KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:41 2014 Check: 00 .. Name: ENSTTRP00000001149/1-1004 Len: 1083 Check: 9272 Weight: 1.00 Name: BACU004176/1-881 Len: 1083 Check: 4075 Weight: 1.00 Name: bmy_09350T0/1-894 Len: 1083 Check: 3735 Weight: 1.00 Name: ENSP00000264360/1-1040 Len: 1083 Check: 8650 Weight: 1.00 Name: ENSBTAP00000026611/1-1046 Len: 1083 Check: 6411 Weight: 1.00 // 1 50 ENSTTRP00000001149/1-1004 MELAGTRPGA TEHPRFRTPM FWLLLLSLLL LLLPGPAASQ LRYSVPEEQT BACU004176/1-881 ---------- ---------- -MIVLLFFAL LWMVEGVFSQ LHYTVQEEQE bmy_09350T0/1-894 ---------- ---------- -MIVLLFFAL LWMVEGVFSQ LHYTVQEEQE ENSP00000264360/1-1040 ---------- ---------- -MIVLLLFAL LWMVEGVFSQ LHYTVQEEQE ENSBTAP00000026611/1-1046 ---------- ---------- -MIVLLFFAL LWMVEGVFSQ LHYTVQEEQE 51 100 ENSTTRP00000001149/1-1004 PGALVGNVAR ALGLELRRLG PGCLRINHLG APSPR--YLE LDLTSGALFV BACU004176/1-881 HGTFVGNIAE DLGLDITKLS ARGFQT---- APNSRTPYLD LNLETGVLYV bmy_09350T0/1-894 HGTFVGNIAE DLGLDITKLS ARGFQT---- APNSRTPYLD LNLETGVLYV ENSP00000264360/1-1040 HGTFVGNIAE DLGLDITKLS ARGFQT---- VPNSRTPYLD LNLETGVLYV ENSBTAP00000026611/1-1046 HGTFVGNIAE DLGLDITKLS ARGFQT---- APNSRTPYLD LNLETGVLYV 101 150 ENSTTRP00000001149/1-1004 NERIDREALC EQRPRCLLSL EVLAHSPVAV SAVEVEVLDI NDNSPRFPRP BACU004176/1-881 NEKIDREQIC KQSPSCVLHL EVFLENPLEL FRVEIEVLDI NDNPPSFPEP bmy_09350T0/1-894 NEKIDREQIC KQSPSCVLHL EVFLENPLEL FRVEIEVLDI NDNPPSFPEP ENSP00000264360/1-1040 NEKIDREQIC KQSPSCVLHL EVFLENPLEL FQVEIEVLDI NDNPPSFPEP ENSBTAP00000026611/1-1046 NEKIDREQIC KQSPSCVLHL EVFLENPLEL FRVEIEVLDI NDNPPSFPEP 151 200 ENSTTRP00000001149/1-1004 DYQLQVSESV APGARFHIES AQDPDVGTNS VQTYELSPSE HFELDLKPLQ BACU004176/1-881 DLTVEISESA TPGTRFPLES AFDPDVGTNS LRDYEITPNS YFSLDVQTQG bmy_09350T0/1-894 DLTVEISESA TPGTRFPLES AFDPDVGTNS LRDYEITPNS YFSLDVQTQG ENSP00000264360/1-1040 DLTVEISESA TPGTRFPLES AFDPDVGTNS LRDYEITPNS YFSLDVQTQG ENSBTAP00000026611/1-1046 DLTVEISESA TPGTRFPLES AFDPDVGTNS LRDYEITPNS YFSLDVQTQG 201 250 ENSTTRP00000001149/1-1004 ENSKVLELVL RKGLDREQAV LHHLVLTAVD GGS------- ---------- BACU004176/1-881 DGNRFAELVL EKPLDREQQA VHRYVLTAVD GGGGGGGGEG GGGGAGGGLL bmy_09350T0/1-894 DGNRFAELVL EKPLDREQQA VHRYVLTAVD GGGGGGGGEG GGGGAGGGLL ENSP00000264360/1-1040 DGNRFAELVL EKPLDREQQA