KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:25 2014 Check: 00 .. Name: ENSP00000262384/1-896 Len: 923 Check: 3776 Weight: 1.00 Name: ENSBTAP00000026560/1-896 Len: 923 Check: 3989 Weight: 1.00 Name: ENSTTRP00000015271/1-830 Len: 923 Check: 1202 Weight: 1.00 Name: bmy_15449T0/1-921 Len: 923 Check: 677 Weight: 1.00 Name: BACU001887/1-831 Len: 923 Check: 3013 Weight: 1.00 // 1 50 ENSP00000262384/1-896 MAARAVLDEF TAPAEKAELL EQSRGRIEGL FGVSLAVLGA LGAEEPLPAR ENSBTAP00000026560/1-896 ---RAVLDEF TVPADKAALL ERSRGRIQGL FGVRLAVLGA LGSEEPLPAR ENSTTRP00000015271/1-830 ---------- ---------- ---------- ---------- ---------- bmy_15449T0/1-921 MAARAVLDEF TAPAEKAALL ERSRGRIEGL FGVSLAVLGA LGAEEPLPAR BACU001887/1-831 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000262384/1-896 IWLQLCGAQE AVHSAKEYIK GICEPELEER ECYPKDMHCI FVGAESLFLK ENSBTAP00000026560/1-896 IWLQLRGTQE AVHSAKEYIK GICEPELEER ECYPKAMHCI FVGAQSLFLK ENSTTRP00000015271/1-830 ---------- ------EYIK GICEPELEER ECYPKAMHCI FVGAQSLFLK bmy_15449T0/1-921 IWLQLRGAQE AVHSAKEYIK GICEPELEER ECYPKAMHCI FVGAQSLFLK BACU001887/1-831 ---------- ------EYIK GICEPELEER ECYPKAMHCI FVGAQSLFLK 101 150 ENSP00000262384/1-896 SLIQDTCADL CILDIGLLGI RGSAEAVVMA RSHIQQFVKL FENKENLPSS ENSBTAP00000026560/1-896 SLIQDTCADL CILDIGLLGI RGSAEAVVMA RSHIQQFVKL FENNENLPNS ENSTTRP00000015271/1-830 SLIQDTCADL CILDIGLLGI RGSAEAVVMA RSHIQQFVKL FENNENLPNS bmy_15449T0/1-921 SLIQDTCADL CILDIGLLGI RGSAEAVVMA RSHIQQFVKL FENNENLPNS BACU001887/1-831 SLIQDTCADL CILDIGLLGI RGSAEAVVMA RSHIQQFVKL FENNENLPNS 151 200 ENSP00000262384/1-896 QKESEVKREF KQFVEAHADN YTMDLLILPT SLKKELLTLT QGEENLFETG ENSBTAP00000026560/1-896 QKESEVKREF KQFVEARADS YTMDLLILPT SLKKELLALT QGEENLFETG ENSTTRP00000015271/1-830 QKESEVKREF KQFVEARADS YTMDLLILPT SLKKELLALT QGEENLFETG bmy_15449T0/1-921 QKESEVKREF KQFVEARADS YTMDLLILPT SLKKELLALT QGEENLFETG BACU001887/1-831 QKESEVKREF KQFVEARADS YTMDLLILPT SLKKELLALT QGEENLFETG 201 250 ENSP00000262384/1-896 DDEVIEMRDS QQTEFTQNAA TGLNISRDET VLQEEARNKA GTPVSELTKQ ENSBTAP00000026560/1-896 DDDVVEIRDS AQAEFTQNAA TGLTISRDEI VLQEDARNKA GTPVSELTKQ ENSTTRP00000015271/1-830 DDDVIEIRDS KQTEFTQNAA TGLNISRDEI VLQEEARNKA GTPVSELTKQ bmy_15449T0/1-921 DDDVIEIRDS KQTEFTQNAA TGLNISRDEI VLQEEARNKA GTPVSELTKQ BACU001887/1-831 DDDVIEIRDS KQTEFTQNAA TGLNISRDEI VLQEEARNKA GTPVSELTKQ 251 300 ENSP00000262384/1-896 MDTVLSSSPD VLFDPINGLT PDEEALSNER ICQKRRFSDS EERHTKKQFS ENSBTAP00000026560/1-896 MDTVFSSSQD VLFVPINGVT PDEEALSKDR VCHKRRFSDS EERHTKKQFS ENSTTRP00000015271/1-830 MDTVFSSSQD VLFVPINGVT PDEEALSKDR