KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:08 2014 Check: 00 .. Name: ENSP00000231368/1-1025 Len: 1096 Check: 8954 Weight: 1.00 Name: ENSBTAP00000026511/1-1023 Len: 1096 Check: 984 Weight: 1.00 Name: ENSTTRP00000002787/1-1052 Len: 1096 Check: 4846 Weight: 1.00 Name: bmy_07461T0/1-556 Len: 1096 Check: 5906 Weight: 1.00 Name: BACU017799/1-1041 Len: 1096 Check: 5036 Weight: 1.00 // 1 50 ENSP00000231368/1-1025 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026511/1-1023 -------FF- ---------- ---------- ---------- ---------- ENSTTRP00000002787/1-1052 ---WCFFIFP SLFLQLRKPG AAERRRPSRH LPGSPRPRWA CSVGRAASAL bmy_07461T0/1-556 ---MSFFFF- ---------- -------SNS VPG------- ---------- BACU017799/1-1041 MVLQAFFFF- ---------- -------SNS VPG------- ---------- 51 100 ENSP00000231368/1-1025 ---------- -------MEP FT---NDRLQ LPRNMIENSM FEEEPDVVDL ENSBTAP00000026511/1-1023 ---------- ---------- -----LDRLQ LPRNMIENSM FEEEPDVVDL ENSTTRP00000002787/1-1052 GVGSLGSPAE RSRGGGKMDP FT---DDRLQ LPRNMIENSM FEEEPDVVDL bmy_07461T0/1-556 ---------- ---------P YVLVFLDRLQ LPRNMIENSM FEEEPDVVDL BACU017799/1-1041 ---------- ---------P YVLVFLDRLP LPRNMIENSM FEEEPDVVDL 101 150 ENSP00000231368/1-1025 AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE HEMEEDEEDY ESSAKLLGMS ENSBTAP00000026511/1-1023 AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE HELDEDEEDY ESSAKLLGMS ENSTTRP00000002787/1-1052 AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE HEMDEDEEDY ESSAKLLGMS bmy_07461T0/1-556 AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE HEMDEDEEDY ESSAKLLGMS BACU017799/1-1041 AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE HEIDEDEEDY ESSAKLLGMS 151 200 ENSP00000231368/1-1025 FMNRSSGLRN SATGYRQSPD GACSVPSART MVVCAFVIVV AVSVIMVIYL ENSBTAP00000026511/1-1023 FMNRSSGLRN SAAGYRQNSD GTCPAPSART IGVCVCIILL AVAIILAIYF ENSTTRP00000002787/1-1052 FMNRSSGLRN SAAGYRQSSD GTCSVLSART MVVCAFVIVV AVSVIMVIYL bmy_07461T0/1-556 FMNRSSGLRN SAAGYRQSSD GTCSVPSART MVVCAFVIVV AVSVIMVIYL BACU017799/1-1041 FMNRSSGLRN SAAGYRQSSD GTCSVPSART MVVCAFVIVV AVSVIMVIYL 201 250 ENSP00000231368/1-1025 LPRCTFTKEG CHKKNQSIGL IQPFATNGKL FPWAQIRLPT AVVPLRYELS ENSBTAP00000026511/1-1023 LPRCTFTKEG CHKNNRPTEP IQPIATNGKL FPWAQIRLPT AVTPVRYDLT ENSTTRP00000002787/1-1052 LPRCTFTKEG