KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:27 2014 Check: 00 .. Name: ENSTTRP00000015745/1-1270 Len: 1660 Check: 8190 Weight: 1.00 Name: bmy_17285T0/1-830 Len: 1660 Check: 1486 Weight: 1.00 Name: BACU001814/1-1606 Len: 1660 Check: 3555 Weight: 1.00 Name: ENSP00000405963/1-1273 Len: 1660 Check: 8536 Weight: 1.00 Name: ENSBTAP00000026564/1-1257 Len: 1660 Check: 1960 Weight: 1.00 // 1 50 ENSTTRP00000015745/1-1270 MQKGIRLNDG HVASLGLLAR KDGTRKGYLS KRSSDNTKWQ TKWFALLQNL bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 MQKGIRLNDG HVASLGLLAR KDGTRKGYLS KRSSDNTKWQ TKWFALLQNL ENSP00000405963/1-1273 MQKGIRLNDG HVASLGLLAR KDGTRKGYLS KRSSDNTKWQ TKWFALLQNL ENSBTAP00000026564/1-1257 MQKGIRLNDG HVASLGLLAR KDGTRKGYLS KRSSDNTKWQ TKWFALLQNL 51 100 ENSTTRP00000015745/1-1270 LFYFESDSSS RPSGLYLLEG CVCDRAPSPK PTLSAKEPLE KQ-------- bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 LFYFESDSSS RPSGLYLLEG CVCDRAPSPK PTLSAKEPLE KQRGPARTHM ENSP00000405963/1-1273 LFYFESDSSS RPSGLYLLEG CVCDRAPSPK PALSAKEPLE KQ-------- ENSBTAP00000026564/1-1257 LFYFESDSSS RPSGLYLLEG CVCDRAPSPK PTLSAKEPLE KQ-------- 101 150 ENSTTRP00000015745/1-1270 ---------- ---------- -------HYF TVNFSHENQK ALELRTEDAR bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 NPYGHIVLAN VAKLLSHGRA EAHVLFSHYF TVNFSHENQK ALELRTEDAR ENSP00000405963/1-1273 ---------- ---------- -------HYF TVNFSHENQK ALELRTEDAK ENSBTAP00000026564/1-1257 ---------- ---------- -------HYF TVNFSHENQK ALELRTEDAK 151 200 ENSTTRP00000015745/1-1270 DCDEWVAAIA HASYRTLATE HEALMQKYLH LLQIVETEKT VAKQLRQQIE bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 DCDEWVAAIA HASYRTLATE HEALMQKYLH LLQIVETEKT VAKQLRQQIE ENSP00000405963/1-1273 DCDEWVAAIA HASYRTLATE HEALMQKYLH LLQIVETEKT VAKQLRQQIE ENSBTAP00000026564/1-1257 DCDEWVAAIA HASYRTLATE HEALMQKYLH LLQIVETEKT VAKQLRQQIE 201 250 ENSTTRP00000015745/1-1270 DGEIEIERLK AEIASLLKDN ERIQSTQTVT PNDEDSDIKK IKKVQSFLRG bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 DGEIEIERLK AEIASLLKDN ERIQSTQTVT PNDEDSDIKK IKKVQSFLRG ENSP00000405963/1-1273 DGEIEIERLK AEITSLLKDN ERIQSTQTVA PNDEDSDIKK IKKVQSFLRG ENSBTAP00000026564/1-1257 DGEVEIERLK AEIASLLKDN ERIQSTQTVT PNDEDSDIKK IKKVQSFLRG 251 300 ENSTTRP00000015745/1-1270 WLCRRKWKTI IQDYIRSPHA DSMRKRNQVV FSMLEAEAEY VQQLHILVNN bmy_17285T0/1-830 ---------- ---------- ----MKGQAV SCLLPGRA-- ---------- BACU001814/1-1606 WLCRRKWKTI IQDYIRSPHA DSMRKRNQVV FSMLEAEAEY VQQLHILVNN ENSP00000405963/1-1273 WLCRRKWKTI IQDYIRSPHA DSMRKRNQVV FSMLEAEAEY VQQLHILVNN ENSBTAP00000026564/1-1257 WLCRRKWKTI IQDYIRSPHA DSMRKRNQVV FSMLEAEAEY VQQLHILVNN 301 350 ENSTTRP00000015745/1-1270 FLRPLRMAAS SKKPPITHDD VSSIFLNSET