KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:22 2014 Check: 00 .. Name: ENSTTRP00000006037/1-305 Len: 384 Check: 5344 Weight: 1.00 Name: ENSP00000356218/1-305 Len: 384 Check: 3812 Weight: 1.00 Name: ENSBTAP00000026548/1-303 Len: 384 Check: 7230 Weight: 1.00 Name: bmy_09448T0/1-357 Len: 384 Check: 18 Weight: 1.00 Name: BACU009779/1-327 Len: 384 Check: 3555 Weight: 1.00 // 1 50 ENSTTRP00000006037/1-305 ---------- ---------- --MGLQTXXX XXXXXXXXXX XXXXXXXXXX ENSP00000356218/1-305 ---------- ---------- --MGIQTSPV LLASLGVGLV TLLGLAVGSY ENSBTAP00000026548/1-303 ---------- ---------- ----CLQSPV LLASLGVGLL TLLGVALGAY bmy_09448T0/1-357 ---------- ---------- -------SPV LLASLGVGLL TLLGLALGSY BACU009779/1-327 MMGLQPVRPS LRMPHQGTPP LMVPGTQSPV LLASLGVGLL TLLGLALGSY 51 100 ENSTTRP00000006037/1-305 XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- ---------- ENSP00000356218/1-305 LVRRSRRPQV TLLDPNEKYL LRLLDKT--- ---------- ---------- ENSBTAP00000026548/1-303 LVRRSRRPPV TLLDPNEKYQ LRLLDKT--- ---------- ---------- bmy_09448T0/1-357 LVRRSRRPRI TLLDPNEKYL LRLLDKTVSC GVAEGTGVPL GCGWDAPGSW BACU009779/1-327 LVRRSRRPRI TLLDPNEKYL LRLLDKT--- ---------- ---------- 101 150 ENSTTRP00000006037/1-305 ---------- -----TMSHN TERFRLALHY AHHVLGLQEG QHVYLSARID ENSP00000356218/1-305 ---------- -----TVSHN TKRFRFALPT AHHTLGLPVG KHIYLSTRID ENSBTAP00000026548/1-303 ---------- -----TVNHN TKRFRFALPT AHHVLGLPVG KHVYLSARID bmy_09448T0/1-357 RHQTCLVRRL SSILQTVNHN TKRFRFALPT PHHVLGLPVG KHVYLSARID BACU009779/1-327 ---------- -----TVNHN TKRFRFALPT AHHVLGLPVG KHVYLSARID 151 200 ENSTTRP00000006037/1-305 GSLVIRPYTP ITSDEDQGYV DLVIKVYLKG VHPKFPEGGK MSQYLDSLKT ENSP00000356218/1-305 GSLVIRPYTP VTSDEDQGYV DLVIKVYLKG VHPKFPEGGK MSQYLDSLKV ENSBTAP00000026548/1-303 GSLVIRPYTP VTSDEDQGYV DLVIKVYLKG VHPKFPEGGK MSQYLDSLKI bmy_09448T0/1-357 GSLVIRPYTP ITSDEDQGYV DLVIKVYLKG VHPRFPEGGK MSQYLDSLKT BACU009779/1-327 GSLVIRPYTP ITSDEDQGYV DLVIKVYLKG VHPRFPEGGK MSQYLDSLKT 201 250 ENSTTRP00000006037/1-305 GDMVEFRGPS GLLTYAGKGM FSIQPNKKSP PEPRVARKLG MIAGGTGITP ENSP00000356218/1-305 GDVVEFRGPS GLLTYTGKGH FNIQPNKKSP PEPRVAKKLG MIAGGTGITP ENSBTAP00000026548/1-303 GDVVEFRGPS GLLTYAGKGK FNIQPNKKAP PEARVARNLG MIAGGTGITP bmy_09448T0/1-357 GDVVEFRGPS GLLTYAGKGM FSIQPNKKSP PEPRVARKLG MIAGGTGITP BACU009779/1-327 GDVVEFRGPS GLLTYAGKGM FSIQPNKKSP PEPRVARKLG MIAGGTGITP 251 300 ENSTTRP00000006037/1-305 MLQLIQAILK DPEDPTQCFL LFANQ----- ---------- ----TEKDII ENSP00000356218/1-305 MLQLIRAILK VPEDPTQCFL LFANQ----- ---------- ----TEKDII ENSBTAP00000026548/1-303 MLQLIRAILK DPEDPTQCFL LFANQ----- ---------- ----TEKDII bmy_09448T0/1-357 MLQLIQAILK DPEDPTQCFL LFANQVALLF SVLGLQSYCV GRGVTEKDII BACU009779/1-327 MLQLIQAILK DPEDPTQCFL LFANQ----- ---------- ----TEKDII 301 350 ENSTTRP00000006037/1-305 LREDLEELQA RHPDHFTLWF TLDHPPEDWA YSKGFVSADM IQEHLPAPGE ENSP00000356218/1-305 LREDLEELQA RYPNRFKLWF TLDHPPKDWA YSKGFVTADM IREHLPAPGD ENSBTAP00000026548/1-303 LREDLEELQA RHPGRFKLWF TLDHPPEGWA YSKGFVSVDM IREHLPAPGE bmy_09448T0/1-357 LREDLEELQA RHPNHFKLWF TLDHPPEDWA YSKGFVSADM IQEHLPAPGE BACU009779/1-327 LREDLEELQA RHPNHFKLWF TLDHPPEDWA YSKGFVSADM IQEHLPAPGD 351 400 ENSTTRP00000006037/1-305 DVLLLLCGPP AMVQLACHPN LDKLGYSQRM RFTY ENSP00000356218/1-305 DVLVLLCGPP PMVQLACHPN LDKLGYSQKM RFTY ENSBTAP00000026548/1-303 DVLLLLCGPP PMVQLACHPS LDKLGYSPKM RFTY bmy_09448T0/1-357 DMLLLLCGPP PMVQLACHPN LDKLGYSQKM RFTY BACU009779/1-327 DMLLLLCGPP PMVQLACHPN LDKLGYSQKM RFTY