KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:42 2014 Check: 00 .. Name: ENSP00000391447/1-1435 Len: 1457 Check: 7977 Weight: 1.00 Name: ENSBTAP00000026618/1-1403 Len: 1457 Check: 6628 Weight: 1.00 Name: BACU014526/1-664 Len: 1457 Check: 1627 Weight: 1.00 Name: bmy_01050T0/1-1425 Len: 1457 Check: 115 Weight: 1.00 Name: ENSTTRP00000009697/1-1426 Len: 1457 Check: 6553 Weight: 1.00 // 1 50 ENSP00000391447/1-1435 MREKGRRKKG RTWAEAAKTV LEKYPNTPMS HKEILQVIQR EGLKEIRSGT ENSBTAP00000026618/1-1403 ---------- ---------- ---------- ---------- -------SGT BACU014526/1-664 MREKGRRKKG RTWAEAAKTV LEKYPNTPMS HKEILQVIQR EGLKEI-SGT bmy_01050T0/1-1425 ---------- -MTVAAACTV LEKYPNTPMS HKEILQVIQR EGLKEI-SGT ENSTTRP00000009697/1-1426 ---------- --W---EVHV LEKYPNTPMS HKEILQVIQR EGLKEISSGT 51 100 ENSP00000391447/1-1435 SPLACLNAML HTNSRGEEGI FYKVPGRMGV YTLKKDVPDG VKELSEGSEE ENSBTAP00000026618/1-1403 SPLACLNAML HTNSRGEEGI FYKVPGRMGV YTLKKDVPDG VKELSEGSEE BACU014526/1-664 SPLACLNAML HTNSRGEEGI FYKVPGRMGV YTLKKDVPDG VKELSEGSEE bmy_01050T0/1-1425 SPLACLNAML HTNSRGEEGI FYKVPGRMGV YTLKKDVPDG VKELSEGSEE ENSTTRP00000009697/1-1426 SPLACLNAML HTNSRGEEGI FYKVPGRMGV YTLKKDVPDG VKELSEGSEE 101 150 ENSP00000391447/1-1435 SSDGQSDSQS SENSSSSSDG GSNKEGKKSR WKRKVSS--- --SSPQSGCP ENSBTAP00000026618/1-1403 SSDGQSDSQS SENSSSSSDG GSNKEGKKSR WKRKVSSRLS QPSSPHSGCP BACU014526/1-664 SSDGQSDSQS SENSSSSSDG GSNKEGKKSR WKRKVSSRLS QPSSPQSGCP bmy_01050T0/1-1425 SSDGQSDSQS SENSSSSSDG GSNKEGKKSR WKRKVSSRLS QPSSPQSGCP ENSTTRP00000009697/1-1426 SSDGQSDSQS SENSSSSSDG GSNKEGKKSR WKRKXXX--- --XXXXXXXX 151 200 ENSP00000391447/1-1435 SPTIPAGKVI SPSQKHSKKA LKQALKQQQQ KK-QQQQCRP SISISSNQHL ENSBTAP00000026618/1-1403 SPTIPAGKVI SSSQKHSKKA LKQALKQQQQ KKQQQQQCRP SMSISSNQHL BACU014526/1-664 SPTIPAGKVI SPSQKHSKKA LKQALKQQQQ KKQQQQQCRP SMSISSNQHL bmy_01050T0/1-1425 SPTIPAGKVI SPSQKHSKKA LKQALKQQQQ KKQQQQQCRP SMTISSNQHL ENSTTRP00000009697/1-1426 XXXXXXXXXX XXXXXXXXXX XXXALKQQQQ KKQQQQQCRP SMSISSNQHL 201 250 ENSP00000391447/1-1435 SLKTVKAASD SVPAKPATWE GKQSDGQTGS PQNSNSSF-S SSVKVENTLL ENSBTAP00000026618/1-1403 SLKTVKASSD PVPAKPAIWE GKQSDGQSSS PQNSNSSFSS SSVKVENHLL BACU014526/1-664 SLKTVKAASD SVAAKPAIWE GKQSDGQSSS PQNSNSSF-S SSVKVENPLL bmy_01050T0/1-1425 SLKTVKAASD SVAAKPAIWE GKQSDGQSSS PQNSNSSF-S SSVKVENPLL ENSTTRP00000009697/1-1426 SLKTVKAASD