KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:32 2014 Check: 00 .. Name: ENSTTRP00000012448/1-841 Len: 941 Check: 9087 Weight: 1.00 Name: ENSP00000335029/1-834 Len: 941 Check: 9816 Weight: 1.00 Name: BACU017383/1-896 Len: 941 Check: 3412 Weight: 1.00 Name: bmy_20569T0/1-657 Len: 941 Check: 9701 Weight: 1.00 Name: ENSBTAP00000026598/1-834 Len: 941 Check: 1548 Weight: 1.00 // 1 50 ENSTTRP00000012448/1-841 MAVEEEGLRV FQSVKIKIGE AKNLPTYPGP NKMRDCYCTV NLDQEEVFRT ENSP00000335029/1-834 MAVEDEGLRV FQSVKIKIGE AKNLPSYPGP SKMRDCYCTV NLDQEEVFRT BACU017383/1-896 ---------- ---------E AKNLPTYPGP NKMRDCYCTV NLDQEEVFRT bmy_20569T0/1-657 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026598/1-834 MAVEEEGLRV FQSVKIKIGE AKNLPTYPGP NKMRDCYCTV NLDQEEVFRT 51 100 ENSTTRP00000012448/1-841 QIVEKSLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-------- ENSP00000335029/1-834 KIVEKSLCPF YGEDFYCEIP RSFRHLSFYI FDRDVFRRDS II-------- BACU017383/1-896 KIVEKSLCPF YGEDFYCEIP RSFRHLSFYI FDRDVFRRDS IIDPGRYSTH bmy_20569T0/1-657 -------SPF YGEDFYCEIP RSFRHLSFYI FDRDVFRRDS II-------- ENSBTAP00000026598/1-834 KVVEKSLCPF YGEDFYCEIP RSFRHLSFYI FDRDVFRRDS II-------- 101 150 ENSTTRP00000012448/1-841 ---------- ---------- -----XKVAI RKEDLQKYHN RDTWFQLQHV ENSP00000335029/1-834 ---------- ---------- -----GKVAI QKEDLQKYHN RDTWFQLQHV BACU017383/1-896 PLPEEVTHRA FSGGKTATPP LSSSEGKVAI RKEDLQKYHN RDTWFQLQHV bmy_20569T0/1-657 ---------- ---------- -----GKVAI RKEDLQKYHN RDTWFQLQHV ENSBTAP00000026598/1-834 ---------- ---------- -----GKVAI QKEDLQKYHN RDTWFQLQHV 151 200 ENSTTRP00000012448/1-841 HADSEVQGKV HLALRLSEVI TDSGVVCHKL ATRXXXXXXX XXXXXXXXXX ENSP00000335029/1-834 DADSEVQGKV HLELRLSEVI TDTGVVCHKL ATR------- IVECQGLPIV BACU017383/1-896 DADSEVQGKV HLELRLSEVI TDSGVVCHKL ATR------- ILECQGLPIV bmy_20569T0/1-657 DADSEVQGKV HLELRLSEVI TDSGVVCHKL ATR------- ILECQGLPIV ENSBTAP00000026598/1-834 DADSEVQGKV HLELRLSEVI TDSGVVCHKL ATR------- ILECQGLPIV 201 250 ENSTTRP00000012448/1-841 XXXXXXXXXX XXXXXXXSEA KKTKVKKKTN NPQFDEVFYF EVTRPCSYNR ENSP00000335029/1-834 NGQCDPYATV TLAGPFRSEA KKTKVKRKTN NPQFDEVFYF EVTRPCSYSK BACU017383/1-896 NGQCDPYATV TLAGPCRQVQ PRLG-GGRGR IPHSGK---- QVTRPCSYNR bmy_20569T0/1-657 NGQCDPYATV TLAGPCRSEA KKTKVKKKTN NPQFDEVFYF EVTRPCSYNR ENSBTAP00000026598/1-834 NGQCDPYATV TLAGPCRSEA KKTKVKKKTN NPQFDEVFYF EVTRPCSYSR 251 300 ENSTTRP00000012448/1-841 KSHFDFEDED VDKLEIRVDL WNASNLKFGD EFLGELRVPL KVLRQSSPHE ENSP00000335029/1-834 KSHFDFEEED VDKLEIRVDL WNASNLKFGD EFLGELRIPL KVLRQSSSYE BACU017383/1-896 KSHFDFEDED VDKLEIRVDL WNASNLKFGD EFLGELRVPL KVLRQSSPHE