CHKKNQSMGL IQPIATNGKL FPWAQIRLPT AIMPVRYELN bmy_07461T0/1-556 LPRCTFTKEG CHKKNQSMGL IQPIATNGKL FPWAQIRLPT AVMPVRYELN BACU017799/1-1041 LPRCTFTKEG CHKKNQSMGL IQPIATNGKL FPWAQIRLPT AIMPVRYELN 251 300 ENSP00000231368/1-1025 LHPNLTSMTF RGSVTISVQA LQVTWNIILH STGHNISRVT FMSAVSSQEK ENSBTAP00000026511/1-1023 LHPNLTSMTF RGSVTISLQA LQATWNIILH STGHNISRVT FMTAVSSQEK ENSTTRP00000002787/1-1052 LHPNLTSMTF RGSVTISLQA LQATWNIVLH STGHNISRVT FMSAVSSQEK bmy_07461T0/1-556 LHPNLTSMTF RGSVTISLQA LQATWNIVLH STGHNISRVT FMSAVXSQEK BACU017799/1-1041 LHPNLTSMTF RGSVTISFQA LQATWNIVLH STGHNISRVT FMSAVSSQEK 301 350 ENSP00000231368/1-1025 QAEILEYAYH GQIAIVAPEA LLAGHNYTLK IEYSANISSS YYGFYGFSYT ENSBTAP00000026511/1-1023 EVDVLEYPLH EQIAIVAPET LLEGHNYTLK IEYSANISSS YYGFYGISYR ENSTTRP00000002787/1-1052 QVDVLEYPFH EQIAIVAPEA LLEGHNYTLK IEYSANISSS YYGFYGISYT bmy_07461T0/1-556 QVDVLEYPFH EQIAIVAPEA LLEGHNYTLK IEYSANISRS YYGFYGISYT BACU017799/1-1041 QVDVLEYPFH EQIAIVAPEA LLEGHNYTLK IEYSANISRS YYGFYGISYT 351 400 ENSP00000231368/1-1025 DESNEKKYFA ATQFEPLAAR SAFPCFDEPA FKATFIIKII RDEQYTALSN ENSBTAP00000026511/1-1023 DESNEKKYFA ATQFEPLAAR SAFPCFDEPA FKATFVIRIK RDEQYTALSN ENSTTRP00000002787/1-1052 DESNEKKYFA ATQFEPL-AR SAFR-FDXXX XXXXXXXXXX XXXXXXXXXX bmy_07461T0/1-556 DESNEKK--- ---------- ---------- --------II RDEQYTALSN BACU017799/1-1041 DESNEKKYFA ATQFEPLAAR SAFPCFDEPA FKAIFIIRII RDEQYTALSN 401 450 ENSP00000231368/1-1025 MPKKSSVVLD DGLVQDEFSE SVKMSTYLVA FIVGEMKNLS QDVNGTLVSI ENSBTAP00000026511/1-1023 MPKKSSVVLE DGLVQDEFFE SVKMSTYLVA FIVGEMKNLS QDVNGTLVSI ENSTTRP00000002787/1-1052 XXXKSSVIME DGLVQDEFSE SVKMSTYLVA FVVGELKNLS QDINGTLVSV bmy_07461T0/1-556 MPKKSSVIME DGLVQDEFSE SVKMSTYLVA FLVGELKNLS QDINGTLVSI BACU017799/1-1041 MPKKSSVIME DGLVQDEFSE SVKMSTYLVA FIVGELKNLS QDINGTLVSI 451 500 ENSP00000231368/1-1025 YAVPEKIGQV HYALETTVKL LEFFQNYFEI QYPLKKLDLV AIPDFEAGAM ENSBTAP00000026511/1-1023 YAVPEKIGQV QHALETTVKL LDFYQSYFEI QYPLKKLDLV AIPDFEAGAM ENSTTRP00000002787/1-1052 YAVPEKIGQV HHALETTVKL LEFYQNYFEI QYPLKKLDLV AIPDFEAGAM bmy_07461T0/1-556 YAVPEKIGQV HHALETTVKL LEFYQNYFEI QYPLKKLDLV AIPDFEAGAM BACU017799/1-1041 YAVPEKIGQV HHALETTVKL LEFYQNYFEI QYPLKKLDLV AIPDFEAGAM 501 550 ENSP00000231368/1-1025 ENWGLLTFRE ETLLYDSNTS SMADRKLVTK IIAHELAHQW FGNLVTMKWW ENSBTAP00000026511/1-1023 