KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:31 2014 Check: 00 .. Name: ENSTTRP00000006387/1-570 Len: 670 Check: 7430 Weight: 1.00 Name: BACU010593/1-639 Len: 670 Check: 3706 Weight: 1.00 Name: ENSP00000367851/1-570 Len: 670 Check: 7241 Weight: 1.00 Name: bmy_15628T0/1-563 Len: 670 Check: 675 Weight: 1.00 Name: ENSBTAP00000026580/1-570 Len: 670 Check: 8331 Weight: 1.00 // 1 50 ENSTTRP00000006387/1-570 MGNLFVNEGL SIFVILVWLG MNVFLFVWYY RVYDIPDKFF YTRKLLG--- BACU010593/1-639 MGNLFVNEGL SIFVILVWLG MNVFLFVWYY RVYDIPDKFF YTRKLLGVDA ENSP00000367851/1-570 MGNWAVNEGL SIFVILVWLG LNVFLFVWYY RVYDIPPKFF YTRKLLG--- bmy_15628T0/1-563 MGNLFVNEGL SIFVILVWLG MNVFLFVWYY RVYDIPDKFF YTRKLLG--- ENSBTAP00000026580/1-570 MGNWVVNEGI SIFVILVWLG MNVFLFVWYY RVYDIPDKFF YTRKLLG--- 51 100 ENSTTRP00000006387/1-570 ---------- ---------- ---------- ---------S ALALARAPAA BACU010593/1-639 EKDDFPLHFP PPKYAISLGI TKNNYNAKAL HHMNLVTVES ALALARAPAA ENSP00000367851/1-570 ---------- ---------- ---------- ---------S ALALARAPAA bmy_15628T0/1-563 ---------- ---------- ---------- ---------S ALALARAPAA ENSBTAP00000026580/1-570 ---------- ---------- ---------- ---------S ALALARAPAA 101 150 ENSTTRP00000006387/1-570 CLNFNCMLIL LPVCRNLLSF LRGSSACCST RIRRQLDRNL TFHKMVAWMI BACU010593/1-639 CLNFNCMLIL LPVCRNLLSS LRGSSACCST RIRRQLDRNL TFHKMVAWMI ENSP00000367851/1-570 CLNFNCMLIL LPVCRNLLSF LRGSSACCST RVRRQLDRNL TFHKMVAWMI bmy_15628T0/1-563 CLNFNCMLIL LPVCRNLLSF LRGSSACCST RIRRQLDRNL TFHKMVAWMI ENSBTAP00000026580/1-570 CLNFNCMLIL LPVCRNLLSF LRGSSACCST RIRRQLDRNL TFHKMVAWMI 151 200 ENSTTRP00000006387/1-570 ALHTAIHTIA HLFNVEWCVN ARVNNSDPYS IALSDIGDKP GETYLNFARQ BACU010593/1-639 ALHTAIHTIA HLFNVEWCVN ARVNNSDPYS VALSDIGDKP GETYLNFARQ ENSP00000367851/1-570 ALHSAIHTIA HLFNVEWCVN ARVNNSDPYS VALSELGDRQ NESYLNFARK bmy_15628T0/1-563 ALHTAIHTIA HLFNVEWCVN ARVNNSDPYS IALSDIGDKP GETYLNFARQ ENSBTAP00000026580/1-570 ALHTAIHTIA HLFNVEWCVN ARVNNSDPYS IALSDIGDKP NETYLNFVRQ 201 250 ENSTTRP00000006387/1-570 RIKNPEGGLY VAVTRLAGIT GVVITLCLIL IITSSTKTIR RSYFEVFWYT BACU010593/1-639 RIKNPEGGLY VAVTRLAGIT GVVITLCLIL IITSFTKTIR RSYFEVFWYT ENSP00000367851/1-570 RIKNPEGGLY LAVTLLAGIT GVVITLCLIL IITSSTKTIR RSYFEVFWYT bmy_15628T0/1-563 RIKNPEGGLY VAVTRLAGIT GVVITLCLIL IITSSTKTIR RSYFEVFWYT ENSBTAP00000026580/1-570 RIKNPEGGLY VAVTRLAGIT GVVITLCLIL IITSSTKTIR RSYFEVFWYT 251 300 ENSTTRP00000006387/1-570 HHLFVIFFIG LAIHGAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU010593/1-639 HHLFVIFFIG LAIHGAERIV RGQTAESLLQ HKPRECYQNI SQWGKIEKCP ENSP00000367851/1-570 HHLFVIFFIG LAIHGAERIV RGQTAESLAV HNITVCEQKI SEWGKIKECP bmy_15628T0/1-563 HHLFVIFFIG LAIHGAERIV RGQTADSLSK HKPRECYQNI SQWGKIENCP ENSBTAP00000026580/1-570 HHLFVIFFIG LAIHGAQRIV RGQTAESLLK HQPRNCYQNI SQWGKIENCP 301 350 ENSTTRP00000006387/1-570 XXXXXXXXXX TWKWIVGPMF LYLCERLVRF WRSQQKVVIT KVVTHPFKTI BACU010593/1-639 IPKFSGNPPM ---------- ---------- ---------- -VVTHPFKTI ENSP00000367851/1-570 IPQFAGNPPM TWKWIVGPMF LYLCERLVRF WRSQQKVVIT KVVTHPFKTI bmy_15628T0/1-563 IPEFSGNPPM TWKWIVGPMF LYLCERLVRF WRSQQKVVIT KVVTHPFKTI ENSBTAP00000026580/1-570 IPEFSGNPPM TWKWIVGPMF LYLCERLVRF WRSQQKVVIT KVVTHPFKTI 351 400 ENSTTRP00000006387/1-570 ELQMKKKGFK MEVGQYIFVK CPVVSRLEWH PFTLTSAPEE DFFSIHIRIV BACU010593/1-639 ELQMKKKGFK MEVGQYIFVK CPVVSRLEWH PFTLTSAPEE DFFSIHIRIV ENSP00000367851/1-570 ELQMKKKGFK MEVGQYIFVK CPKVSKLEWH PFTLTSAPEE DFFSIHIRIV bmy_15628T0/1-563 ELQMKKKGFK MEVGQYIFVK CPVVSRLEWH PFTLTSAPEE DFFSIHIRIV ENSBTAP00000026580/1-570 ELQMKKKGFK MEVGQYIFVK CPVVSKLEWH PFTLTSAPEE DFFSIHIRIV 401 450 ENSTTRP00000006387/1-570 GDWTEGLFKA CGCDKQEFQD AWKLPKIAVD GPFGTASEDV FSYEVVMLVG BACU010593/1-639 GDWTEGLFKA CGCDKQEFQD AWKLPKIVVD GPFGTASEDV FSYEVVMLVG ENSP00000367851/1-570 GDWTEGLFNA CGCDKQEFQD AWKLPKIAVD GPFGTASEDV FSYEVVMLVG bmy_15628T0/1-563 GDWTEGLFKA CGCDKQEFQD AWKLPKIAVD GPFGTASEDV FSYEVVMLVG ENSBTAP00000026580/1-570 GDWTEGLFKA CGCDKQEFQD AWKLPKIAVD GPFGTASEDV FSYEVVMLVG 451 500 ENSTTRP00000006387/1-570 AGIGVTPFAS ILKSIWYKYC NKAPNLRLKK IYFYWLCRDT HAFEWXXXXX BACU010593/1-639 AGIGVTPFAS ILKSIWYKYC NKAPNLRLKK IYFYWLCRDT HAFEWFADLL ENSP00000367851/1-570 AGIGVTPFAS ILKSVWYKYC NNATNLKLKK IYFYWLCRDT HAFEWFADLL bmy_15628T0/1-563 AGIGVTPFAS ILKSIWYKYC NKAPNLRLKK ------NKVL GDF-LVTYLL ENSBTAP00000026580/1-570 AGIGVTPFAS ILKSVWYKYC NKAPNLRLKK IYFYWLCRDT HAFEWFADLL 501 550 ENSTTRP00000006387/1-570 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA NHFAVHHDEE KDVITGLKQK BACU010593/1-639 QLLETQMQEK DNAGFLSYNI YLTGWDESQA NHFAVHHDEE KDVITGLKQK ENSP00000367851/1-570 QLLESQMQER NNAGFLSYNI YLTGWDESQA NHFAVHHDEE KDVITGLKQK bmy_15628T0/1-563 QLLETQMQEK DNAGFLSYNI YLTGWDESQA NHFAVHHDEE KDVITGLKQK ENSBTAP00000026580/1-570 QLLETQMQEK NNTDFLSYNI CLTGWDESQA SHFAMHHDEE KDVITGLKQK 551 600 ENSTTRP00000006387/1-570 TLYGRPNWDN EFKTIGSQHP STRIGVFLCG PEALAETL-- ---NKQCISN BACU010593/1-639 TLYGRPNWDN EFNTIGSQHP KRGHTGSCCD PGSTGAACQV WSGEVQCLFS ENSP00000367851/1-570 TLYGRPNWDN EFKTIASQHP NTRIGVFLCG PEALAETL-- ---SKQSISN bmy_15628T0/1-563 TLYGRPNWDN EFSTIGSQHP NTRIGVFLCG PEALAETL-- ---NKQCISN ENSBTAP00000026580/1-570 TLYGRPNWDN EFKTIGSQHP NTRIGVFLCG PEALADTL-- ---NKQCISN 601 650 ENSTTRP00000006387/1-570 SD-------- ---------- -------SGP RGVHFI---- ---------- BACU010593/1-639 SGRCVVLAAE SSLAAGVIPL LVGGVAVGGE RGETQVASVT EQNTCGAKAG ENSP00000367851/1-570 SE-------- ---------- -------SGP RGVHFI---- ---------- bmy_15628T0/1-563 SD-------- ---------- -------SGP RGVHFI---- ---------- ENSBTAP00000026580/1-570 SD-------- ---------- -------SGP RGVHFI---- ---------- 651 700 ENSTTRP00000006387/1-570 ---------- ----FNKENF BACU010593/1-639 DISSASAAAV LAIGFISGEI ENSP00000367851/1-570 ---------- ----FNKENF bmy_15628T0/1-563 ---------- ----FNKENF ENSBTAP00000026580/1-570 ---------- ----FNKENF