSSLQVSPSK bmy_16251T0/1-653 PKELEGLPPG TK-VTIRASV GPLHSGSSTT S---SKNTPG TSSLQVSPPK BACU008840/1-478 PKELEGLPPG TKVVTIRASV GPPHSGSSTT S---SKDTPS TS-LQVSPPR 551 600 ENSBTAP00000026492/1-731 SKTTTTGSSP RSNANEYKTR EFSATTSTES KPSTSKERAA KCRAKTSYKP ENSTTRP00000000861/1-730 STSETAEDPT KPYESKYKTR KSYATTSTAS SRGD----VF EYKAKTYHKQ bmy_16251T0/1-653 STSTTAENPT RANESKYKTR KPCAATSTAS KQGRG---AF EYKAKTYYKQ BACU008840/1-478 STSTTAENPT RANESKYKTR KPCAATSTAS KQGRG---AF EYKAKTYYKQ 601 650 ENSBTAP00000026492/1-731 KKKRNRRNKI SVALKNLRC- RGVYTCIECH TKIKDFASHF SLFTRCNFCK ENSTTRP00000000861/1-730 KKECNKKNKI GIVLKNLRCL RGVHKCIECR SKIKDFASHF SIYIHCNFCR bmy_16251T0/1-653 KKERNRKNKI SIALKNLRCL RGVHKCIECR SRIKDFASHF SIYMHCNFCR BACU008840/1-478 KQERNRKNKI SIALKNLRCL QGVHKCIECR SGIKDFASHF SMYMLCNFCR 651 700 ENSBTAP00000026492/1-731 YSTNCNKAFV NHMLSSHTSQ PAKRVSIFKK RCRTLSRGIT LVCLKCDFLA ENSTTRP00000000861/1-730 YKTNCNKAFI NHTVSSHSNQ PTKRFYLFKK HSGTL-RGIT LVCLKCDFLT bmy_16251T0/1-653 YKTNCNKAFV NHMVSSHSNQ PTKRFYIFKK HSGTL-RGIT LVCLKCDFLT BACU008840/1-478 YKTNCNKAFL NHMVSSHSDQ PTKRFYFFKK HSGTL-RGIT LVCLKCNFLT 701 750 ENSBTAP00000026492/1-731 DSSTLDRMAK HLSQRKTHTC QVIIETLPEG TSAVNPFLLG SLQ ENSTTRP00000000861/1-730 DSSGLDLMAK HLSQRKTHTC QVIIENVPGS ISASGPTSAR LLK bmy_16251T0/1-653 DSSGLDLMAK HLSQRKTHTC QVIVENAAC- ---------- --- BACU008840/1-478 DSSGLDLMAK HLSQRKTHTC QVIVENVPGS ISASGPTSAH LLK