IMFLHQIFYQ GLKARISSWP bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 FLRPLRMAAS SKKPPITHDD VSSIFLNSET IMFLHQIFYQ GLKARISSWP ENSP00000405963/1-1273 FLRPLRMAAS SKKPPITHDD VSSIFLNSET IMFLHQIFYQ GLKARISSWP ENSBTAP00000026564/1-1257 FLRPLRMAAS SKKPPITHDD VSSIFLNSET IMFLHQIFYQ GLKARISSWP 351 400 ENSTTRP00000015745/1-1270 TLVLADLFDI LLPMLNIYQE FVRNHQYSLQ ILAHCKQNRD FDKLLKHYEA bmy_17285T0/1-830 ---------- ---------- ---------- --------RA YRRKLK---- BACU001814/1-1606 TLVLADLFDI LLPMLNIYQE FVRNHQYSLQ ILAHCKQNRD FDKLLKHYEA ENSP00000405963/1-1273 TLVLADLFDI LLPMLNIYQE FVRNHQYSLQ ILAHCKQNRD FDKLLKHYEA ENSBTAP00000026564/1-1257 TLVLADLFDI LLPMLNIYQE FVRNHQYSLQ ILAHCKQNRD FDKLLKHYEA 401 450 ENSTTRP00000015745/1-1270 KPDCEERTLE TFLTYPMFQI PRYILTLHEL LAHTPHEHVE RNSLDYAKSK bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 KPDCEERTLE TFLPNPM--- --YILTLHEL LAHTPHEHVE RNSLDYAKSK ENSP00000405963/1-1273 KPDCEERTLE TFLTYPMFQI PRYILTLHEL LAHTPHEHVE RNSLDYAKSK ENSBTAP00000026564/1-1257 KPDCEERTLE TFLTYPMFQI PRYILTLHEL LAHTPHEHVE RNSLDYAKSK 451 500 ENSTTRP00000015745/1-1270 LEELSRIMHD EVSETENIRK NLAIERMIIE GCEILLDTSQ TFVRQGSLIQ bmy_17285T0/1-830 ------IMHD EVSETENIRK NLAIERMIIE GCEILLDTSQ TFVRQGSLIQ BACU001814/1-1606 LEELSRIMHD EVSETENIRK NLAIERMIIE GCEILLDTSQ TFVRQGSLIQ ENSP00000405963/1-1273 LEELSRIMHD EVSETENIRK NLAIERMIIE GCEILLDTSQ TFVRQGSLIQ ENSBTAP00000026564/1-1257 LEELSRIMHD EVSETENIRK NLAIERMIIE GCEILLDTSQ TFVRQGSLIQ 501 550 ENSTTRP00000015745/1-1270 VPMSEKGKIT RGRLGSLSLK KEGERQCFLF SKHLIICTRG SGGKLHLTK- bmy_17285T0/1-830 VPMSEKGKIT RGRLGSLSLK KEGERQCFLF SKHLIICTRG SGGKLHLTKV BACU001814/1-1606 VPMSEKGKIT RGRLGSLSLK KEGERQCFLF SKHLIICTRG SGGKLHLTK- ENSP00000405963/1-1273 VPMSEKGKIT RGRLGSLSLK KEGERQCFLF SKHLIICTRG SGGKLHLTK- ENSBTAP00000026564/1-1257 VPMSEKGKIT RGRLGSLSLK KEGERQCFLF SKHLIICTRG SGGKLHLTK- 551 600 ENSTTRP00000015745/1-1270 ---------- ---------- ---------N GVISLIDCTL LEEPESTEEE bmy_17285T0/1-830 GTVGAKLLGL EVRHRPDPGV PTDPDHGPGN GVISLIDCTL LEEPESTEEE BACU001814/1-1606 ---------- ---------- ---------N GVISLIDCTL LEEPESTEEE ENSP00000405963/1-1273 ---------- ---------- ---------N GVISLIDCTL LEEPESTEEE ENSBTAP00000026564/1-1257 ---------- ---------- ---------N GVISLIDCTL LEEPESTEEE 601 650 ENSTTRP00000015745/1-1270 AKGSGQDIDH LDFKIGVEPK DSPPFTVILV ASSRQEKAAW TSDISQCVDN bmy_17285T0/1-830 AKGSGQDTDH LDFKIGVEPK DSPPFTVILV ASSRQEKAAW TSDISQCVDN BACU001814/1-1606 AKGSGQDIDH LDFKIGVEPK DSPPFTVILV ASSRQEKAAW TSDISQCVDN ENSP00000405963/1-1273 AKGSGQDIDH LDFKIGVEPK DSPPFTVILV ASSRQEKAAW TSDISQCVDN ENSBTAP00000026564/1-1257 AKGSGQDVDH LDFKIGVEPK DSPPFTVILV ASSRQEKAAW TSDISQCVDN 651 700 