KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:29:09 2014  Check: 00 ..

 Name: ENSBTAP00000026518/1-176  Len:    176  Check:  808  Weight:  1.00
 Name: ENSTTRP00000011096/1-174  Len:    176  Check:  4726  Weight:  1.00
 Name: ENSP00000253794/1-176     Len:    176  Check:  723  Weight:  1.00
 Name: bmy_15648T0/1-158         Len:    176  Check:  2192  Weight:  1.00
 Name: BACU007133/1-176          Len:    176  Check:  790  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000026518/1-176  MAMSFEWPWQ YRFPPFFTLQ PNVDTRQKQL AAWCSLVLTF CRLHKQSSMT 
ENSTTRP00000011096/1-174  MAMSFEWPWQ YRFPPFFTLQ P-VDTRQKQL AAWCSLVLSF CRLHKQSSMT 
ENSP00000253794/1-176     MAMSFEWPWQ YRFPPFFTLQ PNVDTRQKQL AAWCSLVLSF CRLHKQSSMT 
bmy_15648T0/1-158         MAMSFEWPWQ YRFPPFFTLQ PNVDTRQKQL AAWCSLVLSF CRLHKQSSMT 
BACU007133/1-176          MAMSFEWPWQ YRFPPFFTLQ PNVDTRQKQL AAWCSLVLSF CRLHKQSSMT 


                          51                                                 100
ENSBTAP00000026518/1-176  VMEAQESPLF NNVKLQRKLP VESIQVVLEE LRKKGNLEWL DKNKSSFLIM 
ENSTTRP00000011096/1-174  VMEA-ESPLF NNVKLQXXXX XXXXXXXXXX XXXXXNLEWL DKNKSSFLIM 
ENSP00000253794/1-176     VMEAQESPLF NNVKLQRKLP VESIQIVLEE LRKKGNLEWL DKSKSSFLIM 
bmy_15648T0/1-158         VMEAQESPLF NNVKLQR--- ---------- -----NLEWL DKNKSSFLIM 
BACU007133/1-176          VMEAQESPLF NNVKLQRKLP VESIQVVLEE LRKKGNLEWL DKNKSSFLIM 


                          101                                                150
ENSBTAP00000026518/1-176  WRRPEEWGKL IYQWVSKSGQ NNSVFTLYEL TNGEDTEDEE FHGLDEATLL 
ENSTTRP00000011096/1-174  WRRPEEWGKL IYQWVSRSGQ NNSVFTLYEL TNGEDTEDEE FHGLDEATLL 
ENSP00000253794/1-176     WRRPEEWGKL IYQWVSRSGQ NNSVFTLYEL TNGEDTEDEE FHGLDEATLL 
bmy_15648T0/1-158         WRRPEEWGKL IYQWVSRSGQ NNSVFTLYEL TNGEDTEDEE FHGLDEATLL 
BACU007133/1-176          WRRPEEWGKL IYQWVSRSGQ NNSVFTLYEL TNGEDTEDEE FHGLDEATLL 


                          151                                                200
ENSBTAP00000026518/1-176  RALQALQQEH KAEIITVSDG RGVKFF 
ENSTTRP00000011096/1-174  RALQALQQEH KAEIITVSDG RGVKFF 
ENSP00000253794/1-176     RALQALQQEH KAEIITVSDG RGVKFF 
bmy_15648T0/1-158         RALQALQQEH KAEIITVSDG RGVKFF 
BACU007133/1-176          RALQALQQEH KAEIITVSDG RGVKFF