ENWGLLTFRE ETLLYDANTS SVADRKLVTK VIAHELAHQW FGNLVTMQWW ENSTTRP00000002787/1-1052 ENWGLLTFRE ETLLYDNNTS SVVDKKLVTK IIAHELAHQW FGNLVTMQWW bmy_07461T0/1-556 ENWGLLTFRE ETLLYDNNTS SVVDKKLVTK VIAHELAHQW FGNLVTMQWW BACU017799/1-1041 ENWGLLTFRE ETLLYDNNTS SVVDKKLVTK VIAHELAHQW FGNLVTMQWW 551 600 ENSP00000231368/1-1025 NDLWLNEGFA TFMEYFSLEK IFKELSSYED FLDARFKTMK KDSLNSSHPI ENSBTAP00000026511/1-1023 NDVWLNEGFA TFMEYFSLEK IFGELSSYED FLDARFKTMK KDSLNSSHPI ENSTTRP00000002787/1-1052 NDVWLNEGFA TFMEYFSLEK IFGELSSYED FLDARFKTLK KDSLNSSHPI bmy_07461T0/1-556 NDVWLNEGFA TFMEYFSLEK IFGELSSYED FLDARFKTLK KDSLNSSHPI BACU017799/1-1041 NDVWLNEGFA TFMEYFSLEK IFGELSSYED FLDARFKTLK KDSLNSSHPI 601 650 ENSP00000231368/1-1025 SS-SVQSSEQ IEEMFDSLSY FKGSSLLLML KTYLSEDVFQ HAVVLYLHNH ENSBTAP00000026511/1-1023 SSSSVESSEQ IEEMFDSLSY FKGASLLLML KTYLSEDIFQ HAIILYLHNH ENSTTRP00000002787/1-1052 SSLSVQSSEQ IEEMFDSLSY FKGASLLLML KTYLSEDVFQ HAIVLYLHNH bmy_07461T0/1-556 SSLSVQSSEQ IEEMFDSLSY FK---VLL-- ---------- ---------- BACU017799/1-1041 SSLSVQSSEQ IEEMFDSLSY FKGASLLLML KTYLSEDVFQ HAIVLYLHNH 651 700 ENSP00000231368/1-1025 SYASIQSDDL WDSFNEVTNQ TLDVKRMMKT WTLQKGFPLV TVQKKGKELF ENSBTAP00000026511/1-1023 SYTSIHSDDL WDSFNEFTNK TLDVKKMMRT WTLQKGFPLV TVQRKGKQIL ENSTTRP00000002787/1-1052 SYASIHSDDL WDSFNEVSNK TLDVRKMMKT WTLQKGFPLV TVQRKGKELL bmy_07461T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU017799/1-1041 SYASIHSDDL WDSFNEVSNK TLDVRKMMKT WTLQKGFPLV TVQRKGKELL 701 750 ENSP00000231368/1-1025 IQQERFFLNM KPEIQPSDTS YLWHIPLSYV TEGRNYSKYQ SVSLLDKKSG ENSBTAP00000026511/1-1023 VQQERFCLNV KPEIQPSDAS SLWHIPLSYI TDGKNYSKHR SVSLLDKKSG ENSTTRP00000002787/1-1052 VQQERFSLNM KPEIQPSDAS SLWHIPLSYV TDEGNYSKYR SVSLLDKKS- bmy_07461T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU017799/1-1041 VQQERFSLNT KPEIQPSDAS SLWHIPLSYV TDEGNYSKYR SVSLLDKKSV 751 800 ENSP00000231368/1-1025 VINLTEEVLW VKVNINMNGY YIVHYADDDW EALIHQLKIN PYVLSDKDRA ENSBTAP00000026511/1-1023 VINLTEEVQW IKVNTNMTGY YIVHYADDNW EALIKQLKIN PYVLSDKDRA ENSTTRP00000002787/1-1052 VINLTEEVKW IKVNTDMTGY YIVHYADNNW EALIKQLKIN PFVLSDKDRA bmy_07461T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU017799/1-1041 VINLTEEVKW IKVNTDMTGY YIVHYADNNW EALIKQLKIN PYVLSDKDRA 801 850 ENSP00000231368/1-1025 NLINNIFELA