bmy_20569T0/1-657 KSHFDFEDED VDKLEIRVDL WNASNLKFGD EFLGELRVPL KVLRQSSPHE ENSBTAP00000026598/1-834 KSHFDFEDED VDKLEIRVDL WNASNLKFGD EFLGELRVPL KVLRQSSPHE 301 350 ENSTTRP00000012448/1-841 AWYFLQPRDN GSKSLKPEDL GSLRLNVVYT EDHVFSSDYY SPLRDLLLRS ENSP00000335029/1-834 AWYFLQPRDN GSKSLKPDDL GSLRLNVVYT EDHVFSSDYY SPLRDLLLKS BACU017383/1-896 AWYFLQPRDN GSKSLKPEDL GSLRLNVVYT EDHVFSSDYY SPLRDLLLRS bmy_20569T0/1-657 AWYFLQPRDN GSKSPKPEDL GSLRLNVVYT EDHVFSSDYY SPLRDLLLRS ENSBTAP00000026598/1-834 AWYFLQPRDN GSKSLKPGDL GSLRLNVVYT EDHVFSSDYY SPLRDLLLKS 351 400 ENSTTRP00000012448/1-841 ADAEPVSASA AHILGEVCRE KQEAAVPLVR LFLHYGRVVP FISAIASAEV ENSP00000335029/1-834 ADVEPVSASA AHILGEVCRE KQEAAVPLVR LFLHYGRVVP FISAIASAEV BACU017383/1-896 ADVEPVSASA AHILGEVCRE KQEAAVPLVR LFLHYGRVVP FISAIASAEV bmy_20569T0/1-657 ADVEPVSASA AHILGEVCRE KQEAAVPLVR LFLHYGRVVP FISAIASAEV ENSBTAP00000026598/1-834 ADVEPVSASA AHILGEVCRE KQEAAIPLVR LFLHYGRVVP FISAIASAEV 401 450 ENSTTRP00000012448/1-841 QRTQDPNTIF RGNSLTSKCI DETMKLAGMH YLHVTLKPTI EEICQSHKSC ENSP00000335029/1-834 KRTQDPNTIF RGNSLASKCI DETMKLAGMH YLHVTLKPAI EEICQSHKPC BACU017383/1-896 RRTQDPNTIF RGNSLTSKCI DETMKLAGMH YLHVTLKPTI EEICQSHKSC bmy_20569T0/1-657 RRTQDPNTIF RGNSLTSKCI DETMKLAGMH YLHVTLKPTI EEICQSHKSC ENSBTAP00000026598/1-834 RRTQDPNTIF RGNSLTSKCI DETMKLAGMQ YLHVTLKPTI EEICQSHKSC 451 500 ENSTTRP00000012448/1-841 EIDPVRLKDG ESLESNTENL RQYVDRVFSV ITTSGLSCPT VMCDIFFSLR ENSP00000335029/1-834 EIDPVKLKDG ENLENNMENL RQYVDRVFHA ITESGVSCPT VMCDIFFSLR BACU017383/1-896 EIDPVRLKDG ESLESNTENL RQYVDRVFSV ITKSGVSCPT VMCDIFFSLR bmy_20569T0/1-657 EIDPVRLKDG ESLESNTENL RQYVDRVFSV ITKSGVSCPT VMCDIFFSLR ENSBTAP00000026598/1-834 EIDPVRLKDG ESLESNMENL RQFVDRVFSV ITKSGVSCPT VMCDIFFSLR 501 550 ENSTTRP00000012448/1-841 EAAAKRFQDD LDVRYTAVSS FIFLRFFAPA ILSPNLFQLT PHHTDPQTSR ENSP00000335029/1-834 EAAAKRFQDD PDVRYTAVSS FIFLRFFAPA ILSPNLFQLT PHHTDPQTSR BACU017383/1-896 EAAAKRFQDD LDVRYTAVSS FIFLRFFAPA ILSPNLFQLT PHHTDPQTSR bmy_20569T0/1-657 EAAAKRFQDD LDVRYTAVSS FVFLRFFAPA ILSPNLFQLT PHHTDPQTSR ENSBTAP00000026598/1-834 EAAAKRFQDD LDVRYTAVSS FIFLRFFAPA ILSPNLFQLT PHHTDPQTSR 551 600 ENSTTRP00000012448/1-841 TLTLVSKTIQ TLGSLSKSKS ASFKESYMAA FYEFFNEQKY ADAVKNFLDL ENSP00000335029/1-834 TLTLISKTVQ TLGSLSKSKS ASFKESYMAT FYEFFNEQKY ADAVKNFLDL BACU017383/1-896 TLTLVSKTIQ TLGSLSKSKS ASFKESYMAA FYEFFNEQKY ADAVKNFLDL bmy_20569T0/1-657 TLTLVSKTIQ TLGSLSKSKS ASFKESYMAA FYEFFNEQKY AGAVRNFLDL ENSBTAP00000026598/1-834 TLTLVSKTIQ TLGSLSKSKS ASFKESYMAA FYEFFNEQKY ADAVKNFLDL 601 650 ENSTTRP00000012448/1-841 ISSSGRRDPK SVQQPILLKE GFMIKRAQGR KRFGMKNFKK