KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:16 2014 Check: 00 .. Name: ENSP00000349274/1-1209 Len: 1257 Check: 5874 Weight: 1.00 Name: ENSBTAP00000026527/1-1173 Len: 1257 Check: 7907 Weight: 1.00 Name: ENSTTRP00000000010/1-1155 Len: 1257 Check: 7958 Weight: 1.00 Name: bmy_22351T0/1-1189 Len: 1257 Check: 9064 Weight: 1.00 Name: BACU016181/1-1141 Len: 1257 Check: 3047 Weight: 1.00 // 1 50 ENSP00000349274/1-1209 MFLMNASPVV ALQSKWEAFG PPGSCRFPRC FSEADEGVES ASVSARVQML ENSBTAP00000026527/1-1173 MFLMNAPPVL ALRSAWEAFG PPGSCRFPRC FSEPREGVSR VAASAQVQMA ENSTTRP00000000010/1-1155 MYLMNAPPVL ALPSKWEAFG PPGSCRFPGC FSEPKEGVPR AAVSAKVQAV bmy_22351T0/1-1189 MFLMNAPPVL ALPSKWEAFG PPGSCRFPGC FSEPKEGVSR AAVSAKVQMV BACU016181/1-1141 ---------- ---------- ---------- ---------- --------MV 51 100 ENSP00000349274/1-1209 ISTLQRD-GA ARGTSDERAA QRGHRAEGCH DARPAAKPTV HKEPPALAVC ENSBTAP00000026527/1-1173 ISRLQGD-GA ALGMSGDHAR PGSQRAERGR GSLPTA---- ---SPAFAAY ENSTTRP00000000010/1-1155 ISTLQGD-GA ALGMSGEHGR QRSQRAERGR GTRLAT---- ---SPTFAAC bmy_22351T0/1-1189 ISTLQGDGGA ALGMSGEHAR QRSQRAERGR GTRLAT---- ---SPAFAAC BACU016181/1-1141 ISTLQGDGGA ALGMSGEHAR QRSQRAERGR GTRLAT---- ---SPAFAAC 101 150 ENSP00000349274/1-1209 GLVADFDP-M GEEETTDFGP LVLDSDSDDS VDRDIEEAIQ EYLKAKSGAA ENSBTAP00000026527/1-1173 GLATGLDPKR EEEEASNLGP LVPDSDSDDS VDRDIEEAIQ EYLRAKSGAA ENSTTRP00000000010/1-1155 GLAVGFDP-K GEEEAADLGP LVLDSDSDDS VDRDIEEAIQ EYLKAKSGAA bmy_22351T0/1-1189 GLAAGFDP-R GEEEAADLGP LVPDSDSDDS VDRAIEEAIQ EYLKAKSGAA BACU016181/1-1141 GLAAGFDP-R GEEEAADLGP LVPDSDSDDS VDRAIEEAIQ EYLKAKSGAA 151 200 ENSP00000349274/1-1209 QPGAGGAQPG AAQPSRAAGG GSRCKPEPAH GSAPTALCPP KLVPGSGGGP ENSBTAP00000026527/1-1173 PPPAAG---- --------DA ARRCGPEPAL SGAPAAPCPP NPAAGPSPV- ENSTTRP00000000010/1-1155 RPPAAG---- ---------- --RCKPEPPP SSTPTALCPP DLAAGPTGVP bmy_22351T0/1-1189 RPPAAS---- ---------- --RCEPEPPP SGTPTALCPP DLAAGPTAVP BACU016181/1-1141 RPPAAS---- ---------- --RCEPEPPP SGTPTALCPP DLAAGPTAVP 201 250 ENSP00000349274/1-1209 GSQVGSSKDQ GSASPVSVSS DDSFEQSIRA EIEQFLNEKR QHETQKCDGS ENSBTAP00000026527/1-1173 ---------Q GSASPLSVSS DDSFEQSIQA EIEQFLSEKR LHETQKGDLP ENSTTRP00000000010/1-1155 GSHRGVGQDQ GSASPLSVSS EDSFEQSIRA EIEQFLSEKR QHETQKCDVP bmy_22351T0/1-1189 GSHGGVGEDR GSASPLSVSS EDSFEQSIRA EIEQFLSEKR QHETQKCDIP BACU016181/1-1141 GSHRGVGEDR GSASPLSVSS EDSFEQSIRA EIEQFLSEKR QQENQKCDIP 251 300 ENSP00000349274/1-1209 VEKKPDTNEN SAKSLLKSHQ EPPTKVVHRQ GLLGVQKEFA FRKPPRLAKM ENSBTAP00000026527/1-1173 ADRKADPGDS LARATCRPGR EPPLK-APQQ DLPGTGKEFV FRKLPRSAKA ENSTTRP00000000010/1-1155 ADKKPDPADS LAQSASRSSR EPTGK-AYQQ ELAGACKEFT FRKPPRSTKA bmy_22351T0/1-1189 ADRKPEPSDS SARSASRSSK EPTGK-AQQQ ELAGACKEFI FRKPPRSAKA BACU016181/1-1141 ADRKPDPSDS SARSVSRSSK EPTGK-AQQQ ELAGACKEFI FRKPPRSAKA 301 350 ENSP00000349274/1-1209 NVQPRSLRSK VTTTQENEGS TKPATPCRPS EAAQNKGGIK RSASAARRGK ENSBTAP00000026527/1-1173 SALPRGLRCK VTAEPAAAAT AGP-----PA EAAPGKGRVR RGAGSARKGR ENSTTRP00000000010/1-1155 GALPRGPRCK VTVSPAA--- AGR-----PA EAAPGKVGVR RGTGSGKRGR bmy_22351T0/1-1189 GALPRGPRSR VTVEPATA-- AGR-----PA EAAPGKGGVR RGTGSGKRGR BACU016181/1-1141 GVLPRGPRSK VTVEPATA-- AGR-----PA EAAPGKGGVR RGTGSAKRGR 351 400 ENSP00000349274/1-1209 RVMSAAQASE ASDSSSDDGI EEAIQLYQLQ KTRKEADGDL PQRVQLREER ENSBTAP00000026527/1-1173 QPRSVALVHE EPDSSSDDGI EEAIRLYQRE R-RREVRGH- -QGPLPTEEK ENSTTRP00000000010/1-1155 RARSAALVPE AVDSSSDDGI EEAIQLYQLE K-RKEAGGEP PQRALPAEEK bmy_22351T0/1-1189 RARSAALVPE AADSSSDDGI EEAIQLYQLE K-RKEAGGEP PQRALPAEEK BACU016181/1-1141 RARSAALVPE AADSSSDDGI EEAIQLYQLE K-RKEAGGEP PQRALPAEEK 401 450 ENSP00000349274/1-1209 APDPPAHSTS SATKSALPET HRKTPSKKKL VATKTMDPGP GGLDTDHAPK ENSBTAP00000026527/1-1173 GPVAPAHS-- --LRGPWPEA LSKTPGKKKP AAPKATDLGP GGPDSEHPPR ENSTTRP00000000010/1-1155 GPGPPAHGTG LCTKSTWLEG HGKTPGKKKP VATKAADFSP GGLDPDHPSR bmy_22351T0/1-1189 GPGPPAHGAG LCTKSTWPEA HGKTPGKKKP VATKTADLSP GGLDPDHPSR BACU016181/1-1141 GPGVPAHGTG LCTKSTWPEA HGKTPGKKKP VAAKAADLSP GALDPDHPSR 451 500 ENSP00000349274/1-1209 LLKETKAP-P PASPASRSEF VERSSCRADT SAELMCAEAI LDISKTILPA ENSBTAP00000026527/1-1173 PPRETTAPVP PGSAAAESLG VDGSPCRADT SAELMCAEAI LDISKTILPA ENSTTRP00000000010/1-1155 PPRETVAPAP PGSTAAESKS VDGSPCRADT