KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:09 2014 Check: 00 .. Name: ENSP00000361043/1-747 Len: 759 Check: 1326 Weight: 1.00 Name: ENSTTRP00000005976/1-744 Len: 759 Check: 7760 Weight: 1.00 Name: ENSBTAP00000026513/1-749 Len: 759 Check: 1042 Weight: 1.00 Name: bmy_07215T0/1-691 Len: 759 Check: 5603 Weight: 1.00 Name: BACU000313/1-757 Len: 759 Check: 9257 Weight: 1.00 // 1 50 ENSP00000361043/1-747 ---------- MRRSLAPSQL AKRKPEGRSC DDEDWQPGLV TPRK-RKSSS ENSTTRP00000005976/1-744 ---------- MRRSLAPSQL AKRKPEGGPC DEEDWRPEAV XXXX-XXXXX ENSBTAP00000026513/1-749 ---------- MRRSLAPSQL AKRKPEDGPS DDEDWQPGAV TSKKPKKSSC bmy_07215T0/1-691 MGS-LSVLSL QRRSLAPSQL AKRKPEGGPC DEEDWRPGAV ---------- BACU000313/1-757 MGAELNIPDL DRRSLAPSQL AKRKPEGGPC DEEDWRPGAV TPKK-RKSSS 51 100 ENSP00000361043/1-747 ETQIQECFLS PFRKPLSQLT NQPPCLDSSQ HEAFIRSILS KPFKVPIPNY ENSTTRP00000005976/1-744 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XEAFIRSILS KPFKIPIPNY ENSBTAP00000026513/1-749 ETQSQECFLS PFRKPLTQLT NRPPCLDSSQ HEAFIRSILS KPFKIPIPNY bmy_07215T0/1-691 ---------- ---------- ---------- -EAFIRSILS KPFKIPIPNY BACU000313/1-757 ETQSQECFLS PFRKPLTQLT NRPPCLDSSQ HEAFIRSILS KPFKIPIPNY 101 150 ENSP00000361043/1-747 QGPLGSRALG LKRAGVRRAL HDPLEKDALV LYEPPPLSAH DQLKLDKEKL ENSTTRP00000005976/1-744 QGPLGFRALG LKRAGVRRAL HDPLEEGALV LYEPPLLSAH DQLKLDKEKL ENSBTAP00000026513/1-749 QGPLGSRALG LKRAGVRRAL HDPLEEGALV LYEPPPLSAH DQLKFDKEKL bmy_07215T0/1-691 QGPLGSRALG LKRAGVRRAL HDPLEEGALV LYEPPSLSAH DQLKLDKEKL BACU000313/1-757 QGPLGSRALG LKRAGVRRAL HDPLEEGALV LYEPPSLSAH DQLKLDKEKL 151 200 ENSP00000361043/1-747 PVHVVVDPIL SKVLRPHQRE GVKFLWECVT SRRIPGSHGC IMADEMGLGK ENSTTRP00000005976/1-744 PXXXXXXXXX XXXXXXXXXX GVK-LWECVT SRRIRGSHGC IMADEMGLGK ENSBTAP00000026513/1-749 PVHVVVDPIL SKVLRPHQRE GVKFLWECVT SRRIPGSHGC IMADEMGLGK bmy_07215T0/1-691 PVHVVVDPIL SKVLRPHQRE GVKFLWECVT SRRIPGSHGC IMADEMGLGK BACU000313/1-757 PVHVVVDPIL SKVLRPHQRE GVKFLWECVT SRRIPGSHGC IMADEMGLGK 201 250 ENSP00000361043/1-747 TLQCITLMWT LLRQSPECKP EIDKAVVVSP SSLVKNWYNE VGKWLGGRIQ ENSTTRP00000005976/1-744 TLQCITLMWT LLRQSPECKP EIDKAVVVSP SSLVKNWYNE VGKWLGGRIQ ENSBTAP00000026513/1-749 TLQCITLMWT LLRQSPDCKP EIDKAVVVSP SSLVRNWYNE VGKWLGGRIQ bmy_07215T0/1-691 TLQCITLMWT LLRQSPECKP EIDKAVVVSP SSLVKNWYNE VGKWLGGRIQ BACU000313/1-757 TLQCITLMWT LLRQSPECKP EIDKAVVVSP SSLVKNWYNE VGKWLGGRIQ 251 300 ENSP00000361043/1-747 PLAIDGGSKD EIDQKLEGFM NQRGARVSSP ILIISYETFR LHVGVLQKGS ENSTTRP00000005976/1-744 PLAIDGGSKD EIDQKLEGFM NQRGARVPSP ILIISYETFR LHVGVLRRGS ENSBTAP00000026513/1-749 PLAIDGGSKD EIDQKLEGFM NQRGARVPSP ILIISYETFR LHVGVLQKGS bmy_07215T0/1-691 PLAIDGGSKD EIDQKLEGFM NQRGARVPSP ILIISYETFR LHVGVLRRGS BACU000313/1-757 PLAIDGGSKD EIDQKLEGFM NQRGARVPSP ILIISYETFR LHVGVLRRGS 301 350 ENSP00000361043/1-747 VGLVICDEGH RLKNSENQTY QALDSLNTSR RVLISGTPIQ NDLLEYFSLV ENSTTRP00000005976/1-744 VGLVICDEGH RLKNSENQTY AL--SLNTSR RVLISGTPIQ NDLLEYFSLV ENSBTAP00000026513/1-749 VGLVICDEGH RLKNSENQTY QALDSLNTSR RVLISGTPIQ NDLLEYFSLV bmy_07215T0/1-691 VGLVICDEGH RLKNSENQTY QALDSLNTSR RVLISGTPIQ NDLLEYFSL- BACU000313/1-757 VGLVICDEGH RLKNSENQTY QALDSLNTSR RVLISGTPIQ NDLLEYFSLV 351 400 ENSP00000361043/1-747 HFVNSGILGT AHEFKKHFEL PILKGRDAAA SEADRQLGEE RLRELTSIVN ENSTTRP00000005976/1-744 HFVNSGILGT AQEFKKHFEL PILKGRDAAA SEEDRRLGEE RLRELISIVN ENSBTAP00000026513/1-749 HFVNSGILGT AQEFKKHFEL PILKGRDAAA SEEDRRVGEE RLRELTSIVN bmy_07215T0/1-691 ---------- ---------- ----GRDAAA SEEDRHLGEE RLRELISIVN BACU000313/1-757 HFVNSGILGT AQEFKKHFEL PILKGRDAAA SEEDRHLGEE RLRELISIVN 401 450 ENSP00000361043/1-747 RCLIRRTSDI LSKYLPVKIE QVVCCRLTPL QTELYKRFLR QAKPAEELLE ENSTTRP00000005976/1-744 RCLIRRTSDI LSKYLPVKIE QVVCCRLTPL QTELYKRFLR QAKPAEELCE ENSBTAP00000026513/1-749 RCLIRRTSDI LSKYLPVKIE QVVCCRLTPL QIELYKRFLR QAKPAEELRE bmy_07215T0/1-691 RCLIRRTSDI LSKYLPVKIE QVVCCRLTPL QTELYKRFLR QAKPAEELRE BACU000313/1-757 RCLIRRTSDI LSKYLPVKME QVVCCRLTPL QTELYKRFLR QAKPAEELRE 451 500 ENSP00000361043/1-747 GKMSVSSLSS ITSLKKLCNH PALIYDKCVE EEDGFVGALD LFPPGYSSKA ENSTTRP00000005976/1-744 GKMSVSSLSS ITSLKKLCNH PALIYDKCVE EEDGFEGTLD IFPPGYSSKA ENSBTAP00000026513/1-749 GKMSVSSLSS ITSLKKLCNH PALIYDKCVE EEDGFEGTLD IFPPGYNSKA bmy_07215T0/1-691 GNMSVSSLSS ITSLKKLCNH PALIYDKCVE EEDGFEGTLD VFPPGYSSKA BACU000313/1-757 GNMSVSSLSS ITSLKKLCNH PALIYDKCVE