KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:18 2014 Check: 00 .. Name: ENSTTRP00000011119/1-268 Len: 297 Check: 6553 Weight: 1.00 Name: ENSP00000293362/1-267 Len: 297 Check: 4827 Weight: 1.00 Name: ENSBTAP00000026535/1-254 Len: 297 Check: 2854 Weight: 1.00 Name: bmy_17081T0/1-270 Len: 297 Check: 2001 Weight: 1.00 Name: BACU012971/1-245 Len: 297 Check: 2667 Weight: 1.00 // 1 50 ENSTTRP00000011119/1-268 MASLLKVDQE VKLKVDSFRE RITSEAEDLV ANFFPKKLLE LDSFLKEPIL ENSP00000293362/1-267 MASLLKVDQE VKLKVDSFRE RITSEAEDLV ANFFPKKLLE LDSFLKEPIL ENSBTAP00000026535/1-254 MASLLKVDQE VKLKVDSFRE RITSEAEDLV ANFFPKKLLE LDSFLKEPIL bmy_17081T0/1-270 MASPLKLEQD VQGKVDSFRA RIAQEAEDLV STFFPQKLSE LDSWVQE--L BACU012971/1-245 MASPLKLEQD VQGKVDSFRA RIAQEAEDLV STFFPQKLSE LDSWVQE--L 51 100 ENSTTRP00000011119/1-268 NIHDLTQIHS DMNLPVPDPI LLTNSHDGLD GXXXXXXXXX XXXXXXXXTK ENSP00000293362/1-267 NIHDLTQIHS DMNLPVPDPI LLTNSHDGLD GPTYKKRRLD ECEEAFQGTK ENSBTAP00000026535/1-254 NIHDLTQIHS DMNLPVPDPI LLTNSHDGLD GPTYKKRRLD ECEEAFQGTK bmy_17081T0/1-270 RLQDLSRIRS ---VPAPETP VAPDTAG--D GPNRDPLPL- ---QTQSSIK BACU012971/1-245 RLQDLSIIRS ---VPAPETP VAPDTAG--D GPNRDRLPL- ---QTQSSIK 101 150 ENSTTRP00000011119/1-268 VFVMPNG--- MLKSNQQLVD IIEKVK-EIR LLIEKCNT-K GQGPHIYFGL ENSP00000293362/1-267 VFVMPNG--- MLKSNQQLVD IIEKVKPEIR LLIEKCNTPS GKGPHICFD- ENSBTAP00000026535/1-254 VFVMPNG--- MLKSNQQLVD IIEKVKPEIR LLIEKCNT-- ---------- bmy_17081T0/1-270 VLALPDGEGQ LLRSNQHLVE LIQHVKPEIE LLREKCNT-- ---------- BACU012971/1-245 VLALPGGEGQ LLRSNQHLVE LIQHVKPEIE LLREKCST-- ---------- 151 200 ENSTTRP00000011119/1-268 LTLQVKMWVQ LLIPRIEDGN NFGVSIQEET VAELRTVESE AASYLDQISR ENSP00000293362/1-267 --LQVKMWVQ LLIPRIEDGN NFGVSIQEET VAELRTVESE AASYLDQISR ENSBTAP00000026535/1-254 ----VKMWVQ LLIPRIEDGN NFGVSIQEET VAELRTVESE AASYLDQISR bmy_17081T0/1-270 ----VRMWVQ LLLPKAEDGN NFGVSIQEDT ADQLWTVEST AASYLRRFST BACU012971/1-245 ----VRMWVQ LLLPKAEDGN NFGVSIQEDT ADQLWTVEST AASYLRRFST 201 250 ENSTTRP00000011119/1-268 YYITRAKLVS KIAKYPHVED YRRTVTEIDE KEYISLRLII SELRNQYVTL ENSP00000293362/1-267 YYITRAKLVS KIAKYPHVED YRRTVTEIDE KEYISLRLII SELRNQYVTL ENSBTAP00000026535/1-254 YYITRAKLVS KIAKYPHVED YRRTVTEIDE KEYISLRLII SELRNQYVTL bmy_17081T0/1-270 YYNTQAKLVS KIVKYPQVED YRRTVDEVDE NEYQSVRQIL LHVRNQYATL BACU012971/1-245 YYNTQAKLVS KTVKYPQVED YRRTVAEVNE KEYQSVRQIL LHVRNQYATL 251 300 ENSTTRP00000011119/1-268 HDMILKNIEK IKRPRSSNAE TLY------- ---------- ------- ENSP00000293362/1-267 HDMILKNIEK IKRPRSSNAE TLY------- ---------- ------- ENSBTAP00000026535/1-254 HDMILKNIEK IKRPRSSNAE TLY------- ---------- ------- bmy_17081T0/1-270 HDVTLKNIEK IETPRSTNTD NLYRGPFSTP LSFRSWXSCS GSWKAGS BACU012971/1-245 HDVTLKNIEK IETPRSSNAD NL-------- ---------- -------