ENSTTRP00000015745/1-1270 IRCNGLMMNA FEENSKVTVP QMIKPMAASH CRRQGAKMIR SDASLYCDDV bmy_17285T0/1-830 IRCNGLMMNA FEENSKVTVP QMIN------ ---------- ---------- BACU001814/1-1606 IRCNGLMMNA FEENSKVTVP QMIK------ ---------- SDASLYCDDV ENSP00000405963/1-1273 IRCNGLMMNA FEENSKVTVP QMIK---RTR EGTREAEMSR SDASLYCDDV ENSBTAP00000026564/1-1257 IRCNGLMMNA FEENSKVTVP QMIK------ ---------- SDASLYCDDV 701 750 ENSTTRP00000015745/1-1270 DIRFSKTMNS CKVLQIRYAS VERLLERLTD LRFLSIDFLN TFLHSYRVFT bmy_17285T0/1-830 -----KTMNS CKVLQIRYAS VERLLERLTD LRFLSIDFLN TFLHSYRVFT BACU001814/1-1606 DIRFSKTMNS CKVLQIRYAS VERLLERLTD LRFLSIDFLN TFLHSYRVFT ENSP00000405963/1-1273 DIRFSKTMNS CKVLQIRYAS VERLLERLTD LRFLSIDFLN TFLHSYRVFT ENSBTAP00000026564/1-1257 DIRFSKTMNS CKVLQIRYAS VERLLERLTD LRFLSIDFLN TFLHSYRVFT 751 800 ENSTTRP00000015745/1-1270 TAVVVLDKLI TIYRKPISAI PARWAGSLEL LFASGQNNKL LYGDPPKSPR bmy_17285T0/1-830 TAVVVLDKLI TIYRKPISAI PA---RSLEL LFASGQNNKL LYGDPPKSPR BACU001814/1-1606 TAVVVLDKLI TIYRKPISAI PA---RSLEL LFASGQNNKL LYGDPPKSPR ENSP00000405963/1-1273 TAIVVLDKLI TIYKKPISAI PARWLRSLEL LFASGQNNKL LYGEPPKSPR ENSBTAP00000026564/1-1257 TAVVVLDKLI TIYRKPISAI PA---RSLEL LFASGQNNKL LYGDPPKSPR 801 850 ENSTTRP00000015745/1-1270 ATRKFSSPPP LSITKTSSPS RRRKLSLNIP IITGGKALDL AALSCNSNGY bmy_17285T0/1-830 ATRKFSSPPP LSITKTSSPS RRRKLSLNIP IITGGKALDL AALSCNSNGY BACU001814/1-1606 ATRKFSSPPP LSITKTSSPS RRRKLSLNIP IITGGKALDL AALSCNSNGY ENSP00000405963/1-1273 ATRKFSSPPP LSITKTSSPS RRRKLSLNIP IITGGKALDL AALSCNSNGY ENSBTAP00000026564/1-1257 ATRKFSSPPP LSITKTSSPS RRRKLSLNIP IITGGKALDL AALSCSSNGY 851 900 ENSTTRP00000015745/1-1270 TSMYSAMSPF SKATLDTSKL YVSSSFASKI PDEGDMSAEK PEESSAPSKQ bmy_17285T0/1-830 TSMYSAMSPF SKATLDTSKL YVSSSFASKI PDEGDMSAEK PEELSAPSKQ BACU001814/1-1606 TSMYSAMSPF SKATLDTSKL YVSSSFASKI PDEGDMSAEK PEEFSAPSKQ ENSP00000405963/1-1273 TSMYSAMSPF SKATLDTSKL YVSSSFTNKI PDEGDTTPEK PEDPSALSKQ ENSBTAP00000026564/1-1257 TSMYSAMSPF GKATLDTSKL YVSSSFANKI PDEGDTATEK SEEPSALSKQ 901 950 ENSTTRP00000015745/1-1270 SSEVSMREES DNDQNQSDEG DTETSPTKSP TTPKSVKSKN SSXXXXXXXX bmy_17285T0/1-830 SSEVCMREES DNDQNQSDEG DTETSPTKSP TTPKSVKSKN SSEFPLFSYN BACU001814/1-1606 SSEVCMREES DNDQNQSDEG DTEASPTKSP TTPKSVKSKN SSEFPLFSYN ENSP00000405963/1-1273 SSEVSMREES DIDQNQSDDG DTETSPTKSP TTPKSVKNKN SSEFPLFSYN ENSBTAP00000026564/1-1257 SSEVSMREES DNDQNQSDDG DTETSPTKSP TTPKSVKSKN SSEFPLFSYN 951 1000 ENSTTRP00000015745/1-1270 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17285T0/1-830 NGVVMTSCRE LDGNRSALSA ASAFAIATAG ANEGTPNKEK YRRMSLASAG BACU001814/1-1606 NGVVMTSCRE LDGNRSALSA ASAFAIATAG ANEGTPNKEK YRRMSLASAG ENSP00000405963/1-1273 NGVVMTSCRE LDNNRSALSA ASAFAIATAG