SAELMCAEAI LDISKTILPG bmy_22351T0/1-1189 PPRETVAPAP PGSTAAESKF VDGSPCRADT SAELMCAEAI LDISKTILPG BACU016181/1-1141 PPRETMAPAP LGSTAAESKF VDGSPCRADT SAELMCAEAI LDISKTILPG 501 550 ENSP00000349274/1-1209 PVEGSDGSLS ASPLFYSPNV PSRSDGDSSS VDSDDSIEQE IRTFLALKAQ ENSBTAP00000026527/1-1173 PVDGGERPPP TSPLRQGPD- -----GNSSA VDSDDSIERE IRTFLALKAQ ENSTTRP00000000010/1-1155 PLEGGTRSPP TSPLLYPHDV PSCSDGDSSS VDSDDSIEQE IRTFLALKAQ bmy_22351T0/1-1189 PLEGGTRPPP ASPLLYPPDV PSCSDGDSSS VDSDDSIEQE IRTFLALKAQ BACU016181/1-1141 PLEGGTRPPP ASPLLYPPDV PSCSDGDSSS VDSDDSIEQE IRTFLALKAQ 551 600 ENSP00000349274/1-1209 SGSLLARGES CPQAAQGPLL PPGLNSQTGG HKTPLSKTPD PLLGCKRKRR ENSBTAP00000026527/1-1173 SGGPLPHTET CARPAHSPPL PPSLSA---- ---PAPDTPD PSPGCRRRRS ENSTTRP00000000010/1-1155 SGGLLPRTET CPPPAHSPLL PSGLSA---- ---SASKTPD LSLSCKRKRG bmy_22351T0/1-1189 SGALLPRTET CPRPAHSPLL LPGLSA---- ---SASKTPD LSLSCKRKRG BACU016181/1-1141 SGGLLPRMET CPRPAHSPLL PPGLSA---- ---SASKTPD LSLSCKRKRG 601 650 ENSP00000349274/1-1209 GGGH-VRPST PKKMQEV--V KDGSQDADHS QGRAEPGHER RDLPIQGKAS ENSBTAP00000026527/1-1173 R-----MPCM PRRPRDTAEM QD-AQDAERG QGRVQPG--- -----QGRAP ENSTTRP00000000010/1-1155 GGSTAVRPCT PKRTRDTAEA QEGARDADRS QGRAQPS--- -----QGKAS bmy_22351T0/1-1189 AGSTAVRPCA PKRTRETAEA QESARDADRS LGRAQPS--- -----QGKAG BACU016181/1-1141 AGSTAVRPCA PKRTRETAEA QESARDADRS LGRAQPS--- -----QGKAS 651 700 ENSP00000349274/1-1209 EALGGEGTA- RGP------- ---------- GDTRMSQGQG KTDEARRLDE ENSBTAP00000026527/1-1173 EAPRRESES- RGPPLPFKTG GPGDELGAPD PLGAAPPGPR QTAEGRRGDV ENSTTRP00000000010/1-1155 EAPGREGETA RGP------- ---------- GHATVLPGPG KAAEARRVDE bmy_22351T0/1-1189 EAPGREGET- WGQPLPCRMG MPGDEHGAPV TQGTVLPGPG KAAEARRVDE BACU016181/1-1141 EAPGREGET- WGQPLPCRTG VPGDEHRAPV TQCTVLLGPG KAAEARRVDE 701 750 ENSP00000349274/1-1209 KESSEDKSSS LDSDEDLDTA IKDLLRSKRK LKKRCREPRA ACRKKVRFST ENSBTAP00000026527/1-1173 QASSEEKSSS LDSDEDLDTA IKDLLRSKRR LRKRHRDPRA SCKKRVRFST ENSTTRP00000000010/1-1155 KESSEDKSSS LDSDEDLDTA IKDLLRSKRR LRKRCKDPRA GCKKRVRFST bmy_22351T0/1-1189 KESSEDKSSS LDSDEDLDTA IKDLLRSKRR LRKRCKDPRA GCKKRVRFST BACU016181/1-1141 