KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:07 2014 Check: 00 .. Name: BACU013213/1-474 Len: 566 Check: 8850 Weight: 1.00 Name: ENSP00000306991/1-552 Len: 566 Check: 4642 Weight: 1.00 Name: bmy_07127T0/1-496 Len: 566 Check: 8247 Weight: 1.00 Name: ENSTTRP00000003124/1-552 Len: 566 Check: 5617 Weight: 1.00 Name: ENSBTAP00000026503/1-552 Len: 566 Check: 6339 Weight: 1.00 // 1 50 BACU013213/1-474 ---------- ---------- ---------- ---------- ---------- ENSP00000306991/1-552 MHCERFLCIL RIIGTTLFGV SLLLGITAAY IVGYQFIQTD NYYFSFGLYG bmy_07127T0/1-496 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003124/1-552 MHCERFLCIL RIIGTTLFGV SLLLGITAAY IVGYQFIQTD NYYFSFGLYG ENSBTAP00000026503/1-552 MHCERFLCIL RIIGTTLFGV SLLLGITAAY IVGYQFIQTD NYYFSFGLYG 51 100 BACU013213/1-474 ---------- ---------- MKKSLETPIK LNKTVALCIA AYQEDPDYLR ENSP00000306991/1-552 AFLASHLIIQ SLFAFLEHRK MKKSLETPIK LNKTVALCIA AYQEDPDYLR bmy_07127T0/1-496 ---------- ---------- MKKSLETPIK LNKTVALCIA AYQEDPDYLR ENSTTRP00000003124/1-552 AFLASHLIIQ SLFAFLEHRK MKKSLETPIK LNKTVALCIA AYQEDPDYLR ENSBTAP00000026503/1-552 AFLASHLIIQ SLFAFLEHRK MKKSLETPIK LNKTVALCIA AYQEDPDYLR 101 150 BACU013213/1-474 KCLQSVKRLT YPGIKVVMVI DGNSEDDLYM MDIFSEVMGR DKSATYIWKN ENSP00000306991/1-552 KCLQSVKRLT YPGIKVVMVI DGNSEDDLYM MDIFSEVMGR DKSATYIWKN bmy_07127T0/1-496 KCLQSVKRLT YPGIKVVMVI DGNSEDDLYM MDIFSEVMGR DKSATYIWKN ENSTTRP00000003124/1-552 KCLQSVKRLT YPGIKVVMVI DGNSEDDLYM MDIFSEVMGR DKSATYIWKN ENSBTAP00000026503/1-552 KCLQSVKRLT YPGIKVVMVI DGNSEDDLYM MDIFSEVMGR DKSATYIWKN 151 200 BACU013213/1-474 NFHVKGPGET DESHKESSQH VTQLVLSNKS ICIMQKWGGK REVMYTAFRA ENSP00000306991/1-552 NFHEKGPGET DESHKESSQH VTQLVLSNKS ICIMQKWGGK REVMYTAFRA bmy_07127T0/1-496 NFHVKGPGET DESHKESSQH VTQLVLSNKS ICIMQKWGGK REVMYTAFRA ENSTTRP00000003124/1-552 NFHVKGPGET DESHKESSQH VTQLVLSNKS ICIMQKWGGK REVMYTAFRA ENSBTAP00000026503/1-552 NYHVKGPGET DESHKESSQH VTQLVLSNKS ICIMQKWGGK REVMYTAFRA 201 250 BACU013213/1-474 LGRSVDYVQ- ---------- ---VCDSDTM LDPASSVEMV KVLEEDPMVG ENSP00000306991/1-552 LGRSVDYVQ- ---------- ---VCDSDTM LDPASSVEMV KVLEEDPMVG bmy_07127T0/1-496 LGRSVDYVQL KQFTFVVSNH DIIVCDSDTM LDPASSVEMV KVLEEDPMVG ENSTTRP00000003124/1-552 LGRSVDYVQ- ---------- ---VCDSDTM LDPASSVEMV KVLEEDPMVG ENSBTAP00000026503/1-552 LGRSVDYVQ- ---------- ---VCDSDTM LDPASSVEMV KVLEEDPMVG 251 300 BACU013213/1-474 GVGGDVQILN KYDSWISFLS SVRYWMAFNI ERACQSYFGC VQCISGPLGM ENSP00000306991/1-552 GVGGDVQILN