KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:24 2014 Check: 00 .. Name: ENSP00000261023/1-1048 Len: 1159 Check: 811 Weight: 1.00 Name: ENSBTAP00000026553/1-1048 Len: 1159 Check: 505 Weight: 1.00 Name: bmy_08718T0/1-987 Len: 1159 Check: 1716 Weight: 1.00 Name: BACU019948/1-990 Len: 1159 Check: 2977 Weight: 1.00 Name: ENSTTRP00000011836/1-1095 Len: 1159 Check: 4646 Weight: 1.00 // 1 50 ENSP00000261023/1-1048 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026553/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_08718T0/1-987 ---------- ---------- ---------- ---------- ---------- BACU019948/1-990 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011836/1-1095 ERPSEREARG RPRCYPRPAR PAPHFPGGRS GAQPSCFPRR CPGLAGKRAA 51 100 ENSP00000261023/1-1048 ---------- ---------- ---------- ---MAFPPRR RLRLGPRGLP ENSBTAP00000026553/1-1048 ---------- ---------- ---------- ---MASLPRR RLRLRPRRLL bmy_08718T0/1-987 ---------- ---------- ---------- ---------- ---------- BACU019948/1-990 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011836/1-1095 GKFRRAQAAG RGHRALRAGW PRLRARRPAR TSAMASLPRR RLRLRPRRLL 101 150 ENSP00000261023/1-1048 LLLSGLLLPL CRAFNLDVDS PAEYSGPEGS YFGFAVDFFV PSASSRMFLL ENSBTAP00000026553/1-1048 LLLPGILLPL CGAFNLDVES PAEYSGPEGS YFGFAVDFFV PSASSRMFLL bmy_08718T0/1-987 ---------- ---------- ---------- ---------- ------MFLL BACU019948/1-990 -----XLLPL CGAFNLDVDS PAEYSGPEGS YFGFAVDFFV PSASSRMFLL ENSTTRP00000011836/1-1095 LLLPGFLLPL CGAFNLDVDS PAEYSGPEGS YFGFAVDFFV PSTSSRMFLL 151 200 ENSP00000261023/1-1048 VGAPKANTTQ PGIVEGGQVL KCDWSSTRRC QPIEFDA--- ---------- ENSBTAP00000026553/1-1048 VGAPKANTTQ PGIVEGGQVL KCDWSSHRRC QPIEFDA--- ---------- bmy_08718T0/1-987 VGAPKANTTQ PGIVEGGQVL KCDWSSHRGC QPIEFDATVL KYIHSGNYNT BACU019948/1-990 VGAPKANTTQ PGIVEGGQVL KCDWSSHRGC QPIEFDA--- ---------- ENSTTRP00000011836/1-1095 VGAPKANTTQ PGIVEGGQVL KCDWSSHRGC QPIEFDA--- ---------- 201 250 ENSP00000261023/1-1048 ---------- -----TGNRD YAKDDPLEFK SHQWFGASVR SKQDKILACA ENSBTAP00000026553/1-1048 ---------- -----TGNRD YAKDDPLEFK SHQWFGASVR SKQDKILACA bmy_08718T0/1-987 SEAEIMMWTV TFDIMTSNRD YAKDDPLEFK SHQWFGASVR SKQDKILACA BACU019948/1-990 ---------- -----TGNRD YAKDDPLEFK SHQWFGASVR SKQDKILACA ENSTTRP00000011836/1-1095 ---------- -----TGNRD YAKDDPLEFK SHQWFGASVR SKQDKILACA 251 300 ENSP00000261023/1-1048 PLYHWRTEMK QEREPVGTCF LQDGTKTVEY APCRSQDIDA DGQGFCQGGF