KESSEDKSSS LDSDEDLDTA IKDLLRSKRR LRKRCKDPRA GCKKRVRFST 751 800 ENSP00000349274/1-1209 AQTHFLEQLG GLRRDWKDRG PPVLKSCLSK SKRDSGEGPG KKPPSVFGST ENSBTAP00000026527/1-1173 TETQFLDKLG GFQKDWRDRS PHLLKSCLSK SRRDSRETPG -RPPHIPSQE ENSTTRP00000000010/1-1155 TETQFLDKVG GFPKDWKDRS PHLLKSCLYK SRK----EPG -RPSHVLCXX bmy_22351T0/1-1189 TETQFLDKVG GFPKDWKDRS PHLLKSCLSK SKK---ESPG -RPSHVLCRE BACU016181/1-1141 TETQFLDKVG GFPKDWKDRS PHLLKSCLSK SKK---ESPG -RPSHVLCRE 801 850 ENSP00000349274/1-1209 AERMRQEGAA SQDA---ALA FRVR-RPASA SASEGNPFPR ESQGPAPSPG ENSBTAP00000026527/1-1173 TSRAKADGSG LEDAPSGPSA PWTRGRAAPR GLFSRESEAR EPPGAARSPS ENSTTRP00000000010/1-1155 XXXXXXXXXX XXX----XXX XXXXXXXXXX XXXXXXXXXR ELRGPAPSPS bmy_22351T0/1-1189 AVRAKPDGVA AEDA---PPA ARSRGQAAGG SLFSGESEAR ELHGPAPSPS BACU016181/1-1141 AVRAKPDGVA AEDA---PPA ARSRGQAAGG SLFSGESEAR ELHGPAPSPS 851 900 ENSP00000349274/1-1209 SLSDDSSSVD SNDSIELEIR KFLAEKAKES VSSSEVQAEG PTALGTGGPA ENSBTAP00000026527/1-1173 SLSDDSSSID SDDSIELEIR KFLAEKAKES VSGSEIPGGG PATLGTPTGA ENSTTRP00000000010/1-1155 SLSDDSSSVD SDDSIELEIR KFLAEKAKES VSGSDIQGGG PTALGTGNGG bmy_22351T0/1-1189 SLSDDSSSVD SDDSIELEIR KFLAEKAKES VSGSEIQGGG PTALGTGSGG BACU016181/1-1141 SLSDDSSSVD SDDSIELEIR KFLAEKAKES VSGSEIQGGG PTALGTASGG 901 950 ENSP00000349274/1-1209 RPEVLCRKEP AP----PPGV CTRSQRARG- VPHLAEGLRG TESAGAQGTA ENSBTAP00000026527/1-1173 RPELPGRKAP PPGPAAQPGM CTRSQRVRGG LPPGAEGPRG PGRALAPGGG ENSTTRP00000000010/1-1155 KPELPCRKVL PPGPALQPGM CTRSQRCRGP LQP-AEGPRG PGRAFAPAGR bmy_22351T0/1-1189 RPELPCRKVP PPGPALQPGM CTRSQRCRGP LQP-AEGPRG PGRAFAPAGR BACU016181/1-1141 RPELPCRKVP PPGPALQPSM CTRSQRCRGP LQP-AEGPRG PGRAFTPAGR 951 1000 ENSP00000349274/1-1209 GLFSQGGKGL PAAPARGDPV PPRSTSGGVS AKGLSVSRRN VYVHKDQSPR ENSBTAP00000026527/1-1173 SSPHPEQPCP PAALARCELA PPRSTSGPTP AKGSPAPRRN ICAPRDPGPR ENSTTRP00000000010/1-1155 SSPRAEG--L PAALARCELV PPRSASGTAS AKGSPASRRT AYAPKDKSPR bmy_22351T0/1-1189 SSPRAEQACS PAALARCELV PPRSTSGTAS AKGSPASRRT AYAPKDKSPR BACU016181/1-1141 SSPRAEQACS PAALARCELV PPRGTSGTAS AKGSPASRRT AYAPKDKSPR 1001 1050 ENSP00000349274/1-1209 GAEPAA-KSA FGQLPSCATA