KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:10 2014 Check: 00 .. Name: ENSTTRP00000011099/1-1193 Len: 1312 Check: 284 Weight: 1.00 Name: ENSP00000246914/1-1243 Len: 1312 Check: 5067 Weight: 1.00 Name: ENSBTAP00000026519/1-1233 Len: 1312 Check: 2266 Weight: 1.00 Name: bmy_15647T0/1-1108 Len: 1312 Check: 5760 Weight: 1.00 Name: BACU007099/1-991 Len: 1312 Check: 7128 Weight: 1.00 // 1 50 ENSTTRP00000011099/1-1193 ---------- ---------- ---------- ---------P RRARRFSGKA ENSP00000246914/1-1243 MLASPATETT VLMSQTEADL ALRPPPPLGT AGQPRLGPPP RRARRFSGKA ENSBTAP00000026519/1-1233 MLAPPAPETE VPMSQAEADL PLRPPPTLAA AGPPRLGPPS RRVRRFSGKA bmy_15647T0/1-1108 ---------- ---------- ---------- ---------- ---------- BACU007099/1-991 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011099/1-1193 ETRPRSSRLS RRSSVDLGLL SSWSQPASPV PEPPAPPDSA GSGPAMSPQP ENSP00000246914/1-1243 EPRPRSSRLS RRSSVDLGLL SSWSLPASPA PDPPDPPDSA GPGPARSPPP ENSBTAP00000026519/1-1233 EPRPRSSRLS RRSSVDLGLL SSWSQPASPV PEPPDPPDSA GSGPAMSPPP bmy_15647T0/1-1108 ---------- ---------- ---------- ---------- -----MSPPP BACU007099/1-991 ---------- ---------- ---------- ---------- -----MSPPP 101 150 ENSTTRP00000011099/1-1193 SSEEPTEDTW TAGAPVKAA- DSERPELAGS AGGSGPREPP RITE-AAARE ENSP00000246914/1-1243 SSKEPPEGTW TEGAPVKAAE DSARPELPDS AVGPGSREPL RVPE-AVALE ENSBTAP00000026519/1-1233 SSEEPLEGMW TTGAPVKPA- DSERLEPAGS TGGSGSREQP RITEAAAARE bmy_15647T0/1-1108 SSEEPTEGTW TAGAPVKAA- DSERPELAGS AGGSGSREPP RITE-AAARE BACU007099/1-991 SSEEPTEGTW TAGAPVKAA- DSERPELAGS AGGSGSREPP RITE-AAARE 151 200 ENSTTRP00000011099/1-1193 RRREQEEKED TETQAVATSP DGRYLKFDIE IGRGSFKTVY RGLDTDTTVE ENSP00000246914/1-1243 RRREQEEKED METQAVATSP DGRYLKFDIE IGRGSFKTVY RGLDTDTTVE ENSBTAP00000026519/1-1233 RRREQEEKED TETQAVATSP DGRYLKFDIE IGRGSFKTVY RGLDTDTTVE bmy_15647T0/1-1108 RRREQEEKED TETQAVATSP DGRYLKFDIE IGRGSFKTVY RGLDTDTTVE BACU007099/1-991 RRREQEEKED TETQAVATSP DGRYLKFDIE IGRGSFKTVY RGLDTDTTVE 201 250 ENSTTRP00000011099/1-1193 VAWCELQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000246914/1-1243 VAWCELQTRK LSRAERQRFS EEVEMLKGLQ HPNIVRFYDS WKSVLRGQVC ENSBTAP00000026519/1-1233 VAWCELQTRK LSRAERQRFS EEVEMLKGLQ HPNIVRFYDS WKSVLRGQVC bmy_15647T0/1-1108 VAWCELQTRK LSRAERQRFS EEVEMLKGLQ HPNIVRFYDS WKSVLRGQVC BACU007099/1-991 VAWCELQTRK LSRAERQRFS EEVEMLKGLQ HPNIVRFYDS WKSVLRGQVC 251 300 ENSTTRP00000011099/1-1193 XXXXXXXXXX XXXXXYLRRF REMKPRVLQR WSRQILRGLH FLHSRVPPIL ENSP00000246914/1-1243 IVLVTELMTS GTLKTYLRRF REMKPRVLQR WSRQILRGLH FLHSRVPPIL ENSBTAP00000026519/1-1233 IVLVTELMTS GTLKTYLRRF REMKPRVLQR WSRQILRGLH FLHSRVPPIL bmy_15647T0/1-1108 IVLVTELMTS GTLKTYLRRF REMKPRVLQR WSRQILRGLH FLHSRVPPIL BACU007099/1-991 IVLVTELMTS GTLKTYLRRF REMKPRVLQR WSRQILRGLH FLHSRVPPIL 301 350 ENSTTRP00000011099/1-1193 HRDLKCDNVF ITGPTGSVKI GDLGLATLKR ASFAKSVIGT PEFMAPEMYE ENSP00000246914/1-1243 HRDLKCDNVF ITGPTGSVKI GDLGLATLKR ASFAKSVIGT PEFMAPEMYE ENSBTAP00000026519/1-1233 HRDLKCDNVF ITGPSGSVKI GDLGLATLKR ASFAKSVIGT PEFMAPEMYE bmy_15647T0/1-1108 HRDLKCDNVF ITGPTGSVKI GDLGLATLKR ASFAKSVIGT PEFMAPEMYE BACU007099/1-991 HRDLKCDNVF ITGPTGSVKI GDLGLATLKR ASFAKSVIGT PEFMAPEMYE 351 400 ENSTTRP00000011099/1-1193 EKYDEAVDVY AFGMCMLEMA TSEYPYSECQ NAAQIYRKVT SGTKPNSFYK ENSP00000246914/1-1243 EKYDEAVDVY AFGMCMLEMA TSEYPYSECQ NAAQIYRKVT SGRKPNSFHK ENSBTAP00000026519/1-1233 EKYDEAVDVY AFGMCMLEMA TSEYPYSECQ NAAQIYRKVT SGTKPNSFYK bmy_15647T0/1-1108 EKYDEAVDVY AFGMCMLEMA TSEYPYSECQ NAAQIYRKVT SGTKPNSFYK BACU007099/1-991 EKYDEAVDVY AFGMCMLEMA TSEYPYSECQ NAAQIYRKVT SGTKPNSFYK 401 450 ENSTTRP00000011099/1-1193 VKMPEVKEII EGCIRTDKNE RFTIQDLLAH ALFREERAVH VE-AEEDDGE ENSP00000246914/1-1243 VKIPEVKEII EGCIRTDKNE RFTIQDLLAH AFFREERGVH VELAEEDDGE ENSBTAP00000026519/1-1233 VKMPEVKEII EGCIRTDKNE RFTIHDLLAH AFFREERGVH VELAEEDDGE bmy_15647T0/1-1108 VKMPEVKEII EGCIRTDKNE RFTIQDLLAH AFFREERGVH VELAEEDDGE BACU007099/1-991 VKMPEVKEII EGCIRTDKNE RFTIQDLLAH AFFREERGVH VELAEEDDGE 451 500 ENSTTRP00000011099/1-1193 KPDLKLRLRT KDARRGGRLR DNQSIELSFQ QGRDAAEEVA QEMVALGLVC ENSP00000246914/1-1243 KPGLKLWLRM EDARRGGRPR DNQAIEFLFQ LGRDAAEEVA QEMVALGLVC ENSBTAP00000026519/1-1233 KPDLKLWLRM EDARRGGRPR DNQAIEFLFQ LGRDAAEEVA QEMVALGLVC bmy_15647T0/1-1108 KPDLKLWLRM EDARRGGRRR DNQAIEFLFQ LGRDAAEEVA QEMVALGLVC BACU007099/1-991 KPDLKLWLRM EDARRGGRRR DNQAIEFLFQ LGRDAAEGVA QEMVALGLVC 