ANEGTPNKEK YRRMSLASAG ENSBTAP00000026564/1-1257 NGVVMTSCRE LDSNRSALSA ASAFAIATAG ANEGTPNKEK YRRMSLASAG 1001 1050 ENSTTRP00000015745/1-1270 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17285T0/1-830 FPPDQRNGDK EFVIRRAATN RVLNVLRHWV SKHSQDFETN DELKCKVISF BACU001814/1-1606 FPPDQRNGDK EFVIRRAATN RVLNVLRHWV SKHSQDFESN DELKCKVISF ENSP00000405963/1-1273 FPPDQRNGDK EFVIRRAATN RVLNVLRHWV SKHSQDFETN DELKCKVIGF ENSBTAP00000026564/1-1257 FPPDQRNGDK EFVIRRAATN RVLNVLRHWV SKHSQDFETN DELKCKVISF 1051 1100 ENSTTRP00000015745/1-1270 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAEGVKAE bmy_17285T0/1-830 LEEVMHDPEL LTQERKAAAN IIRTLTQDDP GDSQITLEEL TQMAEGVKAE BACU001814/1-1606 LEEVMHDPEL LTQERKAAAN IIRTLTQDDP GDSQITLEEL TQMAEGVKAE ENSP00000405963/1-1273 LEEVMHDPEL LTQERKAAAN IIRTLTQEDP GDNQITLEEI TQMAEGVKAE ENSBTAP00000026564/1-1257 LEEVMHDPEL LTQERKAAAN IIRTLTQDDP GDNQITLEEI TQMAEGVKAE 1101 1150 ENSTTRP00000015745/1-1270 PFENHSALEI AEQLTLLDHL VFKKIPYEEF F--GWM-LQK ER--PYIM-T bmy_17285T0/1-830 PFENHSALEI AEQLTLLDHL VFKKIPYEEF FGQGWMKLEK NERTPYIMKT BACU001814/1-1606 PFENHSALEI AEQLTLLDHL VFKKIPYEEF FGQGWMKLEK NERTPYIMKT ENSP00000405963/1-1273 PFENHSALEI AEQLTLLDHL VFKKIPYEEF FGQGWMKLEK NERTPYIMKT ENSBTAP00000026564/1-1257 PFENHSALEI AEQLTLLDHL VFKKIPYEEF FGQGWMKLEK NERTPYIMKT 1151 1200 ENSTTRP00000015745/1-1270 TKHFND---- ---------- ---------- ---------- ---------- bmy_17285T0/1-830 TKHFND---- ---------- ---------- ---------- ---------- BACU001814/1-1606 TKHFNDPQPE GRNLSRQLPR ICPSSNPYNR RDPSTPSLVT ALRAFALGIF ENSP00000405963/1-1273 TKHFND---- ---------- ---------- ---------- ---------- ENSBTAP00000026564/1-1257 TKHFND---- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000015745/1-1270 ---------- ---------- -ISNLIASEI IRNEDINARV SAIEKWVAVA bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 IRLLMNLTIN TRAFDGRKWR HISNLIASEI IRNEDINARV SAIEKWVAVA ENSP00000405963/1-1273 ---------- ---------- -ISNLIASEI IRNEDINARV SAIEKWVAVA ENSBTAP00000026564/1-1257 ---------- ---------- -ISNLIASEI VRNEDINARV STIEKWVAVA 1251 1300 ENSTTRP00000015745/1-1270 DICRCLHNYN AVLEITSSMN RSAIFRLKKT WLKVSKQTKA LIDKLQKLVS bmy_17285T0/1-830 ---------- ----ITSSMN RSAIFRLKKT WLKVSKQTKA LIDKLQRLVS BACU001814/1-1606 DICRCLHNYN AVLEITSSMN RSAIFRLKKT WLKVSKQTKA LIDKLQKLVS ENSP00000405963/1-1273 DICRCLHNYN AVLEITSSMN RSAIFRLKKT WLKVSKQTKA LIDKLQKLVS ENSBTAP00000026564/1-1257 DICRCLHNYN AVLEITSSMN RSAIFRLKKT WLKVSKQTKA LIDKLQKLVS 1301 1350 ENSTTRP00000015745/1-1270 SEGRFKNLRE ALKNCDPPCV PYLGMYLTDL AFIEEGTPNY TEDGLVNFSK bmy_17285T0/1-830 SEGRFKNLRE ALKNCDPPCV PYLGMYLTDL AFIEEGTPNY TEDGLVNFSK BACU001814/1-1606 SEGRFKNLRE ALKNCDPPCV