GTEAGGARGT FHMGCGSPSF LTPSPGAERD ENSBTAP00000026527/1-1173 GPEGVTGEGT FGQLPSHAEA GARVEG---- -------HSS LARTPGSQRD ENSTTRP00000000010/1-1155 GAEAAAGESA LAQLPSCMEA GARAES---- -------RSS LARTPGAERE bmy_22351T0/1-1189 GAEAAAGESA LGQLPSCMEA GTRAES---- -------RSP LARTPGAERE BACU016181/1-1141 GAEAAAGESA LGQLPSCMEA GTRAES---- -------RSP LARTPGTERE 1051 1100 ENSP00000349274/1-1209 AGAQADRTPP WSDFAHQSRL PSPWVLRSEG RDAV-WRGGV GSERDKGSEG ENSBTAP00000026527/1-1173 GVPRAGLTLP WSDLSPQSRL QSTWVLGPEG RDVAAWRGGL GGQREKGPEG ENSTTRP00000000010/1-1155 GRLRAGLALP WTDFSPQSRL QSTWALSTKG RDAAAWKGGL RGQREKRLEG bmy_22351T0/1-1189 GRPRAGLALP WADFAPQSRL QSTWALSTKG RDAAAWKGGL RGQREKGLEG BACU016181/1-1141 GRPRAGLTLP WADFAPQSRL QSTWALSTKG RDTAAWKGGF RGQREKGLEG 1101 1150 ENSP00000349274/1-1209 PARGLPS--- -----LPLAG FSPLLSTQLF HFGKGVSWGG RQAGLFSPHL ENSBTAP00000026527/1-1173 QARGSPSLAT DSRRGLPFAG FSPLLSTQLF HFGKSMPWGA KQASLFSPGL ENSTTRP00000000010/1-1155 QARGSPS--- -----LPFAG FSPLLSTQLF HFGKSVSWGG KQASLFSPPL bmy_22351T0/1-1189 QARGSPSLAM DPKRGLPFAG FSPLLSTQLF HFGKSVSWGG KQASLFSPPL BACU016181/1-1141 QARGSPSLAM DPKRGLPFAG FSPLLSTQLF HFGKSVSWGG KQASLFSTPL 1151 1200 ENSP00000349274/1-1209 GLPLQGPSFS AFREAQAGPS PVFGSPHLLA KKDGGPWPTR KAQAGLSLHD ENSBTAP00000026527/1-1173 GLPLQGPSFS AFREAQATRN PVFGSPRLLV K-EGGRWPCR KPRAGLSLSD ENSTTRP00000000010/1-1155 SLPLQGASFS AFRETQAGHG PVFGSSHLLV KQEGGRWPPR KSQAGLSLPD bmy_22351T0/1-1189 SLPLQGPSFS AFRETQAGHG PVFGSSHLLV KQEGGRWPPR KSQAGLSLPD BACU016181/1-1141 SLPLQGPSFS AFRETQAGHG PVFGSSHLLV KQEGGRWPPR KSQAGLSLPD 1201 1250 ENSP00000349274/1-1209 RRSSGSEESI LDLRYRRR-V NRDDQEQDAL GSDASDFSDT STEDSGG--- ENSBTAP00000026527/1-1173 RRGSGPEESV LDLRFGRRGL DRDDEEPEAL GSDASELSDT SVEEGGGPTA ENSTTRP00000000010/1-1155 RRNSGPEESI LDLRYRRRGV DRDDEDQEVL GSDASEFSDA SVEEGGSLLA bmy_22351T0/1-1189 RRNSGPEESI LDLRYRRSGV DGDDEDQEAL GSDASEFSDA SMEEGGSPLA BACU016181/1-1141 RRNSGPEESI LDLRYRRSRV DGDDEDQEAL GSDASEFSDA SVEEGGSPLA 1251 1300 ENSP00000349274/1-1209 -SSVVKV ENSBTAP00000026527/1-1173 QGPVLQL ENSTTRP00000000010/1-1155 KGP---- bmy_22351T0/1-1189 KGPVLQL BACU016181/1-1141 KGPVLQL