KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:23 2014 Check: 00 .. Name: ENSTTRP00000012033/1-241 Len: 265 Check: 4721 Weight: 1.00 Name: ENSP00000297873/1-245 Len: 265 Check: 9438 Weight: 1.00 Name: ENSBTAP00000026552/1-256 Len: 265 Check: 349 Weight: 1.00 Name: bmy_00377T0/1-248 Len: 265 Check: 9165 Weight: 1.00 Name: BACU012014/1-247 Len: 265 Check: 6592 Weight: 1.00 // 1 50 ENSTTRP00000012033/1-241 ---------M ALEEGRSLPE VRARVGASHG ITDLAHKLHF YDQWAPDYDQ ENSP00000297873/1-245 ---------M AQEEGGSLPE VRARVRAAHG IPDLAQKLHF YDRWAPDYDQ ENSBTAP00000026552/1-256 RALGGPCPHS RMAEGRSLPE VRALVGASHG ITDLAHKLHF YDQWAPNYDQ bmy_00377T0/1-248 -MEAVSHRRM ALEEGRSLPE TTQKEVPQ-- --TLGHGVAV GAALCP---Q BACU012014/1-247 ---------M ALEEGRSLPE VRARVAASHG ITDLAHKLHF YDQWAPDYDQ 51 100 ENSTTRP00000012033/1-241 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXCGTGLV AAELQARGFL ENSP00000297873/1-245 DVATLLYRAP RLAVDCLTQA LPGPPHSALI LDVACGTGLV AAELRAPGFL ENSBTAP00000026552/1-256 DVAALQYRAP RLAVDCLMQA LPGPHHAAPI LDAACGTGLV AAELQARGFH bmy_00377T0/1-248 DVAALQYRAP RLAVDCLTQA LPGPPHAALI LDVACGTGLV AAELQARGFL BACU012014/1-247 DVAVLRYCAP RLAVDCLTQA LPGPPHAALI LDVACGTGLV AAELQARGCL 101 150 ENSTTRP00000012033/1-241 QLHGVDGSPG MLEQARARGL YQRLSLCTLG QEPLPSSEGT FDAVLVVGAL ENSP00000297873/1-245 QLHGVDGSPG MLEQAQAPGL YQRLSLCTLG QEPLPSPEGT FDAVLIVGAL ENSBTAP00000026552/1-256 QLHGVDGSPG MLDQARARGL YQCLNLCILG QEPLPSAEGT FDAVLMVGAL bmy_00377T0/1-248 QLHGVDGSPG MLEQARARGL YQHLSLCTLG QEPLPSSEGT YDAVLTVGAL BACU012014/1-247 QLHGVDGSPG MLEQARARGL YQHLSLCTLG QEPLPSSEGT YDAVLTVGAL 151 200 ENSTTRP00000012033/1-241 SDGQVPCSAL PELLRVTKPG GLLCLTTRTN PSNLRYKEAL EATLARLEQA ENSP00000297873/1-245 SDGQVPCNAI PE-LHVTKPG GLVCLTTRTN SSNLQYKEAL EATLDRLEQA ENSBTAP00000026552/1-256 SDGQVPCSAI PELLRVTKPG GLVCLTTRTN PSNLRYKEVL EATLDRLEQA bmy_00377T0/1-248 SDGQVPCSAV PELLRVTKPG GLLCLTTRTN PSNLRYKEAL EATLARLEQA BACU012014/1-247 SDGHVPCSAV PELLRVTKPG GLLCLTTRTN PSNLRYKEAL EATLARLEQA 201 250 ENSTTRP00000012033/1-241 RAWERLVALW TSGN------ WPPPSSRWGL APLTATASSP AS-------- ENSP00000297873/1-245 GMWEGLVA-W PVDRLWTAGS WLPPSWRWYP ASLPRMASSP AL-------- ENSBTAP00000026552/1-256 GAWERLVA-R PVDQ------ WELATSELEV RPGTSDSDGF ISGIIYLYRK bmy_00377T0/1-248 RAWERLVA-W PVDQ------ WELATSELEL GPGASDSDGF ISGIVYLYRK BACU012014/1-247 RAWERLVA-W PVDQ------ WELATSELEL GPGASDSDGF ISGIVYLYRK 251 300 ENSTTRP00000012033/1-241 -STCTESRRQ PRLRE ENSP00000297873/1-245 -STCTESGRR PRLRK ENSBTAP00000026552/1-256 QAAAQAEGGR PGA-- bmy_00377T0/1-248 QEAAQAEGVR PSV-- BACU012014/1-247 QEAAQAEGVR PGA--