SVPAKPAIWE GKQSDGQSSS PQNSNSSF-S SSVKVENPLL 251 300 ENSP00000391447/1-1435 GLGKKSFQRS ERLHTRQMKR TKCADIDVET PDSILVNTNL RALINKHTFS ENSBTAP00000026618/1-1403 GLGKKSFQRS DRLHTRQMKR TKCAEIDVET PDSILVNTNL RALINKHTFS BACU014526/1-664 GLGKKSFQRS DRLHTRQMKR TKCAEIDVET PDSILVNTNL RALINKHTFS bmy_01050T0/1-1425 SLGKKSFQRS DRLHTRQMKR TKCAEIDVET PDSILVNTNL RALINKHTFS ENSTTRP00000009697/1-1426 GLGKKSFQRS DRLHTRQMKR TKCAEIDVET PDSILVNTNL RALINKHTFS 301 350 ENSP00000391447/1-1435 VLPGDCQQRL LLLLPEVDRQ VGPDGLMKLN GSALNNEFFT SAAQGWKERL ENSBTAP00000026618/1-1403 VLPGDCQQRL LLLLPEVDRQ VGPDGLMKLN GSALNNEFFT SAAQGWKERL BACU014526/1-664 VLPGDCQQRL LLLLPEVDRQ VGPDGLMKLN GSALNNEFFT SAAQGWKERL bmy_01050T0/1-1425 VLPGDCQQRL LLLLPEVDRQ T--------- -------ILI SISYCYESAP ENSTTRP00000009697/1-1426 VLPGDCQQRL LLLLPEVDRQ VGPDGLMKLN GSALNNEFFT SAAQGWKERL 351 400 ENSP00000391447/1-1435 SEGEFTPEMQ VRIRQEIEKE KKVEPWKEQF FESYYGQSSG LSLEDSKKLT ENSBTAP00000026618/1-1403 SEGEFTPEMQ VRIRQEIEKE KKVEPWKEQF FESYYGQSSG LSLEDSKKLT BACU014526/1-664 SEGEFTPEMQ VRIRQEIEKE KKVEPWKEQF FESYYGQSSG LSLEDSKKLT bmy_01050T0/1-1425 VKGEFTPEMQ VRIRQEIEKE KKVEPWKEQF FESYYGQSSG LSLEDSKKLT ENSTTRP00000009697/1-1426 SEGEFTPEMQ VRIRQEIEKE KKVEPWKEQF FESYYGQSSG LSLEDSKKLT 401 450 ENSP00000391447/1-1435 ASPSDPKVKK TPAEQPKSMP VSEASLIRIV PVVSQSECKE EALQMSSPGR ENSBTAP00000026618/1-1403 ASPNDPKVKK TPAEQPKSTL PSEASPVSVV PVIPQLESKE EVLQMPSPVR BACU014526/1-664 ASPNDPKVKK TPAEQPKSML PSEASPVSIV PVIPQLVSKE EVLQLPSPVR bmy_01050T0/1-1425 ASPNDPKVKK TPAEQPKSML PSEASPVSIV PVIPQLVSKE EVLQLPSAVR ENSTTRP00000009697/1-1426 ASPNDPKVKK TPAEQPKSML PSEASPVNIV SVIPQLVSKE EVLQLPSPVR 451 500 ENSP00000391447/1-1435 KEECESQGEV QPNFSTSSEP LLSSALNTHE LSSILPIKCP KDEDLLEQKP ENSBTAP00000026618/1-1403 KEEHESQDKT QPH---STEP LLSPATNTNE LSSIPPIKCP KDEALVEQKP BACU014526/1-664 KEEHESQDKM QPN-SKSPEP LLSSATNTNE LSSVPPIKCP KDEALLEQKP bmy_01050T0/1-1425 KEEHESQDKM QPN-SKSPEP LLSSATNTNE LSSVPPIKCP KDEALLEQKP ENSTTRP00000009697/1-1426 KEERESQDKM QPK-SKSPEP LLSSAPNTDE LSSVPPIKCP KDEALLEQKP 501 550 ENSP00000391447/1-1435 VTSAEQESEK -NHLTTASNY NKSESQESLV TSPSKPKSPG VEKPIVKPTA ENSBTAP00000026618/1-1403 VASAEQESEK KNHLTTASNY NKNESQEALV TSLSKPKSPG VETTVMKPTV BACU014526/1-664 VASAEQESEK ENHLTTTSNY NKNESQEALV TSLSKPKSPG VETTVVKPIV bmy_01050T0/1-1425 VASAEQESEK ENHLTTTSNY NKNESQEALV