VCHKRRFSDS EERHTKKQFS bmy_15449T0/1-921 MDTVFSSSQD VLFVPINGVT PDEEALSKDR VCHKRRFSDS EERRTKKQFS BACU001887/1-831 MDTVFSSSQD VLFVPINGVT PDEEALSKDR VCHKRRFSDS EERRTKKQFS 301 350 ENSP00000262384/1-896 LENVQEGEIL HDAKTLAGNV IADLSDSSAD SENLSPDIKE TTEEMEYNIL ENSBTAP00000026560/1-896 LENVEEGELL HDGKTLAGSV IIDVSDSSTE AENLSPDVKD TTEEMEYNIL ENSTTRP00000015271/1-830 LENVQEGELL HDGKTLAGSV IIDLSDSSTD AENLSPDVKD TTEEMEYNIL bmy_15449T0/1-921 LENVQEEELL HDGKTLAGSV IIDLSDSSTD AENLSPDVKD TTEEMEYNIL BACU001887/1-831 LENVQEGELL HDGKTLAGSV IIDLSDSSTD AENLSPDVKD TTEEMEYNIL 351 400 ENSP00000262384/1-896 VNFFKTMGYS QEIVEKVIKV YGPSTEPLLL LEEIEKENKR FQEDREFSAG ENSBTAP00000026560/1-896 VNFFKTMGYS QEIVEKVIRE YGPSTEPLLL LEEIEKENKR FQGDRELSPG ENSTTRP00000015271/1-830 VNFFKTMGYS QEIVEKVIRE YGPSTEPLLL LEEIEKENKR FQEDREFPPG bmy_15449T0/1-921 VNFFKTMGYS QEIVEKVIRE YGPSTEPLLL LEEIEKENKR FQEDREFPPG BACU001887/1-831 VNFFKTMGYS QEIVEKVIRE YGPSTEPLLL LEEIEKENKR FQEDREFPPG 401 450 ENSP00000262384/1-896 TVYPETNKTK NKGVYSSTNE LTTDSTPKKT QAHTQQNMVE KFSQLPFKVE ENSBTAP00000026560/1-896 TVYPETSRTK NKGVCSSINE LTADSTPKKT QTHTQQNMVE NFSQLPFRVE ENSTTRP00000015271/1-830 TVYPETKRTK NKGVCSSINE LTADSTPKKT QTHTQQNMVE NFSQLPFKVE bmy_15449T0/1-921 TVYPETNRTK NKGVCSSINE LTADSTPKKT QTHTQQNMVE NFSQLPFKVE BACU001887/1-831 TVYPETNRTK NKGVCSSINE LTADSTPKKT QTHTQQNMVE NFSQLPFKVE 451 500 ENSP00000262384/1-896 AKPCTSNCRI NTFRTVPIEQ KHEVWGSNQN YICNTDPETD GLSPSVASPS ENSBTAP00000026560/1-896 SKPCTSNCKI NTYRTVPVEQ KQEIWSSNQN YICNIDLETD GPVPTVVPSS ENSTTRP00000015271/1-830 SKPCTSNCKI NTFRTVPIEQ KQEIWSSNQS YLCNTDLETD GLLPSLAPSS bmy_15449T0/1-921 SKPCTSNCKI NTFRTVPIEQ KQEIWSSNQN YICNIDLETD GLLPSLAPSS BACU001887/1-831 SKPCTSNCKI NTFRTVPIEQ KQEIWSSNQN YICNIDLETD GLLPSLAPSS 501 550 ENSP00000262384/1-896 PKE-VNFVSR GASSHQPRVP LFPENGLHQQ PEPLLPNNMK SACEKRLGCC ENSBTAP00000026560/1-896 PKEVVSFVSR GASSHQPRIP VFPENGLQQQ AEPLLPNSMK SACENRSRCC ENSTTRP00000015271/1-830 PKEIVNFVSR GASSHQPRIP VFPENGVQQQ AEPLLPNNMK SACENRSRCC bmy_15449T0/1-921 PKEIVNFVSR GASSHQPRIP VFPENGVQQQ AEPLLPNNMK SACENRSRCC BACU001887/1-831 PKEIVNFVSR GASSHQPRIP VFPENGVQQQ AEPLLPNNMK SACENRSRCC 551 600 ENSP00000262384/1-896 SSPHSKPNCS TLSPPMPLPQ LLPSVTDARS AGPSDHIDSS VTGVQRFRDT ENSBTAP00000026560/1-896 SSPQSKPGCP PLSPPMPLSQ LLPSVTDARL AGPSEHIDCS VTGVQRFRDT ENSTTRP00000015271/1-830 ASPQSKPNCP PLSPPMPLPQ LLPSVTDARL AGPSEHIDSS VTGVQRFRDT bmy_15449T0/1-921 TSPQSKPNCP PLSPPVPLPQ LLPSVTDARL AGPSEHIDSS VTGVQRFRDT BACU001887/1-831 TSPQSKPNCP PLSPPVPLPQ LLPSVTDARL AGPSEHIDSS VTGVQRFRDT 601 650 ENSP00000262384/1-896 LKIPYKLELK