PYLGMYLTDL AFIEEGTPNY TEDGLVNFSK ENSP00000405963/1-1273 SEGRFKNLRE ALKNCDPPCV PYLGMYLTDL AFIEEGTPNY TEDGLVNFSK ENSBTAP00000026564/1-1257 SEGRFKNLRE ALKNCDPPCV PYLGMYLTDL AFIEEGTPNY TEDGLVNFSK 1351 1400 ENSTTRP00000015745/1-1270 MRMXXXXXXX XXXXXXXXXX XXXXXX---- ---------- ---------- bmy_17285T0/1-830 MRMISHIIRE IRQFQQTAYK IEHQAK---- ---------- ---------- BACU001814/1-1606 MRMISHIIRE IRQFQQTAYK IEHQAKHRKT YSSEEYHHRL QAFVSNWRKI ENSP00000405963/1-1273 MRMISHIIRE IRQFQQTAYK IEHQAK---- ---------- ---------- ENSBTAP00000026564/1-1257 MRMISHIIRE IRQFQQTAYK IEHQAK---- ---------- ---------- 1401 1450 ENSTTRP00000015745/1-1270 ---------- ---------- ---------- ---------- ---------- bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 NAHNAGNHTF KMGLNQFSDM SFAELKRKYL WSEPQNCSAT KGNYLRGTGP ENSP00000405963/1-1273 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026564/1-1257 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000015745/1-1270 ---------- ---------- VTQYLLD--- ---------- ---------- bmy_17285T0/1-830 ---------- ---------- VTQYLLD--- ---------- ---------- BACU001814/1-1606 YPPSMDWRKK GNFVSPVKNQ AEQQLVDCAQ NFNNHGCQGG LPSQAFEYIR ENSP00000405963/1-1273 ---------- ---------- VTQYLLD--- ---------- ---------- ENSBTAP00000026564/1-1257 ---------- ---------- VTQYLLD--- ---------- ---------- 1501 1550 ENSTTRP00000015745/1-1270 ---------- ---------- ---------- ---------- ---------- bmy_17285T0/1-830 ---------- ---------- ---------- ---------- ---------- BACU001814/1-1606 YNKGIMGEDT YPYKGQDGDC KFQPSKAIAF VKDVANITMN DEEAMVEAVA ENSP00000405963/1-1273 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026564/1-1257 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000015745/1-1270 ---------- --QSFVMDEE SLYKCSL--- ---------- ---------- bmy_17285T0/1-830 ---------- --QSFVMDEE SLYKCSL--- ---------- ---------- BACU001814/1-1606 LYNPVSFAFE VIDDFLMYKK GVYSSTSCHK TPDKVNHAVL AVGYGEENGI ENSP00000405963/1-1273 ---------- --QSFVMDEE SLYESSL--- ---------- ---------- ENSBTAP00000026564/1-1257 ---------- --QSFVMDEE SLYESSL--- ---------- ---------- 1601 1650 ENSTTRP00000015745/1-1270 ---------- ---------- -RIEPKLPT- ---------- ---------- bmy_17285T0/1-830 ---------- ---------- -RIEPKLPT- ---------- ---------- BACU001814/1-1606 PYWIVKNSWG PQWGMKGYRK DTTEPEVAIH RIRITLTSHS VKSLEKVCAV ENSP00000405963/1-1273 ---------- ---------- -RIEPKLPT- ---------- ---------- ENSBTAP00000026564/1-1257 ---------- ---------- -RIEPKLPT- ---------- ---------- 1651 1700 ENSTTRP00000015745/1-1270 ---------- bmy_17285T0/1-830 ---------- BACU001814/1-1606 LISGAKAKNL ENSP00000405963/1-1273 ---------- ENSBTAP00000026564/1-1257 ----------