KYDSWISFLS SVRYWMAFNI ERACQSYFGC VQCISGPLGM bmy_07127T0/1-496 GVGGDVQILN KYDSWISFLS SVRYWMAFNI ERACQSYFGC VQCISGPLGM ENSTTRP00000003124/1-552 GVGGDVQILN KYDSWISFLS SVRYWMAFNI ERACQSYFGC VQCISGPLGM ENSBTAP00000026503/1-552 GVGGDVQILN KYDSWISFLS SVRYWMAFNI ERACQSYFGC VQCISGPLGM 301 350 BACU013213/1-474 YRNSLLHEFV EDWYNQTFLG RQRTFGDDRH LTNRVLSLAM QQNTQLDPK- ENSP00000306991/1-552 YRNSLLHEFV EDWYNQEFMG NQCSFGDDRH LTNRVLSLGY ATKYTARSKC bmy_07127T0/1-496 YRNSLLHEFV EDWYNQEFMG SQCSFGDDRH LTNRVLSLGY ATKYTARSKC ENSTTRP00000003124/1-552 YRNSLLHEFV EDWYNQEFMG SQCSFGDDRH LTNRVLSLGY ATKYTARSKC ENSBTAP00000026503/1-552 YRNSLLHEFV EDWYNQEFMG SQCSFGDDRH LTNRVLSLGY ATKYTARSKC 351 400 BACU013213/1-474 -------YLR WLNQQTRWSK SYFREWLYNA MWFHKHHLWM TYEAVITGFF ENSP00000306991/1-552 LTETPIEYLR WLNQQTRWSK SYFREWLYNA MWFHKHHLWM TYEAIITGFF bmy_07127T0/1-496 LTETPIEYLR WLNQQTRWSK SYFREWLYNA MWFHKHHLWM TYEAVITGFF ENSTTRP00000003124/1-552 LTETPIEYLR WLNQQTRWSK SYFREWLYNA MWFHKHHLWM TYEAVITGFF ENSBTAP00000026503/1-552 LTETPIEYLR WLNQQTRWSK SYFREWLYNA MWFHKHHLWM TYEAVITGFF 401 450 BACU013213/1-474 PFFLIATVIQ LFYRGKIWNI LLFLLTVQLV GLIKSSFASC LRGNIVMVFM ENSP00000306991/1-552 PFFLIATVIQ LFYRGKIWNI LLFLLTVQLV GLIKSSFASC LRGNIVMVFM bmy_07127T0/1-496 PFFLIATVIQ LFYRGKIWNI LLFLLTVQLV GLIKSSFASC LRGNIVMVFM ENSTTRP00000003124/1-552 PFFLIATVIQ LFYRGKIWNI LLFLLTVQLV GLIKSSFASC LRGNIVMVFM ENSBTAP00000026503/1-552 PFFLIATVIQ LFYRGKIWNI LLFLLTVQLV GLIKSSFASC LRGNIVMVFM 451 500 BACU013213/1-474 SLYAVLYMSS LLPAKMFAIA TINKAGWGTS GRKTIVVNFI GLIPVSVWFT ENSP00000306991/1-552 SLYSVLYMSS LLPAKMFAIA TINKAGWGTS GRKTIVVNFI GLIPVSVWFT bmy_07127T0/1-496 SLYSVLYMSS LLPAKMFAIA TINKAGWGTS GRKTIVVNFI GLIPVSVWFT ENSTTRP00000003124/1-552 SLYSVLYMSS LLPAKMFAIA TINKAGWGTS GRKTIVVNFI GLIPVSVWFT ENSBTAP00000026503/1-552 SLYSVLYMSS LLPAKMFAIA TINKAGWGTS GRKTIVVNFI GLIPVSVWFT 501 550 BACU013213/1-474 ILLGGVIFTI YKESKKPFSE SKQTVLIVGT LLYACYWVML LTLYVVLINK ENSP00000306991/1-552 ILLGGVIFTI YKESKRPFSE SKQTVLIVGT LLYACYWVML LTLYVVLINK bmy_07127T0/1-496 ILLGGVXFTI YKESKKPFSE SKQTVLIVGT LLYACYWVML LTLYVVLINK ENSTTRP00000003124/1-552 ILLGGVIFTI YKESKKPFSE SKQTVLIVGT LLYACYWVML LTLYVVLINK ENSBTAP00000026503/1-552 ILLGGVIFTI YKESKKPFSE SKQTVLIVGT LLYACYWVML LTLYVVLINK 551 600 BACU013213/1-474 CGRRKKGQQY DMVLDV ENSP00000306991/1-552 CGRRKKGQQY DMVLDV bmy_07127T0/1-496 CGRRKKGQQY DMVLDV ENSTTRP00000003124/1-552 CGRRKKGQQY DMVLDV ENSBTAP00000026503/1-552 CGRRKKGQQY DMVLDV