RWFRLTNHEF ENSP00000335029/1-834 ISSSGRRDPK SVEQPIVLKE GFMIKRAQGR KRFGMKNFKK RWFRLTNHEF BACU017383/1-896 ISSSGRRDPK SVQQPILLKE GFMIKRAQGR KRFGMKNFKK RWFRLTNHEF bmy_20569T0/1-657 ISSSGRRDPK SVQQPILLKE GFMIKRAQGR KRFGMKNFKK RWFRLTNHEF ENSBTAP00000026598/1-834 ISSSGRRDPK SVQQPILLKE GFMIKRAQGR KRFGMKNFKK RWFRLTNHEF 651 700 ENSTTRP00000012448/1-841 TYQKSKGDPP LYSIPIENIL AVEPLEEESF KMKNMFQVIQ PERALYIQAN ENSP00000335029/1-834 TYHKSKGDQP LYSIPIENIL AVEKLEEESF KMKNMFQVIQ PERALYIQAN BACU017383/1-896 TYQKSKGDPP LYGIPIENIL AVEPLEEESF KMKN------ --------AN bmy_20569T0/1-657 TYQKSKGDPP LYSIPIENIL AVEPLEEESF KMKNMFQVIQ PERALYIQAN ENSBTAP00000026598/1-834 TYQKSKGDPP LYSIPIENIL AVEPLEEESF KMKNMFQVIQ PERALYIQAN 701 750 ENSTTRP00000012448/1-841 NCVEAKAWID ILTKVSQCNQ KRLAVYHPSA YLNGHWLCCR ASSDTAAGCS ENSP00000335029/1-834 NCVEAKDWID ILTKVSQCNQ KRLTVYHPSA YLSGHWLCCR APSDSAPGCS BACU017383/1-896 NCVEAKAWID ILTKVSQCNQ KRLAVYHPSA YLNGHWLCCR ASSDTAAGCS bmy_20569T0/1-657 NCVEAKAWID ILTKVSQCNQ KRLAVYHPSA YLNGHWLCCR ASSDTAAGCS ENSBTAP00000026598/1-834 NCVEAKAWID ILTKVSQCNQ KRLAVYHPSA YLNGHWLCCR ASSDTAAGCS 751 800 ENSTTRP00000012448/1-841 PCTSGLPANI QLDIDGDRET ERIYSLFSSY MSKLEKMQEA CGSRSVYDGP ENSP00000335029/1-834 PCTGGLPANI QLDIDGDRET ERIYSLFNLY MSKLEKMQEA CGSKSVYDGP BACU017383/1-896 PCTSGLPANI QLDIDGDRET ERIYSLFSSY MSKLEKMQEA CGSRSVYDGP bmy_20569T0/1-657 PCTR------ ---------- ---------- ---------- ---------- ENSBTAP00000026598/1-834 PCTGGLPANI QLDIDGDRET ERIYSLFSSY MSKLEKMQEA CGSRSVYDGP 801 850 ENSTTRP00000012448/1-841 EREEYSTFVI DDPQETYKTL KQVITGVGAL ELEHAQHRRD KFKRTKYGSQ ENSP00000335029/1-834 EQEEYSTFVI DDPQETYKTL KQVIAGVGAL EQEHAQYKRD KFKKTKYGSQ BACU017383/1-896 EREEYSTFII DDPQETYKTL KQVIAGVAAL EQEHAQYKRD KFKKTKYGSQ bmy_20569T0/1-657 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026598/1-834 EQEEYSTFII DDPQETYKTL KQVVAGVGAL EQEHAQYKRD KFRRTKYGSQ 851 900 ENSTTRP00000012448/1-841 EHPIGDK--- ---------- ---------- ---------- ---------- ENSP00000335029/1-834 EHPIGDK--- ---------- ---------- ---------- ---------- BACU017383/1-896 YGPLTTREVT LMTDGCPPKL RLRESPLVWR GEDAGRHPGP RPPSGVTAVT bmy_20569T0/1-657 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026598/1-834 EHPIGDK--- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000012448/1-841 ---------- ---------S FQSYIRQQSE TPAHSM---- - ENSP00000335029/1-834 ---------- ---------S FQNYIRQQSE TSTHSI---- - BACU017383/1-896 SESFVPARNQ DIRLKAQQTQ HQKRLQSRMK TPGRLALRRL C bmy_20569T0/1-657 ---------- ---------- ---------- ---------- - ENSBTAP00000026598/1-834 ---------- ---------S FQSYIRQQSE TPAHSM---- -