TSLSKPKSPG VETTVVKPIV ENSTTRP00000009697/1-1426 VASAEQKSEK ESHLTTTSNY NKNESQDALV TSLSKPKSPG VETTVVKPIV 551 600 ENSP00000391447/1-1435 GAGPQETNMK EPLATLVDQS PESLKRKSSL TQEEAPVSWE KRPRVTENRQ ENSBTAP00000026618/1-1403 EASPQETTMK EPPSTLADHS PESLKRKSSL TQEEAPTSWE KRPRVTEHRQ BACU014526/1-664 EAGLQETTMK EPPSTLADHS PESLKRKSSV TQEEAPTNWE KRPRVTENRQ bmy_01050T0/1-1425 EAGLQETTMK EPPSTLADHS PESLKRKSSV TQEEAPTSWE KRPRVTENRQ ENSTTRP00000009697/1-1426 EAGLQETTMK EPPSALADHS PENLKRKPSV TQEEAPISWE KRPRVTEDRQ 601 650 ENSP00000391447/1-1435 HQQPFQVSPQ PFLNRGDRIQ VRKVPPLKIP VSRISPMPFH PSQVSPRARF ENSBTAP00000026618/1-1403 HQQPFQVSPQ PFLSRGDRFQ VRRVPPLKIP VSRISPMPFP TSQVSPRARF BACU014526/1-664 HQQPFQVSPQ PFLSRGDRFQ VRKVPPLKV- ---------- ---------- bmy_01050T0/1-1425 HQQPFQVSPQ PFLSRGDRFQ VRKVPPLKIP VSRISPMPFP TSQVSPRARF ENSTTRP00000009697/1-1426 HQQPFPVSPQ PFLSRGDRFQ VRKVPPLKIP VSRISPMPFP TSQVSPRARF 651 700 ENSP00000391447/1-1435 PVSITSPNRT GARTLADIKA KAQLVKAQRA AAAAAAAAAA AASVGGTIPG ENSBTAP00000026618/1-1403 PISITSPNRT GARTLADIKA KAQLVKAQRA AAAAAAAAAA AASVGGTIPG BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 PISITSPNRT GARTLADIKA KAQLVKAQRA AAAAAAAAAA AASVGGTIPG ENSTTRP00000009697/1-1426 PISITSPNRT GARTLADIKA KAQLVKAQRA AAAAAAAAAA AASVGGTIPG 701 750 ENSP00000391447/1-1435 PGPGGGQGPG EGGEGQTARG GSPGSDRVSE TGKGPTLELA GTGSRGGTRE ENSBTAP00000026618/1-1403 PGPGGGQGPG EGGERRTARG GDPDSDKVSE PSKGPALELA GTGSRGGTRE BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 PGPGGGQGPG EGAERRTARG GSPDSNRVSE TGKGPTLELA GTGSRGGTRE ENSTTRP00000009697/1-1426 PGPGGGQGPG EGAERRTARG GSPDSNRVSE TGKGPTLELA GTGSRGGTRE 751 800 ENSP00000391447/1-1435 LLPCGPETQP QSETKTTPSQ AQPHSVSGAQ LQQTPPVPPT PAVSGACTSV ENSBTAP00000026618/1-1403 LLPAGPDTQP QSETR-TAGQ PQPLSGPGAQ LQQTPSVPPA SAVGGACAGV BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 LLPCGPETQP QSETK-TPGQ AQSHSVSGAQ LQQTSSVPPP SAISGACSSV ENSTTRP00000009697/1-1426 LLPCGPETQP QSETK-TPGQ AQSHSVSGAQ LQQTSSVPPP SAISGACSSV 801 850 ENSP00000391447/1-1435 PSPAH----- --IEKLDNEK LNPTRATATV ASVSHPQGPS SCRQEKA-PS ENSBTAP00000026618/1-1403 PSPAHIHALP PALGKLSNEK LNPPRVTGTV ASLSQPQGPS NGRQEKAPPA BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 PSPAHANTPP PALGKVSNEK LNPTRAAATV ASLSHPQGPS NGRQEKAPPT ENSTTRP00000009697/1-1426 PSPAH----- --VGKVSNEK LNPTRAAATV ASLSHPQGPS