VHRYVLTAVD GGGGGGVGEG GGGGGGAGLP ENSBTAP00000026611/1-1046 DGNRFAELVL EKPLDREQQA VHRYVLTAVD GGGGGGGEGG GGGGGGGGLL 251 300 ENSTTRP00000001149/1-1004 --PARSGTAQ ISVLVLDTND NSPAFDQSTY RVQLREDAPP GTLVVKLNAS BACU004176/1-881 PQQQRTGTAL LTIRVLDSND NVPAFDQPVY TVSLPENSPP GTLVIQLNAT bmy_09350T0/1-894 PQQQRTGTAL LTIRVLDSND NVPAFDQPVY TVSLPENSPP GTLVIQLNAT ENSP00000264360/1-1040 PQQQRTGTAL LTIRVLDSND NVPAFDQPVY TVSLPENSPP GTLVIQLNAT ENSBTAP00000026611/1-1046 PQQQRTGTAL LTIRVLDSND NVPAFDQPVY TVSLPENSPP GTLVIQLNAT 301 350 ENSTTRP00000001149/1-1004 DPDEGSNGEL TYSLSSYTSD RERQLFSIDA STGEVRVSGE LDYEEASSYQ BACU004176/1-881 DPDEGQNGEV VYSFSSHISP RARELFGLSP RTGRLEVSGE LDYEESPVYQ bmy_09350T0/1-894 DPDEGQNGEV VYSFSSHISP RARELFGLSP RTGRLEVSGE LDYEESPVYQ ENSP00000264360/1-1040 DPDEGQNGEV VYSFSSHISP RARELFGLSP RTGRLEVSGE LDYEESPVYQ ENSBTAP00000026611/1-1046 DPDEGQNGEV VYSFSSHISP RARELFGLSP RTGRLEVSGE LDYEESPVYQ 351 400 ENSTTRP00000001149/1-1004 IYVQATDRGP VPMVGHCKVL VDIVDVNDNA PEVVLTDLYS PVPEDAAPNT BACU004176/1-881 VYVQAKDLGP NAVPAHCKVI VRVLDANDNA PEISFSTVKE AVSEGAAPGT bmy_09350T0/1-894 VYVQAKDLGP NAVPAHCKVI VKVLDANDNA PEISFSTVKE AVSEGAAPGT ENSP00000264360/1-1040 VYVQAKDLGP NAVPAHCKVL VRVLDANDNA PEISFSTVKE AVSEGAAPGT ENSBTAP00000026611/1-1046 VYVQAKDLGP NAVPAHCKVI VRVLDANDNA PEISFSTVKE AVSEGAAPGT 401 450 ENSTTRP00000001149/1-1004 VVALLSVNDQ DSGPNRKVSL GLEATLPFRL -NGFGNSYTL VVSGPLDREQ BACU004176/1-881 VVALFSVTDR DSEENGQVQC ELLGDVPFRL KSSFKNYYTI VTEAPLDREA bmy_09350T0/1-894 VVALFSVTDR DAEENGQVQC ELLGDVPFRL KSSFKNYYTI VTEAPLDREA ENSP00000264360/1-1040 VVALFSVTDR DSEENGQVQC ELLGDVPFRL KSSFKNYYTI VTEAPLDREA ENSBTAP00000026611/1-1046 VVALFSVTDR DSEENGQVQC ELLGDVPFRL KSSFKNYYTI VTEAPLDREA 451 500 ENSTTRP00000001149/1-1004 VAAYNITVTA TDGGVPQLTS QRTLQVEISD INDNPPSFLK DSYSIYIEEN BACU004176/1-881 GDSYTLTVVA RDRGEPALST SKSIQVQVSD VNDNAPRFSQ PVYDVYVTEN bmy_09350T0/1-894 GDSYTLTVVA RDRGEPALST SKSIQVQVSD VNDNAPRFSQ PVYDVYVTEN ENSP00000264360/1-1040 GDSYTLTVVA RDRGEPALST SKSIQVQVSD VNDNAPRFSQ PVYDVYVTEN ENSBTAP00000026611/1-1046 GDSYTLTVVA RDRGEPALST SKSIQVQVSD VNDNAPRFSQ PVYDVYVTEN 501 550 ENSTTRP00000001149/1-1004 NLPGVLLCTV QATDPDEKEN SEVTYSLMER EIQGLPVTSY VSINSASGSL BACU004176/1-881 NVPGAYIYAV SATDRDEGAN AQLAYSILEC QIQGMSVFTY