KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:29:33 2014 Check: 00 .. Name: ENSP00000300714/1-525 Len: 644 Check: 8685 Weight: 1.00 Name: ENSTTRP00000016378/1-523 Len: 644 Check: 211 Weight: 1.00 Name: ENSBTAP00000026602/1-598 Len: 644 Check: 9161 Weight: 1.00 Name: bmy_02272T0/1-631 Len: 644 Check: 2023 Weight: 1.00 // 1 50 ENSP00000300714/1-525 MAAAPPLRDR LSFLHRLPIL LKGTSDDDVP CPGYLFEEIA KISHESPGSS ENSTTRP00000016378/1-523 MAATVPLRDR LSFLHRLPIL LKGTSDDDVP CPGYLFEEIA KITHESLGSS ENSBTAP00000026602/1-598 MAAMPPLRDR LSFLHRLPIL LKGTSDDDVP CPGYLFEEIA KISHESLGSS bmy_02272T0/1-631 MAATVPLRDR LSFLHRGQL- ---------- APS-LTERLP EISHESLGSS 51 100 ENSP00000300714/1-525 QCLLEYLLSR LHSSSGHGKL KVLKILLYLC SHGSSFFLLI LKRNSAFIQE ENSTTRP00000016378/1-523 QCLLEYLLSR LQSGSGRVKL KVLKIMLHLC GHGSSSFLLI LKRNPAFIQE ENSBTAP00000026602/1-598 QCLLEYLLNR LHSGSGRVKL KVLKILLHLC GHGSSSFLLI LKRNPAFIQE bmy_02272T0/1-631 QCLLEYLLSR LQSGSGRVKL KVLKIMLHLC GHGSSSFLLI LKRNPAFIQE 101 150 ENSP00000300714/1-525 A--------- ----AAFAGP PDPLHGNSLY QKVRAAAQDL GSTLFSDTVL ENSTTRP00000016378/1-523 A--------- ----AVFTGP PDPLHGNSLY QKVRAAAQDL GAALFSDALS ENSBTAP00000026602/1-598 A--------- ----AVFAGP PDPLHGNSLY QKVRAAAQDL GAALYSDALS bmy_02272T0/1-631 AAAQLSSAPL CLRPAVFTGP PDPLHGNSLY QKVRAAAQDL GAALFSDALS 151 200 ENSP00000300714/1-525 PLAPSQPLGT PPATGMGSQA RPHSTLQGFG YSKEHGRT-- ---------- ENSTTRP00000016378/1-523 PLPPSQPPRA LPPAGMGSQS RPQSSLQGFG YSKERGHT-- ---------- ENSBTAP00000026602/1-598 PPPPSQPPRT LPPAGMGSQS RPQSALQGFG YSKERAHTGS AGEAFLSTIQ bmy_02272T0/1-631 PLPPSQPPRA LPPAGMGSQS RPQSALQGFG YSKERGHTGS AGEALLSTIQ 201 250 ENSP00000300714/1-525 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016378/1-523 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026602/1-598 KAAEVVASAV RPGPESPSCQ RSLPRGDTYQ PAVTPSTSLG THASGSSLPA bmy_02272T0/1-631 KAAEVVASAM RPGPESPSSQ RSLLRDDAYQ PAVTPSASLG APTPGNPLRR 251 300 ENSP00000300714/1-525 ------AVRH QPGQAGGGWD ELDSGPSSQN SSQ-NSDLSR VSDSGSHSGS ENSTTRP00000016378/1-523 ------AMRH QPGQAGGGWE ELDSSPNSQD SSQENDDLGK ASDSGSPSGS ENSBTAP00000026602/1-598 ASPGARAARH QPGQAGGGWD ELDSSPSSQD SSQENDDLGK ASDSGSRSGS bmy_02272T0/1-631 AGPGARAMRH QPGQAGGGWD ELDSSPNSQD SSQENDDLGK ASDSGSPSGS 301 350 