KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:26 2014 Check: 00 .. Name: BACU000182/1-539 Len: 542 Check: 1463 Weight: 1.00 Name: ENSP00000253270/1-337 Len: 542 Check: 7078 Weight: 1.00 Name: ENSBTAP00000026562/1-338 Len: 542 Check: 2306 Weight: 1.00 Name: bmy_19204T0/1-274 Len: 542 Check: 9629 Weight: 1.00 Name: ENSTTRP00000001632/1-284 Len: 542 Check: 1006 Weight: 1.00 // 1 50 BACU000182/1-539 ---MVVDEAM GLEAHPGRIY GIVEKMAEHL GTLVFRKRSE KEEQVEDIGK ENSP00000253270/1-337 MTAGGQAEAE GAGGEPGAA- RLPSRVARLL SALFYGTCSF LIVLVNKALL ENSBTAP00000026562/1-338 MTAGGQAEGA GAGADPASA- RLPSRVAKLL SALFYGTCSF LLVLINKALL bmy_19204T0/1-274 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001632/1-284 ---------- ---------- ---------- ---------- ---------- 51 100 BACU000182/1-539 ECSEKKNCLQ SEVKKKISAI PLTFDFQLEF EKDIATSISE AESKITKDRS ENSP00000253270/1-337 TTYGFPSPIF LGIGQMAATI MILY------ ---------- ---------- ENSBTAP00000026562/1-338 TTYRFPSPIV LGVGQMAVTI MILY------ ---------- ---------- bmy_19204T0/1-274 ---------- -----MAVTI MILY------ ---------- ---------- ENSTTRP00000001632/1-284 ----FPSPIV LGIGQMAVTI MILY------ ---------- ---------- 101 150 BACU000182/1-539 YGIKKTKRYV SFKNMPEPKK SDFEKSNLRP HFVPTKIKIQ EIKSIEPVEE ENSP00000253270/1-337 --VSKLNKII HF-------- PDFDKK---- --IPVKL--- ---------- ENSBTAP00000026562/1-338 --VSKLNKII HF-------- PDFDKK---- --IPTKL--- ---------- bmy_19204T0/1-274 --VSKLNKVI HF-------- PDFDKK---- --IPIKL--- ---------- ENSTTRP00000001632/1-284 --VSKLNKVI HF-------- PDFDKK---- --IPIKL--- ---------- 151 200 BACU000182/1-539 YLKSKSIRSF HYLKDTTEAE HAKPFHELYS QHRQQQCRRT LGSTIFSPVP ENSP00000253270/1-337 ---------- ---------- --FPLPLLY- ---------- VGNHI----- ENSBTAP00000026562/1-338 ---------- ---------- --FPLPLLY- ---------- VGNHI----- bmy_19204T0/1-274 ---------- ---------- --FPLPLLY- ---------- VGNHI----- ENSTTRP00000001632/1-284 ---------- ---------- --FPLPLLY- ---------- IGNHI----- 201 250 BACU000182/1-539 SIQSNAYKNE KDSIYRIKSP PEMNDFSTKE NKSIRNDQLN EYSVRKKSLL ENSP00000253270/1-337 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026562/1-338 ---------- ---------- ---------- ---------- ---------- bmy_19204T0/1-274 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001632/1-284 ---------- ---------- ---------- ---------- ---------- 251 300 BACU000182/1-539 PLCFEDELKK PNAKIIDISP AKTATSYTSL LNTKLTLLTN IPRRIQKRTL ENSP00000253270/1-337 ---------- ---------- --SGLSSTSK L--------- ---------- ENSBTAP00000026562/1-338 ---------- ---------- --SGLASTSK L--------- ---------- bmy_19204T0/1-274 ---------- ---------- --SGLSSTSK L--------- ---------- ENSTTRP00000001632/1-284 ---------- ---------- --SGLSSTSK L--------- ---------- 301 350 BACU000182/1-539 LEQSRKDFPP HYVLDLASLP MFTVLRRFSI LFTMFAEGVL LKKTFSWGIK ENSP00000253270/1-337 ---------- -------SLP MFTVLRKFTI PLTLLLETII LGKQYSLNII ENSBTAP00000026562/1-338 ---------- -------SLP MFTVLRKFTI PLTLLLETII LGKQYSLNII bmy_19204T0/1-274 ---------- -------SLP MFTVLRKFTI PLTLLLETII LGKQYSLNII ENSTTRP00000001632/1-284 ---------- -------SLP MFTVLRKFTI PLTLLLETII LGKQYSLNII 351 400 BACU000182/1-539 MTVFAMIIGA FVAASSDLAF DLEGYVFILI NDVLTAANGA YVKQKLDSKE ENSP00000253270/1-337 LSVFAIILGA FIAAGSDLAF NLEGYIFVFL NDIFTAANGV YTKQKMDPKE ENSBTAP00000026562/1-338 VSVFAIILGA FVAAGSDLAF NLEGYIFVFL NDIFTAANGV YTKQKMDPKE bmy_19204T0/1-274 VSVFAIILGA FIAAGSDLAF NLEGYIFVFL NDIFTAANGV YTKQKMDPKE ENSTTRP00000001632/1-284 VSVFAIILGA FIAAGSDLAF NLE-YIFVFL NDIFTAANGV YTKQKMDPKE 401 450 BACU000182/1-539 LGKYGLLYYN ALFMILPTLA IAYFTGDAQK AMDFEGWADT LFLLQFTLSC ENSP00000253270/1-337 LGKYGVLFYN ACFMIIPTLI ISVSTGDLQQ ATEFNQWKNV VFILQFLLSC ENSBTAP00000026562/1-338 LGKYGVLFYN ACFMIIPTLI ISVSTGDLRQ ATEFNQWKNV LFIIQFLLSC bmy_19204T0/1-274 LGKYGVLFYN ACFMIIPTLI ISVSTGDLRQ ATEFNQWKNV LFITQFLLSC ENSTTRP00000001632/1-284 LGKYGVLFYN ACFMIIPTLI ISVSTGDLRQ ATEFNQWKNV LFIIQFLLSC 451 500 BACU000182/1-539 VMGFILMYAT VLCTQYNSAL TTTIVGCIKN ILITYIGMVF GGDYIFTWTN ENSP00000253270/1-337 FLGFLLMYST VLCSYYNSAL TTAVVGAIKN VSVAYIGILI GGDYIFSLLN ENSBTAP00000026562/1-338 FLGFLLMYST VLCSYYNSAL TTAVVGAIKN VSVAYIGMLV GGDYIFSVLN bmy_19204T0/1-274 FLGFLMMYST LLCSYYNSAL TTAVVGAIKN VSIAYIGMLV GGDYIFSVLN ENSTTRP00000001632/1-284 FLGFLLMYST LLCSYYNSAL TTAVVGAIKN VSVAYIGMLV GGDYIFSVLN 501 550 BACU000182/1-539 FIGLNISIAG SLVYSYITFS EEQLSKQSEA SNKLDIKGKG AV ENSP00000253270/1-337 FVGLNICMAG GLRYSFLTLS SQLKPK-PVG EENICLDLKS -- ENSBTAP00000026562/1-338 FVGLNICMAG GLRYSFLTLG SQLKPKQPVD EENISQDLKV -- bmy_19204T0/1-274 FVGLNICMAG GLRYSFLTLN SQLKPKQPVD EENIPQDLKG -- ENSTTRP00000001632/1-284 FVGLNICMAG GLRYSFLTLN SQLKPKQPVD EENIPQDLKG --