501 550 ENSTTRP00000011099/1-1193 EADYQPVARA VRERVAAIQR KREKLRKAKE LAAFPPAPGP LPAAVPMTPA ENSP00000246914/1-1243 EADYQPVARA VRERVAAIQR KREKLRKARE LEALPPEPGP PPATVPMAPG ENSBTAP00000026519/1-1233 EADYQPVARA VRERVAAIQR KREKLRKARE LEALPPAPRP PPAAVPMTPG bmy_15647T0/1-1108 EADYQPVARA VRERVAAIQR KREKLRKAKE LEAFPPAPGP LPAAVPMTPA BACU007099/1-991 EADYQPVARA VRERVAAIQR KREKLRKAKE LEAFPPAPGP LPAAVPMTPA 551 600 ENSTTRP00000011099/1-1193 PSSVFPPEPE EPEADQHQPF LFRHASYSST TSDCETDGYL SSSGFLDASD ENSP00000246914/1-1243 PPSVFPPEPE EPEADQHQPF LFRHASYSST TSDCETDGYL SSSGFLDASD ENSBTAP00000026519/1-1233 PSSAFPPEPE EPEADQHQPF LFRHASYSST TSDCETDGYL SSSGFLDASD bmy_15647T0/1-1108 PSSIFPPEPE EPEADQHQPF LFXHASYSST TSDCETDGYL SSSGFLDASD BACU007099/1-991 PSSIFPPEPE EPEADQHQPF LFRHASYSST TSDCETDGYL SSSGFLDASD 601 650 ENSTTRP00000011099/1-1193 PALQPPRGVP SCPAESHLCL PSAFALSIPR SGPGNDFSPG DSYASDAASG ENSP00000246914/1-1243 PALQPPGGVP SSLAESHLCL PSAFALSIPR SGPGSDFSPG DSYASDAASG ENSBTAP00000026519/1-1233 PALQPPSGVP SSPAESHLRL PAAFALSIPR SGPGNDFSPG ESYASEAASG bmy_15647T0/1-1108 PALQPPRGVP SSPAESHLCL PSAFALSIPR SGPGNDFSPG DSYASDAASG BACU007099/1-991 PALQPPRGVP SSPAESHLCL PSAFALSIPR SGPGNDFSPG DSYASDAASG 651 700 ENSTTRP00000011099/1-1193 LSDMGEGMEQ MRRPPGKNLR RRPRSRLRVT SVSDQNDRVV ECQLQTHNSK ENSP00000246914/1-1243 LSDVGEGMGQ MRRPPGRNLR RRPRSRLRVT SVSDQNDRVV ECQLQTHNSK ENSBTAP00000026519/1-1233 LSDVGEGMER MRRPPGKNLR RRPRSRLRVT SVSDQNDRVV ECQLQTHNSK bmy_15647T0/1-1108 LSDMGEGMEQ MRRPPGKNLR RRPRSRLRVT SVSDQNDRVV ECQLQTHNSK BACU007099/1-991 LSDMGEGMER MRRPPGKNLR RRPRSRLRVT SVSDQNDRVV ECQLQTHNSK 701 750 ENSTTRP00000011099/1-1193 MVTFRFDLDG DSPEEIAAAM XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000246914/1-1243 MVTFRFDLDG DSPEEIAAAM VYNEFILPSE RDGFLRRIRE IIQRVETLLK ENSBTAP00000026519/1-1233 MVTFRFDLDG DSPEEIAAAM VYNEFILPSE RAGFLNRIRE IIQRVETLLK bmy_15647T0/1-1108 MVTFRFDLDG DSPEEIAAAM VYNEFILPSE RAGFLNRIRE IIQRVETLLK BACU007099/1-991 MVTFRFDLDG DSPEEIAAAM VYNEFILPSE RAGFLNRIRE IIQRVETLLK 751 800 ENSTTRP00000011099/1-1193 XXXXXXXXXX XXXXPQEEPA PLPALTGYTP DASSAEFQSS T-LEQRSWAA ENSP00000246914/1-1243 RDTGPMEAAE DTLSPQEEPA PLPALPVPLP DPSNEELQSS TSLEHRSWTA