NGRQEKAPPT 851 900 ENSP00000391447/1-1435 PTGPALISGA SPVHCAADGT VELKAGPSKN IPNPSASSKT DASVPVAVTP ENSBTAP00000026618/1-1403 PADPALIMGA SPVHFAAAGA VEPKAGSSKN APNPPASAEI SASASVDTTA BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 PADPALIAGA SPVHFAVDGT VEPKAGSSKN TPNPPASAEI SASASVDMTP ENSTTRP00000009697/1-1426 PADPALIAGA SPVHFAVDGT VEPKAGSSKN TPNPPASAEI SASASVDMTP 901 950 ENSP00000391447/1-1435 SPLTSLLTTA TLEKLPVPQV SATTAPAGSA PPSSTLPAAS SLKTPGTSLN ENSBTAP00000026618/1-1403 SPLTSLLTTA TLEKLPVPQV SVTTTPTGSA PSLSTLPAAS SLKTPGTSSH BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 SPLTSLLTTA SLEKLPVPQV VVTIAPTGSA PSSSTLPAAS SLKTLGASSS ENSTTRP00000009697/1-1426 SPLTSLLATA SLEKLPVPQV VVTIAPTGSA PSSSTLPAAS SLKTPGASSS 951 1000 ENSP00000391447/1-1435 MNGPTLRPTS SIPANNPLVT QLLQGKDVPM EQILPKPLTK VEMKTVPLTA ENSBTAP00000026618/1-1403 MNGPISRPSS SIPANNPLVT QLLQGKDVPM EQILPKPLTK VEMKTVPLTT BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 MNGPISRPSS NIPANNPLVT QLLQGKDVPL EQILPKPLTK VEMKTVPLTT ENSTTRP00000009697/1-1426 MNGPISRPSS NIPANNPLVT QLLQGKDVPL EQILPKPLTK VEMKTVPLTT 1001 1050 ENSP00000391447/1-1435 KEERGM--GA LIATNTTENS TREEVNERQS HPATQQQLGK TLQSKQLPQV ENSBTAP00000026618/1-1403 KEEKGV--GA LIGTSVTENS TREEVHERQS HPAA-QHLGK TLQSKQLPQV BACU014526/1-664 ---------- ---------R EREELKKKDG ---------- -LNTKFL-VV bmy_01050T0/1-1425 KEEKGMMIGA LAGTSVTENS TREEVNERQS HPAT-QQLGK SLQSKQLPQV ENSTTRP00000009697/1-1426 KEEKGMMIGA LAGTSVTENS TREEVNERQS HPAT-QQLGK SLQSKQLPQV 1051 1100 ENSP00000391447/1-1435 PRPLQLFSAK ELRDSSIDTH QYHEGLSKAT QDQILQTLIQ RVRRQNLLSV ENSBTAP00000026618/1-1403 PRPLQLFSGK DLRDSGIDTH QYQEGLSKAT QDQILQTLSQ RVRRQNILSF BACU014526/1-664 PTKFQIF--- ---------- ---------- ---------- -------VVF bmy_01050T0/1-1425 PRPLQLFSGK DLRDASIDTH QYQEGLSKAT QDQILQTLIQ RVRRQNVLSF ENSTTRP00000009697/1-1426 PRPLQLFSGK DLRDASIDTH QYQEGLSKAT QDQILQTLIQ RVRRQNVLSF 1101 1150 ENSP00000391447/1-1435 VPPSQFNFAH SGFQLEDIST SQRFMLGFAG RRTSKPAMAG HYLLNISTYG ENSBTAP00000026618/1-1403 VQPSQFNFTH SGFPLEDIST SQRFMLGFAG RRTSKPAMAG HYLLNISTYG BACU014526/1-664 LN-------- ---------- ---------- ------AEAA VYI------- bmy_01050T0/1-1425 VQPSQFNFTH SGFQLEDIST SQRFMLGFAG RRTSKPAMAG HYLLNISTYG ENSTTRP00000009697/1-1426 VQPSQFNFTH SGFQLEDIST SQRFMLGFAG RRTSKPAMAG HYLLNISTYG 1151 1200 ENSP00000391447/1-1435 RGSESFRRTH