ENSBTAP00000026553/1-1048 PLYHWRTEMK QEREPVGTCF LQDGTKTVEY APCRSKNIDA DGQGFCQGGF bmy_08718T0/1-987 PLYHWRTEMK QEREPVGTCF LQDGTKTVEY APCRSKNIDA DGQGFCQGGF BACU019948/1-990 PLYHWRTEMK QEREPVGTCF LQDGTKTVEY APCRS----- ---------- ENSTTRP00000011836/1-1095 PLYHWRTEMK QEREPVGTCF LQDGTKTVEY APCRS----- ---------- 301 350 ENSP00000261023/1-1048 SIDFTKADRV LLGGPGSFYW QGQLISDQVA EIVSKYDPNV YSIKYNNQLA ENSBTAP00000026553/1-1048 SIDFTKADRV LLGGPGSFYW QGQLISDQVA EIVSKYDPKV YSIKYNNQLA bmy_08718T0/1-987 SIDFTKADRV LLGGPGSFYW QGQLISDQVA EIVSKYDPKV YSIKYNNQLA BACU019948/1-990 ---------- ---------- -SQLISDQVA EIVSKYDPKV YSIQYNNQLA ENSTTRP00000011836/1-1095 ---------- ---------- -SQLISDQIA EIVSKYDPKV YSIKYNNQLA 351 400 ENSP00000261023/1-1048 TRTAQAIFDD SYLGYSVAVG DFNGDGIDDF VSGVPRAART LGMVYIYDGK ENSBTAP00000026553/1-1048 TRTAQAIFDD SYLGYSVAVG DFNGDGIDDF VSGVPRAART LGMVYIYDGK bmy_08718T0/1-987 TRTAQAIFDD SYLGYSVAVG DFNGDGIDDF VSGVPRAART LGMVYIYDGK BACU019948/1-990 TRTAQAIFDD SYLGYSVAVG DFNGDGIDDF VSGVPRAART LGMVYIYDGK ENSTTRP00000011836/1-1095 TRTAQAIFDD SYLGYSVAVG DFNGDGIDDF VSGVPRAART LGMVYIYDGK 401 450 ENSP00000261023/1-1048 NMSSLYNFTG EQMAAYFGFS VAATDINGDD YADVFIGAPL FMDRGSDGKL ENSBTAP00000026553/1-1048 NMSSLHNFTG EQMAAYFGFS VAATDINGDD YADVFIGAPL FMDRGSDGKL bmy_08718T0/1-987 NMSSLHNFTG EQMAAYFGFS VAATDINGDD YADVFIGAPL FMDRGSDGKL BACU019948/1-990 NMSSLHNFTG EQMAAYFGFS VAATDINGDD YADVFIGAPL FMDRGSDGKL ENSTTRP00000011836/1-1095 NMSSLHNFTG EQMAAYFGFS VAATDINGDD YADVFIGAPL FMDRGSDGKL 451 500 ENSP00000261023/1-1048 QEVGQVSVSL QRASGDFQTT KLNGFEVFAR FGSAIAPLGD LDQDGFNDIA ENSBTAP00000026553/1-1048 QEVGQVSVSL QKASGDFQTI KLNGFEVFAR FGSAIAPLGD LDQDGFNDIA bmy_08718T0/1-987 QEVGQVSVSL QRASGDFQTT KLNGFEVFAR FGSAIAPLGD LDQDGFNDIA BACU019948/1-990 QEVGQVSVSL QRASGDFQTT KLNGFEVFAR FGSAIAPLGD LDQDGFNDIA ENSTTRP00000011836/1-1095 QEVGQVSVSL QRASGDFQTT KLNGFEVFAR FGSAIAPLGD LDQDGFNDIA 501 550 ENSP00000261023/1-1048 IAAPYGGEDK KGIVYIFNGR STGLNAVPSQ ILEGQWAARS MPPSFGYSMK ENSBTAP00000026553/1-1048 IAAPYGGEDK KGIVYIFNGR PTGLNAVPSQ ILEGKWAARS MPPSFGYSMK bmy_08718T0/1-987 IAAPYGGEDK KGIVYIFNGR PTGLNAVPSQ ILEGKWAARS MPPSFGYSMK BACU019948/1-990 IAAPYGGEDK KGIVYIFNGR PTGLNAVPSQ ILEGKWAARS MPPSFGYSMK ENSTTRP00000011836/1-1095 IAAPYGGEDK KGIVYIFNGR PTGLNAVPSQ ILEGKWAARS MPPSFGYSMK 551 600 ENSP00000261023/1-1048 GATDIDKNGY PDLIVGAFGV DRAILYRARP VITVNAGLEV YPSILNQDNK ENSBTAP00000026553/1-1048 