NEPGRTDLKH IVIDGSNVAI THGLKKFFSC RGIAIAVEYF ENSBTAP00000026560/1-896 LKVPYKLELK NEPGRTDLKH IVIDGSNVAI THGLKKFFSC RGIAIAVEYF ENSTTRP00000015271/1-830 LKVPYKLELK NEPGRTDLKH IVIDGSNVAI THGLKKFFSC RGIAIAVEYF bmy_15449T0/1-921 LKVPYKLELK NEPGRTDLKH IVIDGSNVAI THGLKKFFSC RGIAIAVEYF BACU001887/1-831 LKVPYKLELK NEPGRTDLKH IVIDGSNVAI THGLKKFFSC RGIAIAVEYF 651 700 ENSP00000262384/1-896 WKLGNRNITV FVPQWRTRRD PNV--TEQHF LTQLQELGIL SLTPARMVFG ENSBTAP00000026560/1-896 WKLGNRNITV FVPQWRTRRD PNVTETEQHF LTQLQELGIL SLTPARMVFG ENSTTRP00000015271/1-830 WKLGNRNITV FVPQWRTRRD PNV--TEQHF LTQLQELGIL SLTPARMVFG bmy_15449T0/1-921 WKLGNRNITV FVPQWRTRRD PNV--TEQHF LTQLQELGIL SLTPARMVFG BACU001887/1-831 WKLGNRNITV FVPQWRTRRD PNV--TEQHF LTQLQELGIL SLTPARMVFG 701 750 ENSP00000262384/1-896 ERIASHDD-- ---------- ---------- --RFLLHLAD KTGGIIVTND ENSBTAP00000026560/1-896 ERIASHDD-- ---------- ---------- --RFLLHLAD KTGGIIVTND ENSTTRP00000015271/1-830 ERIASHDD-- ---------- ---------- --RFLLHLAD KTGGIIVTND bmy_15449T0/1-921 ERIASHDDRY ERLVSLLKRV WGGEEPTACS TGRFLLHLAD KTGGIIVTND BACU001887/1-831 ERIASHDD-- ---------- ---------- --RFLLHLAD KTGGIIVTND 751 800 ENSP00000262384/1-896 NFREFVNESV SWREIITKRL LQYTFVGDIF MVPDDPLGRS GPRLEEFLQK ENSBTAP00000026560/1-896 NFREFVTESV SWREIITKRL LQYTFVGDIF MVPDDPLGRS GPRLEEFLRK ENSTTRP00000015271/1-830 NFREFVTESA SWREIITKRL LQYTFVGDIF MVPDDPLGRS GPRLEEFLRK bmy_15449T0/1-921 NFREFVTESA SWREIITKRL LQYTFVGDIF MVPDDPLGRS GPRLEEFLRK BACU001887/1-831 NFREFVTESA SWREIITKRL LQYTFVGDIF MVPDDPLGRS GPRLEEFLRK 801 850 ENSP00000262384/1-896 EVCLRDMQPL LSALPNVGMF DPSFRVPGTQ AASTSHQPPT RIQGAPSSHW ENSBTAP00000026560/1-896 EVFLRDMQPL LNALPNVGMF DPSFRVPGAQ AASTSHQPPT RIQGTPPSHW ENSTTRP00000015271/1-830 EVFLXXXXXX XXXXXXXXXX XXXXXXXXXQ AASTGHQ-PA RIQGTPPSHW bmy_15449T0/1-921 EVFLRDMQPL LSALPNVGMF DPSFRVPGTQ AASTSHQPPA RIQGTPPSHW BACU001887/1-831 EVFLRDMQPL LSALPNMGMF DPSFRVPGTQ AASTGHQPPA RIQGTPPSHW 851 900 ENSP00000262384/1-896 LPQQPHFPLL PALPSLQQNL PMPAQRSSAE TNELREALLK IFPDSEQRLK ENSBTAP00000026560/1-896 LPQQPRFPLL PNLSNIQQNL PMPAQRSPAE TNELREALLK IFPDSEQKLK ENSTTRP00000015271/1-830 LPQQSRFPLL PNLPNIQQNL PMPAQRSSAE TNELREALLK IFPDSEQRLK bmy_15449T0/1-921 LPQQPRFPLL PNLPNIQQNL PMPAQRSSAE TNELREALLK IFPDSEQRLK BACU001887/1-831 LPQQPRFPLL PNLPNIQQNL PMPAQRSSAE TNELREALLK IFPDSEQRLK 901 950 ENSP00000262384/1-896 IDQILVAHPY MKDLNALSAM VLD ENSBTAP00000026560/1-896 IDQILAAHPY MKDLNALSAM VLD ENSTTRP00000015271/1-830 IDQILAAHPY MKDLNALSAM VLD bmy_15449T0/1-921 IDQILAAHPY MKDLNALSAM VLD BACU001887/1-831 IDQILAAHPY MKDLNALSAM VLD