SVNPEDRFCL SSPTEALKMG YTDCKNATGE SSSSKEDDTD ENSBTAP00000026618/1-1403 RGTESFRRTH SVNPEDRFCL SSPTEALKMG YTDCKNAAGD SSSGKEDDTD BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 RGSESLRRTH SVNPEDRFCL SSPTEALKMG YTDCKNAAGD SSSXKEDDTD ENSTTRP00000009697/1-1426 RGSESLRRTH SVNPEDRFCL SSPTEALKMG YTDCKNAAGD SSSGKEDDTD 1201 1250 ENSP00000391447/1-1435 EESTGDEQES VTVKEEPQVS QSAGKGDTSS GPHSRETLST SDCLASKNVK ENSBTAP00000026618/1-1403 EESTGDEQES VPVKEEPQAS QSSGKCDASL GPHSRETLST SDCSAKKNVK BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 EESTGDEQES VMVKEEPQAS QSSGKCEASS GPHSRETLST SDCSAKKNVK ENSTTRP00000009697/1-1426 EESTGDEQES VMVKEEPQAS QSSGKCEASS GPHSRETLST SDCSAKKNVK 1251 1300 ENSP00000391447/1-1435 AEIPLNEQTT LSKENYLFTR GQTFDEKTLA RDLIQAAQKQ MAHAVRGKAI ENSBTAP00000026618/1-1403 AETPVPEQTP LSKENYLFTR GQTFDEKTLA RDFIQAAQKQ MAHAVRGKTM BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 AETPVPEQTT LSKENYLFTR SQTFDEKTLA RDFIQAAQKQ MAHAVRGKTV ENSTTRP00000009697/1-1426 AEMPVPEQTP LSKENYLFTR GQTFDEKTLA RDFIQAAQKQ MAHAVRGKTV 1301 1350 ENSP00000391447/1-1435 RSSPELFSST VLPLPADSPT HQPLLLPPLQ TPKLYGSPTQ IGPSYRGMIN ENSBTAP00000026618/1-1403 RSSPELFNST SLPLPADSPT HQSLLLPPLQ TPKLYGSPTQ IGPSYRGMIN BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 RSSPELFNST ALPLPADSPT HQSLLLPPLQ TPKLYGGPTQ IGPSYRGMIN ENSTTRP00000009697/1-1426 RSSPELFNST ALPLPADSPT HQSLLLPPLQ TPKLYGSPTQ IGPSYRGMIN 1351 1400 ENSP00000391447/1-1435 VSTSSDMDHN SAVPG----S QVSSNVGDVM SFSVTVTTIP ASQAMNPSSH ENSBTAP00000026618/1-1403 VSTSSDMDHN SSVPGMPDCS QVSSNVGDVM SFSVTVTAIP ASQAVNAGSR BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 VSTSSDMDHS AAVAGMPDCS QVSSNVGDVM SFSVTVTTIP ASQAMNPSNH ENSTTRP00000009697/1-1426 VSTSSDMDHN SAVPGMPDCS QVSSNVGDVM SFSVTVTTIP ASQAMNPSNH 1401 1450 ENSP00000391447/1-1435 GQTIPVQAFS EENSIEGTPS KCYCRLKAMI MCKGCGAFCH DDCIGPSKLC ENSBTAP00000026618/1-1403 GQTIPVQAFP EESSVEDTPS KCYCRLKAMI MCKGCGAFCH DDCIGPSKLC BACU014526/1-664 ---------- ---------- ---------- ---------- ---------- bmy_01050T0/1-1425 GQTIPVQAFS EENSIEDTPS KCYCRLKAMI MCKGCGAFCH DDCIGPSKLC ENSTTRP00000009697/1-1426 GQTIPVQAFP EENSIEDTPS KCYCRLKAMI MCKGCGAFCH DDCIGPSKLC 1451 1500 ENSP00000391447/1-1435 VSCLVVR ENSBTAP00000026618/1-1403 VSCLVVR BACU014526/1-664 ------- bmy_01050T0/1-1425 VSCLVVR ENSTTRP00000009697/1-1426 VSCLVVR