ENSBTAP00000026519/1-1233 RDTGPVEAAE DPLSPQEESA PLPALPGSPP DPSRE-LQSS TSLEQRCWAA bmy_15647T0/1-1108 RDTGPVEAAE DPLGPQEEPA PLPALPGYPP DPSSAEFQSS T-LEQRSWAA BACU007099/1-991 RDTGPVEAAE DPLGPQEEPA PLPALPGYPP DPSSE----- ---------- 801 850 ENSTTRP00000011099/1-1193 FSTSPSSPGT PSSPGNPFSP GSPAFPSPIF PITSPPCHPS SSSFSPVSPQ ENSP00000246914/1-1243 FSTSSSSPGT PLSPGNPFSP GTPISPGPIF PITSPPCHPS PSPFSPISSQ ENSBTAP00000026519/1-1233 FSTSTSSPGT PLSPGSSFSP GTPVFPSPIL PITSPPCHLN PSSFSPISPQ bmy_15647T0/1-1108 FSASPSSPGT PSSPGNPFSP GSPAFPSAIF PITSPPCHPS SSSFSPISPQ BACU007099/1-991 --------GK P--------- ---------- ---------- ---------- 851 900 ENSTTRP00000011099/1-1193 VSSNLSPHPP SSPLPFSSSA SQFPVPSAQF PLNSL----- ---LPSCSQV ENSP00000246914/1-1243 VSSNPSPHPT SSPLPFSSST PEFPVPLSQC PWSSLPTTSP PTFSPTCSQV ENSBTAP00000026519/1-1233 ASSNLSPHPQ SCPLPLSPRA PQFPVPSAQF PQSSL----- ---FPDCFQG bmy_15647T0/1-1108 VPSNLSPHPP SSPLPFSPSA SQFPVPSAQF PLNSP----- ---LPSCSQV BACU007099/1-991 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000011099/1-1193 TLAPPSFPPC PSASPVPSTT AAPLLSLASA FSLAVMTVAQ SLLSPCPGLL ENSP00000246914/1-1243 TLSSPFFPPC PSTSSFPSTT AAPLLSLASA FSLAVMTVAQ SLLSPSPGLL ENSBTAP00000026519/1-1233 TPAP-SFPLC PSACPLPSTT AAPLLSLASA FSLAVMTVAQ SLLSPSPGLL bmy_15647T0/1-1108 TLAPASFPPC PSASPLPSTT AAPLLSLASA FSLAVMTVAQ SLLSPSPGLX BACU007099/1-991 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000011099/1-1193 SQPPPAPPGP LPSLPPPAPL APCGQERPSP LTSEMESEAS PNLGWPLLGE ENSP00000246914/1-1243 SQSPPAPPSP LPSLPLPPPV APGGQESPSP HTAEVESEAS PPPARPLPGE ENSBTAP00000026519/1-1233 SQSPPAPPGP LPSLPPPTPC TPCGQEWPSS LTAEVESEAS PNLGQPLPGE bmy_15647T0/1-1108 SQSPPAPPGP LPSLPPPAPL APCGQERPSP LTAEMESE-- ---------- BACU007099/1-991 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000011099/1-1193 ARLVPISEEG KPQLVGRFQV TSSKEPAEPL PLPPTSPTLS GSLKPPTPQL ENSP00000246914/1-1243 ARLAPISEEG KPQLVGRFQV TSSKEPAEPL PLQPTSPTLS GSPKPSTPQL ENSBTAP00000026519/1-1233 ARLAPISKEG KPQLVGRFQV TSSKEPAEPL PLQLASPTPS GSLKPPTPQL bmy_15647T0/1-1108 ---------- ---------- ----EPAEPL PLLPTSPTLS GSLKAPTPQL BACU007099/1-991 ---------- --QLVGRFQV TSSKEPAEPL PLQPTSPTLS GSLKAPTPQL 1051 1100 