GLGKVPLKRA FDLINYLGNE NHTAPITEAL FQTDLIYNLL ENSBTAP00000026511/1-1023 NLINNIFELA GLGKVSLQRA FDLIDYLRNE TYTAPISEAL FQTELIYNLL ENSTTRP00000002787/1-1052 SLINNIFELA GLGKVPLQRA FDLIDYLRNE TYTAPITEAL FQTELIYN-L bmy_07461T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU017799/1-1041 NLINNIFELA GLGKVPLQRA FDLIDYLRNE TSTAPITEAL FQTELIYN-L 851 900 ENSP00000231368/1-1025 EKLGYMDLAS RLVTRVFKLL QNQIQQQTWT DEGTPSMREL RSALLEFACT ENSBTAP00000026511/1-1023 DKLGHVDLAS RLVNKVFKLL QSQIQQQTWT DEGTPSTREL RSVLLDFACA ENSTTRP00000002787/1-1052 EELGHMDLAS KLV------- ---------- ---------- ------FACT bmy_07461T0/1-556 ---------- ---------- ---------- ---------- --------CT BACU017799/1-1041 EELGHMDLAS RLVNKVFKLL QSQIQQQTWT DEGSPSVREL RSALLDFACT 901 950 ENSP00000231368/1-1025 HNLGNCSTTA MKLFDDWMAS NGTQSLPTDV MTTVFKVGAK TDKGWSFLLG ENSBTAP00000026511/1-1023 HRLENCSAAA LKLFFDWMAS NGTQSLPTDV MTTVFKAGAK TEGGWSFLLS ENSTTRP00000002787/1-1052 HSLENCSTAA MKLFNDWVAS NGTQSLPTDV MTTVFKVGAK TERGWSFLLS bmy_07461T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU017799/1-1041 HRLENCSTAA MKLFNDWVAS NGTQSLPADV MTTVFKVGAK TEKGWSFLFS 951 1000 ENSP00000231368/1-1025 KYISIGSEAE KNKILEALAS SEDVRKLYWL MKSSLNGDNF RTQKLSFIIR ENSBTAP00000026511/1-1023 KYVSLGSEAE KNKILEALAS SEDVRKLYWL MKKSLDGDLI RTQKLSFIIR ENSTTRP00000002787/1-1052 KYASVGSEAE KNKILEALAS SEDVRKLYWL MKSSLDGDTI RTQKLSFIIR bmy_07461T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU017799/1-1041 KYVSIGSEAE KNKILEALAS SEDARKLYWL MKSSLNGDTI RTQKLSFIIR 1001 1050 ENSP00000231368/1-1025 TVGRHFPGHL LAWDFVKENW NKLVQKFPLG SYTIQNIVAG STYLFSTKTH ENSBTAP00000026511/1-1023 TVARHFPGHL LAWDFVKENW SKLVQKFHLG SYTIQSIVAG STHLFATKAH ENSTTRP00000002787/1-1052 TVGRHFPGHL LAWDFVKENW SKLVQKFHLG SYTIQSIVAG STHLFSTKAH bmy_07461T0/1-556 ---------- ------KSTW SRLQINFI-- ---------- ---------- BACU017799/1-1041 TVGRHFPGHL LAWDFVKENW SKLVQKFHLG SYTIQSIVAG STHLFSTKAH 1051 1100 ENSP00000231368/1-1025 LSEVQAFFEN QSEATFRLRC VQEALEVIQL NIQWMEKNLK SLTWWL ENSBTAP00000026511/1-1023 LSEVQAFFEN QSEATFRLRC VQEALEVIQL NMQWVEKNLK TLTYWL ENSTTRP00000002787/1-1052 LSEVQAFFEN QSEATFRLRC VQEALEVIQL NIQWVEKNLK TLTFL- bmy_07461T0/1-556 ---------- ---------C EQAA------ ---------- ------ BACU017799/1-1041 LSEVQAFFEN QSEATFRLRC VQEALEVIQL NIQWVEKNLE TLTFWL