KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:29:31 2014 Check: 00 .. Name: bmy_20901T0/1-206 Len: 349 Check: 179 Weight: 1.00 Name: ENSBTAP00000026592/1-339 Len: 349 Check: 8538 Weight: 1.00 Name: ENSP00000364502/1-326 Len: 349 Check: 2615 Weight: 1.00 Name: ENSTTRP00000008533/1-308 Len: 349 Check: 3176 Weight: 1.00 // 1 50 bmy_20901T0/1-206 ---------- --MGPQELRD ------KAQR PELWFEAG-- ---------G ENSBTAP00000026592/1-339 ---RDPPRAQ HLTHRLLLCP PPAEFVRRKK TALWFVGALL AVSASILTVG ENSP00000364502/1-326 ---MQPP--- -VPGPLGLLD PAEGLSRRKK TSLWFVGSLL LVSVLIVTVG ENSTTRP00000008533/1-308 MQPLPPP--- -VPGPLALLD TTEGFARRKK TSLWFVGSLL VVSTSILTVG 51 100 bmy_20901T0/1-206 LGRLG----- TRGRFLTGLS LPCLCF---- ---------- QLVAAIVFVS ENSBTAP00000026592/1-339 LAATTRTENV TVGGYYPGII LGFGSFLGII GINLMENRKQ MLVAAIVFVS ENSP00000364502/1-326 LAATTRTENV TVGGYYPGII LGFGSFLGII GINLVENRRQ MLVAAIVFIS ENSTTRP00000008533/1-308 LAATTRTENV TMGGYYPGII LGFGSFLGII GINLVENRKQ MLVAAIVFVS 101 150 bmy_20901T0/1-206 FGVVAAFCCA IVDGVFAARH IEPRPLAAGR CQFYSSGVGY LHDVYQT--- ENSBTAP00000026592/1-339 FGVVAAFCCA VVDGVFAARH IEPRPLIAGR CQFHSSGAGY LHDVHQTETH ENSP00000364502/1-326 FGVVAAFCCA IVDGVFAAQH IEPRPLTTGR CQFYSSGVGY LYDVYQT--- ENSTTRP00000008533/1-308 FGVVAAFCCA IVDGVFAARH IEPRPLTAGR CQFYSSGVGY LHDVYQT--- 151 200 bmy_20901T0/1-206 ---------- ---EVTCHSL NGRCQLKVKS NTCYCCDLYD CQSAEHPPTY ENSBTAP00000026592/1-339 SSPASTCPVC VAFEVTCHSP NGGCPLKVKS NTCYCCDLYD CQGTQSPPIY ENSP00000364502/1-326 ---------- ---EVTCHSL DGKCQLKVRS NTCYCCDLYA CGSAEPSPAY ENSTTRP00000008533/1-308 ---------- ---EVTCHSL NGRCQLKVKS NTCYCCDLYD CHSTEHPPTY 201 250 bmy_20901T0/1-206 YEFVGVRGCQ DVLHLYRLLW ASAALNVLGL FLGIVTAAVL GAFKDMVSSA ENSBTAP00000026592/1-339 HEFVGVGACR DALQLYWLLW ASAVLNVLGL LLGVITAAVL GAFKDVVPLA ENSP00000364502/1-326 YEFIGVSGCQ DVLHLYRLLW ASAVLNVLGL FLGIITAAVL GAFKDMVPLS ENSTTRP00000008533/1-308 YEFVGVRGCQ DVLHLYRLLW ASAALNVLGL FLGVVTAAVL GAFKDMVPLS 251 300 bmy_20901T0/1-206 RRALG----- ---------- ------RLTD GDMGSWSRQP Y--------- ENSBTAP00000026592/1-339 QLAYGPSMAP RVLYDPAQQI LACSGFRPRP PAIPTCSSYP LPLQLPGAFA ENSP00000364502/1-326 QLAYGPAVPP QTLYNPAQQI LAYAGFRLTP EPVPTCSSYP LPLQPCSRFP ENSTTRP00000008533/1-308 QLAYGPSTAP QALYNPAQQI LASTGFGPVP PAVPTCSSYP LPLQMCSLLP 301 350 bmy_20901T0/1-206 ---------- ---------- ---------- ---------- --------- ENSBTAP00000026592/1-339 ASRGSDLPLP EDSQPQPSSS C-------QH PLSAPTHLLP GEKPPPYTP ENSP00000364502/1-326 VAPSSALASS EDLQPPSPSS SGSGLPGQAP PCYAPTYFPP GEKPPPYAP ENSTTRP00000008533/1-308 PAPA------ ---RPP---- --------AP PIFALTHFLP GEKPPPYAP