GATDIDKNGY PDLIVGAFGV DRAVLYRARP VITVNAGLEV YPSILNQENK bmy_08718T0/1-987 GATDIDKNGY PDLIVGAFGV DRAVLYRARP VITVNAGLEV YPSILNQDNK BACU019948/1-990 GATDIDKNGY PDLIVGAFGV DRAVLYRARP VITVNAGLEV YPSILNQDNK ENSTTRP00000011836/1-1095 GATDIDKNGY PDLIVGAFGV DRAVLYRARP VITVNAGLEV YPSILNQDNK 601 650 ENSP00000261023/1-1048 TCSLPGTALK VSCFNVRFCL KADGKGVLPR KLNFQVELLL DKLKQKGAIR ENSBTAP00000026553/1-1048 TCPLPGTDLK VSCFNVRFCL KADGKGALPT KLDFQVELLL DKLKQKGAIR bmy_08718T0/1-987 TCPLPGTDLK VSCFNVRFCL KANGKGALPT KLNFQVELLL DKLKQKGAIR BACU019948/1-990 TCPLPGTDLK VSCFNVRFCL KADGKGALPT KLNFQVELLL DKLKQKGAIR ENSTTRP00000011836/1-1095 TCPLPGTDLK VSCFNVRFCL KADGKGALPT KLNFQVELLL DKLKQKGAIR 651 700 ENSP00000261023/1-1048 RALFLYSRSP SHSKNMTISR GGLMQCEELI AYLRDESEFR DKLTPITIFM ENSBTAP00000026553/1-1048 RALFLHNRSP GHSKNMTISR GGQMQCEELI AYLRDESEFR DKLTPITIFM bmy_08718T0/1-987 RALFLHNRSP GHSKNMTISR GGQMQCEELI AYLRDESEFR DKLTPITIFM BACU019948/1-990 RALFLHNRSP GHSKNMTISR GGQMQCEELI AYLRDESEFR DKLTPITIFM ENSTTRP00000011836/1-1095 RALFLHNRSP GHSKNMTISR GGQMQCEELI AYLRDESEFR DKLTPITIFM 701 750 ENSP00000261023/1-1048 EYRLDYRTAA DTTGLQPILN QFTPANISRQ AHILLDCGED NVCKPKLEVS ENSBTAP00000026553/1-1048 EYWLDYRTAA DATGLQPILN QFTPANVSRQ AHILLDCGED NVCKPKLEVS bmy_08718T0/1-987 EYRLDYRTAA DATGLQPILN QFTPANISRQ ---------- ---------- BACU019948/1-990 EYRLDYRTAA DATGLQPILN QFTPANISRQ AHILLDCGED NVCKPKLEVS ENSTTRP00000011836/1-1095 EYRLDYRTAA DATGLQPILN QFTPANISRQ AHILLDCGED NVCKPKLEVS 751 800 ENSP00000261023/1-1048 VDSDQKKIYI GDDNPLTLIV KAQNQGEGAY EAELIVSIPL QADFIGVVRN ENSBTAP00000026553/1-1048 VDSDQKKIYI GDDNPLTLIV KAQNQGEGAY EAELIVSIPL QADFIGVVRN bmy_08718T0/1-987 ------KIYI GDDNPLTLIV KAQNQGEGAY EAELIVSIPP QADFIGVVRN BACU019948/1-990 VDSDQKKIYI GDDNPLTLIV KAQNQGEGAY EAELIVSIPP QADFIGVVRN ENSTTRP00000011836/1-1095 VDSDQKKIYI GDDNPLTLIV KAQNQGEGAY EAELIVSIPP QADFIGVVRN 801 850 ENSP00000261023/1-1048 NEALARLSCA FKTENQTRQV VCDLGNPMKA GTQLLAGLRF SVHQQSEMDT ENSBTAP00000026553/1-1048 SEALARLSCA FKTENQTRQV VCDLGNPMKA GTQLLAGLRF SVHQQSEMDT bmy_08718T0/1-987 SEALARLSCA FKTENQTRQV VCDLGNPMKA GTQLLAGLRF SVHQQSEMDT BACU019948/1-990 SEALARLSCA FKTENQTRQV VCDLGNPMKA GTQLLAGLRF SVHQQSEMDT ENSTTRP00000011836/1-1095 SEALARLSCA FKTENQTRQV VCDLGNPMKA GTQLLAGLRF SVHQQSEMDT 851 900 ENSP00000261023/1-1048 SVKFDLQIQS SNLFDKVSPV VSHKVDLAVL AAVEIRGVSS PDHVFLPIPN ENSBTAP00000026553/1-1048 SVKFDLQIQS SNLFDKVSPV VSYKVDLAVL