ENSP00000300714/1-525 DSHSGASREP GDLAERVEVV ALSDCQQELS LVRTVTRGPR AFLSREEAQH ENSTTRP00000016378/1-523 DSPSGASRAP SDLAERVEAV ILSDCQQELS LVRAVTRGPH CFLSREEVQH ENSBTAP00000026602/1-598 DSPSGASRAP SDLAERVEAV TLSDCQQELS LVRTVTQGQH TFLSREEVQH bmy_02272T0/1-631 DSPSGASRAP SDLAERVEAV TLSDCQQELS LVRAVTRGPH CFLSREEVQH 351 400 ENSP00000300714/1-525 FIKACGLLNC EAVLQLLTCH LRGTSECTQL RALCAIASLG SSDLLPQEHI ENSTTRP00000016378/1-523 FVKECGLLNC EAVLELLVRH LGATSERVQM XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026602/1-598 FVKECGLLNC EAVLELLIRH LAATSERVQM RALGAIASLG CTDLLSQERV bmy_02272T0/1-631 FVKECGLLNC ETVLELLIRH LGATSERVQM RALGAIASLG CTDLLSQERV 401 450 ENSP00000300714/1-525 LLRTRPWLQE LSMGSPGPVT NKATK----- ---------- ---------- ENSTTRP00000016378/1-523 XXXXXXXXXX XXXXXXXXXX XXXXX----- ---------- ---------- ENSBTAP00000026602/1-598 LLLTRPRLQE LSAGSPGPVT NKATK----- ---------- ---------- bmy_02272T0/1-631 LLLARPRLQE LSVGSPGPVT NKATKVTRQL DAGKVSICVT AGGEQERCSW 451 500 ENSP00000300714/1-525 -------ILR HFEASCGQLS PARGTSAEPG PTAALPGPSD LLTDAVPLPG ENSTTRP00000016378/1-523 -------ILR HFEASCRQWP PARRPPAEPG PAVARVGPSD LLTDTLPFTG ENSBTAP00000026602/1-598 -------ILR HFEASCRQWP PSRRSPAEPG PAAAHVGPSD LLTDTLPFTG bmy_02272T0/1-631 GNDTRTAILR HFEASCRQWH PARRPXAEPG PAVARVGPSD LLTDTLPFTE 501 550 ENSP00000300714/1-525 SQVFLQPLSS TPVSSRSPAP SSGMPSSPVP TPPPDASPIP APGDPSEAEA ENSTTRP00000016378/1-523 GQGFLQPLSS ALFSPKGTAP PSGLQPGPVP PTSLEGCPLP ARADAREAKT ENSBTAP00000026602/1-598 GPAFLQPLSS ALFFPKGSAP PSGLQPSRVP PTSPDSCPLP VPGAGRDAET bmy_02272T0/1-631 GQAFLQPLSS ALFSPKGTAP PSGLQPGPVP PTPLDGCPLP AHADAREAET 551 600 ENSP00000300714/1-525 RLAESRR--W RPERIPGGTD SPKRGPSS-- -CAWSRDSLF AGMELVACPR ENSTTRP00000016378/1-523 RLAESR---G LSERGPFGTD TAKRGPSL-- --TRSCDSLF AGMELVACPH ENSBTAP00000026602/1-598 GLAGSTDQGA ASEQGPLYMD TPKGGPEIGL GLSHSCSSLF AGMELVACPR bmy_02272T0/1-631 RLAGSREQGA GSKRGPFGTD TAKGGPELDP GPGDSCDSLF AGMELVACPR 601 650 ENSP00000300714/1-525 LVGAGAAAGE SCPDAPRAPQ TSSQRTAAKE PPGSEPSAFA FLNA ENSTTRP00000016378/1-523 LVGAGTAAEE PLP-ACQAPW TSSQRVAAKE PSGSEPSAFA FLNS ENSBTAP00000026602/1-598 LVGAGTAAEE PLP-AHQAPW TLSQRLAAKE PSGSEPSAFT FLNS bmy_02272T0/1-631 LVGAGTAAEE PLP-ACQAPW TPSQRVAAKE PSGSEPSAFA FLNS