VSINSENGYL bmy_09350T0/1-894 NVPGAYIYAV SASDRDEGAN AQLAYSILEC QIQGMSVFTY VSINSENGYL ENSP00000264360/1-1040 NVPGAYIYAV SATDRDEGAN AQLAYSILEC QIQGMSVFTY VSINSENGYL ENSBTAP00000026611/1-1046 NVPGAYIYAV SATDRDEGAN AQLAYSILEC QIQGMSVFTY VSINSENGYL 551 600 ENSTTRP00000001149/1-1004 YAVNSFDYEK FREFFVTVEA RDKGSP-PLS STVTTNVYVV DVNDHAPHIL BACU004176/1-881 YALRSFDYEQ LKDFSFQVEA RDAGSPQALA GNATVNILIV DQNDNAPAIV bmy_09350T0/1-894 YALRSFDYEQ LKDFSFQVEA RDAGSPQALA GNATVNILIV DQNDNAPAIV ENSP00000264360/1-1040 YALRSFDYEQ LKDFSFQVEA RDAGSPQALA GNATVNILIV DQNDNAPAIV ENSBTAP00000026611/1-1046 YALRSFDYEQ LKDFSFQVEA RDAGSPQALA GNATVNILIV DQNDNAPAIV 601 650 ENSTTRP00000001149/1-1004 YP-TSTNSSA AIEMVPRTAP AGYLVTKVIA MDSDSGQNAW LFYHLAQISD BACU004176/1-881 APLPGRNGTP AREVLPRSAE PGYLLTRVAA VDADDGENAR LTYSIVRGNE bmy_09350T0/1-894 APLPGRNGTP AREVLPRSAE PGYLLARVAA VDADDGENAR LTYSIVRGNE ENSP00000264360/1-1040 APLPGRNGTP AREVLPRSAE PGYLLTRVAA VDADDGENAR LTYSIVRGNE ENSBTAP00000026611/1-1046 APLPGRNGTP AREVLPRSAE PGYLLTRVAA VDADDGENAR LTYSIVRGNE 651 700 ENSTTRP00000001149/1-1004 LDLFKVELHT GEIRTTRKMG D--ESGTTFN LTVVVRDNGE PSLSASVAIT BACU004176/1-881 MNLFRMDWRT GELRTARRVP AKRDPQRPYE LVIEVRDHGQ PPLSSTATLV bmy_09350T0/1-894 MNLFRMDWRT GELRTARRVP AKRDPQRPYE LVIEVRDHGQ PPLSSTATLV ENSP00000264360/1-1040 MNLFRMDWRT GELRTARRVP AKRDPQRPYE LVIEVRDHGQ PPLSSTATLV ENSBTAP00000026611/1-1046 MNLFRMDWRT GELRTARRVP AKRDPQRPYE LVIEVRDHGQ PPLSSTATLV 701 750 ENSTTRP00000001149/1-1004 VAVVDRVSRI LPDTQR---- -----HVRSP R-----TYSE ITLYLIIALS BACU004176/1-881 VQLVD--GAV EPQGGGGGGG GGAGEHXXXX XXXXXXXXXX XXXXXXXXXX bmy_09350T0/1-894 VQLVD--GAV EPQGGG--GG GGSGEHQRPS RSGGGETSLD LTLILIIALG ENSP00000264360/1-1040 VQLVD--GAV EPQGGGGSGG GGSGEHQRPS RSGGGETSLD LTLILIIALG ENSBTAP00000026611/1-1046 VQLVD--GAV EPQGGGGGGG GGSGEHQRPS RSGGGETSLD LTLILIIALG 751 800 ENSTTRP00000001149/1-1004 TVSFIFLLTI IVLSIIKCYR ------YTAY GTACC----- ---GGFCGVR BACU004176/1-881 XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09350T0/1-894 SVSFIFLLAM IVLA-VRCQK EKKLNIYTCL ASDCCLCCCC CSGGGSTCCG ENSP00000264360/1-1040 SVSFIFLLAM IVLA-VRCQK EKKLNIYTCL ASDCCLCCCC CGGGGSTCCG ENSBTAP00000026611/1-1046 SVSFIFLLAM IVLA-VRCQK EKKLNIYTCL ASDCCL-CCC CGSGGSTCCG 801 850 ENSTTRP00000001149/1-1004 