AAVEIRGVSS PDHIFLPIPN bmy_08718T0/1-987 SVKFDLQIQS SNLFDKVSPV VSYKVDLAVL AAVEIRGVSS PDHIFLPIPN BACU019948/1-990 SVKFDLQIQS SNLFDKVSPV VSYKVDLAVL AAVEIRGVSS PDHIFLPIPN ENSTTRP00000011836/1-1095 SVKFDLQIQS SNLFDKVSPV VSYKVDLAVL AAVEIRGVSS PDHIFLPIPN 901 950 ENSP00000261023/1-1048 WEHKENPETE EDVGPVVQHI YELRNNGPSS FSKAMLHLQW PYKYNNNTLL ENSBTAP00000026553/1-1048 WKYKENPETE EDVGPVVQHI YELRNNGPSS FSKAMLHLQW PYKYNNNTLL bmy_08718T0/1-987 WEHKENPETE EDVGPVVQHI YELRNNGPSS FSKAMLNLQW PYKYNNNTLL BACU019948/1-990 WEHKENPETE EDVGPVVQHI YELRNNGPSS FSKAMLNLQW PYKYNNNTLL ENSTTRP00000011836/1-1095 WEHKENPETE EDVGPVVQHI YELRNNGPSS FSKAMLNLQW PYKYNNNTLL 951 1000 ENSP00000261023/1-1048 YILHYDIDGP MNCTSDMEIN PLRIKISSLQ TTEKNDTVAG QGERDHLITK ENSBTAP00000026553/1-1048 YILQYDIDGP MNCTSDMEIN PLRIKISNSQ TSEKNDTVGG QGDRNHLITK bmy_08718T0/1-987 YILQYDIDGP MNCTSDMEIN PLRIKISNSQ TTEKNDTVGG QGDRNHLITK BACU019948/1-990 YILQYDIDGP MNCTSDMEIN PLRIKISNSQ TTEKNDTIGG QGDRNHLITK ENSTTRP00000011836/1-1095 YILQYDIDGP MNCTSDMEIN PLRIKISNSQ TTEKNDTIGG QGDRNHLITK 1001 1050 ENSP00000261023/1-1048 RDLALSEGDI HTLGCGVAQC LKIVCQVGRL DRGKSAILYV KSLLWTETFM ENSBTAP00000026553/1-1048 RDLTLNEGDV HTLGCGIAEC LKIVCQVGRL DRGKSAILYV RSLLWTETFM bmy_08718T0/1-987 RDLTLSEGDV HTLGCGIAEC LKIVCQVGRL DRGKSAILYV KSLLWTETFM BACU019948/1-990 RDLTLSEGDV HTLGCGIAEC LKIVCQVGRL DRGKSAILYV KSLLWTETFM ENSTTRP00000011836/1-1095 RDLTLTEGDV HTLGCGIAEC LKIVCQVGRL DRGKSAILYV KSLLWTETFM 1051 1100 ENSP00000261023/1-1048 NKENQNHSYS LKSSASFNVI EFPYKNLPIE DITNSTLVTT NVTWGIQPAP ENSBTAP00000026553/1-1048 NKENQNHSYS LKSSASFNVI EFPYKNLPIE DIFNSTLVTT NVTWGIQPAP bmy_08718T0/1-987 NKENQNHSYS LKSSASFNVI EFPYKNLPIE DIFNSTLVTT NVTWGIQPAP BACU019948/1-990 NKENQNHSYS LKSSASFNVI EFPYKNLPIE DIFNSTLVTT NVTWGIQPAP ENSTTRP00000011836/1-1095 NKENQNHSYS LKSSASFNVI EFPYKNLLIE DIFNSTLVTT NVTWGIQPAP 1101 1150 ENSP00000261023/1-1048 MPVPVWVIIL AVLAGLLLLA VLVFVMYRMG FFKRVRPPQE EQEREQLQPH ENSBTAP00000026553/1-1048 MPVPVWVIIL AVLAGLLLLA VLVFVMYRMG FFKRVRPPQE EQEREQLQPH bmy_08718T0/1-987 MPVPVWVIIL AVLAGLLLLA VLVFVMYRMG FFKRVRPPQE EQEREQLQPH BACU019948/1-990 MPVPVWVIIL AVLAGLLLLA VLVFVMYRMG FFKRVRPPQE EQEREQLQPH ENSTTRP00000011836/1-1095 MPVPVWVIIL AVLAGLLLLA VLVFVMYRMG FFKRVRPPQE EQEREQLQPH 1151 1200 ENSP00000261023/1-1048 ENGEGNSET ENSBTAP00000026553/1-1048 ENGEGNSET bmy_08718T0/1-987 ENGEGNSET BACU019948/1-990 ENGEGNSET ENSTTRP00000011836/1-1095 ENGEGNSET