ENSTTRP00000011099/1-1193 TSESSDTEDS AGGGPEAREA LAESDRAAEG LGAGAEEEGD DGKEPRVGGS ENSP00000246914/1-1243 TSESSDTEDS AGGGPETREA LAESDRAAEG LGAGVEEEGD DGKEPQVGGS ENSBTAP00000026519/1-1233 TSESSDTEDS AGARPEAREA LAESDRAAEG LGAGAEEEGD DGQEPQVGGS bmy_15647T0/1-1108 TSESSDTEDS AGGRPEAREA LAESDRAAEG LGAGAEEEGD DGKEPRVGGS BACU007099/1-991 TSESSDTEDS AGGGPEAREA LAESDRAAEG LGAGAEEEGD DGKEPRVGGS 1101 1150 ENSTTRP00000011099/1-1193 PPPLSHPSPV WMNYSYSSLY LSSEESESSG EDEEFWAELR SLRQKHLSEV ENSP00000246914/1-1243 PQPLSHPSPV WMNYSYSSLC LSSEESESSG EDEEFWAELQ SLRQKHLSEV ENSBTAP00000026519/1-1233 PPPLSHPSPV WMSYSYSSLC LSSEESESSG EDEEFWAELQ NLRQKHLSEV bmy_15647T0/1-1108 PPPLSHPSPV WMNYSYSSLC LSSEESESSG EDEEFWAELR SLRQKHLSEV BACU007099/1-991 PPPLSHPSPV WMNYSYSSLC LSSEESESSG EDEEFWAELR SLRQKHLSEV 1151 1200 ENSTTRP00000011099/1-1193 EALQTLQKQE IEDLYSRLGK QPPPGIVAPA AMLSSRQRRL SKGSFPTSRR ENSP00000246914/1-1243 ETLQTLQKKE IEDLYSRLGK QPPPGIVAPA AMLSSRQRRL SKGSFPTSRR ENSBTAP00000026519/1-1233 EALQTLQKQE IEDLYSRLGK QPPPGIVAPA AMLSSRQRRL SKGSFPTSRR bmy_15647T0/1-1108 EALQTLQKQE IEDLYSRLGK QPPPGIVAPA AMLSSRQRRL SKGSFPTSRR BACU007099/1-991 EALQTLQKQE IEDLYSRLGK QPPPGIVAPA AMLSSRQRRL SKGSFPTSRR 1201 1250 ENSTTRP00000011099/1-1193 NSLQRSEPLG P--------- GIMRRNSLSG SSTGSQEQRA SKGVTFARDV ENSP00000246914/1-1243 NSLQRSEPPG P--------- GIMRRNSLSG SSTGSQEQRA SKGVTFAGDV ENSBTAP00000026519/1-1233 NSLQRSEPLG P--------- GIMRRNSLSG SSTGSQEQRA SKGVTFAGDV bmy_15647T0/1-1108 NSLQRSELLG PV-------- NSEQKPCVSS TPGPTVELVL SESADQHNSA BACU007099/1-991 NSLQRSELLG PVLSLPILHP GIMRRNSLSG SSTGSQEQRA SKGVTFARDV 1251 1300 ENSTTRP00000011099/1-1193 GRM------- ---------- ---------- ---------- ---------- ENSP00000246914/1-1243 GRM------- ---------- ---------- ---------- ---------- ENSBTAP00000026519/1-1233 GRM------- ---------- ---------- ---------- ---------- bmy_15647T0/1-1108 RKTSTLRE-- ---------- ---------- ---------- ---------- BACU007099/1-991 GRMAPTLHRA ATLTPIKSPP LVLHPPSQTL NGINHKVRKL GKSQGQIPRT 1301 1350 ENSTTRP00000011099/1-1193 ---------- -- ENSP00000246914/1-1243 ---------- -- ENSBTAP00000026519/1-1233 ---------- -- bmy_15647T0/1-1108 ---------- -- BACU007099/1-991 RKLGKGVSGH TQ