ERCPAELYKQ ANNNIDARLP HGLKVQPHFI EVRGNGSL-- ---TKTYCYK BACU004176/1-881 XXGRGR---- ---------- -GVRGAPAPQ PLRRRGDLAG PHPHPHH--- bmy_09350T0/1-894 RQARARKKKL SKSDIMLVQS SNVPSNPAQV PVEESGSFGS HHHNQNYCYQ ENSP00000264360/1-1040 RQARARKKKL SKSDIMLVQS SNVPSNPAQV PIEESGGFGS HHHNQNYCYQ ENSBTAP00000026611/1-1046 RQARARKKKL SKSDIMLVQS SNVPSNPAQV PVEESGGFGS HHHNQNYCYQ 851 900 ENSTTRP00000001149/1-1004 ACLTAGSGSD TFMFYNTGAQ TGLGPGGAQA AAGDSRHLTG Q--SGQSAGN BACU004176/1-881 ------RAGL GVLH------ --L-PAGHDR A-------CR ALPKREEAQH bmy_09350T0/1-894 VCLTPESAKT DLMF------ --LKPCSPSR STDTEHNPCG AIVTGYTDQQ ENSP00000264360/1-1040 VCLTPESAKT DLMF------ --LKPCSPSR STDTEHNPCG AIVTGYTDQQ ENSBTAP00000026611/1-1046 VCLTPESAKT DLMF------ --LKPCSPSR STDTEHNPCG AIVTGYTDQQ 901 950 ENSTTRP00000001149/1-1004 LIILKNEAVS QNEPRQPNPD WRYSASLRAG MHSSVHLEEA GILRAGPGGP BACU004176/1-881 LH-VSGQRLL PLLLLLQRWR LD-------- ---------- ---------- bmy_09350T0/1-894 PDIISNGSIL SNEVRLKRQD HH-------- ---------- ---------- ENSP00000264360/1-1040 PDIISNGSIL SNETKHQRAE LSYLVDRPRR VNSSAFQEAD IVSSKDSGHG ENSBTAP00000026611/1-1046 PDIISNGSIL SNETKHQRAE LSYLVDRPRR VNSSAFQEAD IVSSKDSGHG 951 1000 ENSTTRP00000001149/1-1004 DQQWPTVSSA TPEPEAGE-- ------VSPP VGAGVNSNSW TFKYGPGNPK BACU004176/1-881 ---------- ---------- ---------- ---------- ---------- bmy_09350T0/1-894 ---------- ---------- ---------- ---------- ---------- ENSP00000264360/1-1040 DSEQGDSDHD ATNRAQSAGM DLFSNCTEEC KALGHSDRCW MPSFVPSDGR ENSBTAP00000026611/1-1046 DSEQGDSDHD ATNRGQSAGM DLFSNCTEEC KALGHSDRCW MPSFVPSDGR 1001 1050 ENSTTRP00000001149/1-1004 QSGPGELPDK FIIPGSPAII SIRQEPTNSQ IDKSDFITFG KKEE--TKKK BACU004176/1-881 ---------- ---LLRPPS- ---------P GAQEETQQVG HHAG--AKLQ bmy_09350T0/1-894 ---------- ---LSSPPSE SLL------- ---------- ---------- ENSP00000264360/1-1040 QAADYRSNLH VPGMDSVPDT EVFETPEAQP GAERSFSTFG KEKALHSTLE ENSBTAP00000026611/1-1046 QAADYRSNLH VPGMDSVPDT EVFETPEAQP GAERSFSTFG KEKALHSTLE 1051 1100 ENSTTRP00000001149/1-1004 KKKKKGNKTQ EKKEKGNSTT DNSDQ----- --- BACU004176/1-881 RTQ------- ---------- ---------- --- bmy_09350T0/1-894 ---------- ---------- ---------- --- ENSP00000264360/1-1040 RKELDGLLTN TRAPYKPPYL TRKRIC---- --- ENSBTAP00000026611/1-1046 RKELDGLLSN TRAPYKPPYL NHFHPFSYFV HWK