EEDGFEGTLD VFPPGYSSKA 501 550 ENSP00000361043/1-747 LEPQLSGKML VLDYILAVTR SRSSDKVVLV SNYTQTLDLF EKLCRARRYL ENSTTRP00000005976/1-744 LEPQLSGKML VLDYILAVTR SRSSDKVVLV SNYTQTLDLF EKLCRARRYL ENSBTAP00000026513/1-749 LEPQLSGKML VLDYILAVTR SRSSDKVVLV SNYTQTLDLF EKLCRARRYL bmy_07215T0/1-691 LEPQLSGKML VLDYILAVTR SCSSDKVVLV SNYTQTLDLF EKLCRARRYL BACU000313/1-757 LEPQLSGKML VLDYILAVTR SCSSDKVVLV SNYTQTLDLF EKLCRARRYL 551 600 ENSP00000361043/1-747 YVRLDGTMSI KKRAKVVERF NSPSSPDFVF MLSSKAGGCG LNLIGANRLV ENSTTRP00000005976/1-744 YVRLDGTMSI KKRAKVVERF NNPSSPDFVF MLSSKAGGCG LNLIGANRLV ENSBTAP00000026513/1-749 YVRLDGTMSI KKRAKVVERF NNPSSPDFVF MLSSKAGGCG LNLIGANRLV bmy_07215T0/1-691 YVRLDGTMSI KKRAKVVERF NNPSSPDFVF MLSSKAGGCG LNLIGANRLV BACU000313/1-757 YVRLDGTMSI KKRAKVVERF NNPSSPDFVF MLSSKAGGCG LNLIGANRLV 601 650 ENSP00000361043/1-747 MFDPDWNPAN DEQAMARVWR DGQKKTCYIY RLLSAGTIEE KIFQRQSHKK ENSTTRP00000005976/1-744 MFDPDWNPAN DEQAMARVWR DGQKKTCYIY RLLSAGTIEE KIFQRQSHKK ENSBTAP00000026513/1-749 MFDPDWNPAN DEQAMARVWR DGQKKTCYIY RLLSAGTIEE KIFQRQSHKK bmy_07215T0/1-691 MFDPDWNPAN DEQAMARVWR DGQKKTCYIY RLLSAGTIEE KIFQRQSHKK BACU000313/1-757 MFDPDWNPAN DEQAMARVWR DGQKKTCYIY RLLSAGTIEE KIFQRQSHKK 651 700 ENSP00000361043/1-747 ALSSCVVDEE QDVERHFSLG ELKELFILDE ASLSDTHDRL HCRRCVNSRQ ENSTTRP00000005976/1-744 ALSSCVVDEE QDVERHFSLG ELKELFTLDE ASPSDTHDRL RCHRCVNNHQ ENSBTAP00000026513/1-749 ALSSCVVDEE QDVERHFSLG ELKELFTLDE AKLSDTHDRL RCRRCVNNHQ bmy_07215T0/1-691 ALSSCVVDEE QDVERHFSLG ELKELFTLDE ASLSDTHDRL RCRRCVNNHQ BACU000313/1-757 ALSSCVVDEE QDVERHFSLG ELKELFTLDE ASLSDTHDRL RCRRCVNNHQ 701 750 ENSP00000361043/1-747 IRPPPDGSDC TSDLAGWNHC TDKWGLRDEV LQAAWDAAST AITFVFHQRS ENSTTRP00000005976/1-744 VWPPPDGSDC TSDLAQWNHS TDKRGLKDEV LQAAWDAAST AITFVFHQHS ENSBTAP00000026513/1-749 VWPPPDGSDC TSDLAQWNHS TDKRGLKDEV LQAAWDAAST AITFVFHQRS bmy_07215T0/1-691 VWPPPDGSDC TSDLAQWNHS TDKRGLKDEV LQAAWDAAST AITFVFHQHS BACU000313/1-757 VWPPPDGSDC TSDLAQWNHS TDKRGLKDEV LQAAWDAAST AITFVFHQHS 751 800 ENSP00000361043/1-747 HEEQRGLR- ENSTTRP00000005976/1-744 HEEQQGLH- ENSBTAP00000026513/1-749 HEEQRGLHL bmy_07215T0/1-691 HEEQRGLH- BACU000313/1-757 HEEQRGLH-