KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:46 2014 Check: 00 .. Name: bmy_21227T0/1-735 Len: 757 Check: 8041 Weight: 1.00 Name: ENSTTRP00000007092/1-622 Len: 757 Check: 2905 Weight: 1.00 Name: ENSBTAP00000026649/1-626 Len: 757 Check: 3029 Weight: 1.00 Name: ENSP00000352314/1-628 Len: 757 Check: 233 Weight: 1.00 Name: BACU001579/1-624 Len: 757 Check: 9375 Weight: 1.00 // 1 50 bmy_21227T0/1-735 MSRSGDRTST FDPSHSDNLL HGLNLLWRKQ LFCDVTLTAQ GQQFHCHKAV ENSTTRP00000007092/1-622 MSRSGDRTST FDPSHSDNLL HGLNLLWRKQ LFCDVTLTAQ GQQFHCHKAV ENSBTAP00000026649/1-626 MSRSGDRTST FDPSHSDNLL HGLNLLWRKQ LFCDVTLTAQ GQQFHCHKAV ENSP00000352314/1-628 MSRSGDRTST FDPSHSDNLL HGLNLLWRKQ LFCDVTLTAQ GQQFHCHKAV BACU001579/1-624 MSRSGDRTST FDPSHSDNLL HGLNLLWRKQ LFCDVTLTAQ GQQFHCHKAV 51 100 bmy_21227T0/1-735 LASCSQYFRS LFSSHPPLGG GVAGGQDGLG PPKD--QQPP QQQQP----P ENSTTRP00000007092/1-622 LASCSQYFRS LFSSHPPLGG GV-GGQDGLG PPKD--QQPP QQQPP----P ENSBTAP00000026649/1-626 LASCSQYFRS LFSSHPPLGG GV-GGQDGLG APKDPPQQPP QQQPP----P ENSP00000352314/1-628 LASCSQYFRS LFSSHPPLGG GV-GGQDGLG APKD-QQQPP QQQPSQQQQP BACU001579/1-624 LASCSQYFRS LFSSPPPLGG GVGGGQDGLG PPKD--QQPP QQQQP----P 101 150 bmy_21227T0/1-735 PP-QEEPGTP SSSPDDKLLT SPRAINNLVL QGCSAIGLRL VLEYLYTANV ENSTTRP00000007092/1-622 P--QEEPGTP SSSPDDKLLT SPRAINNLVL QGCSSIGLRL VLEYLYTANV ENSBTAP00000026649/1-626 PPAQEEPVTA SSSPDDKLLT SLRAINNLVL QGCSSIGLRL VLEYLYTANV ENSP00000352314/1-628 PP-QEEPGTP SSSPDDKLLT SPRAINNLVL QGCSSIGLRL VLEYLYTANV BACU001579/1-624 PP-QEEPGTP SSSPDDKLLT SPRAINNLVL QGCSAIGLRL VLEYLYTANV 151 200 bmy_21227T0/1-735 TLSLDTVEEV LSVSKILHIP QVTKLCVQFL NDQISVQNYK QVCKIAALHG ENSTTRP00000007092/1-622 TLSLDTVEEV LSVSKILHIP QVTKLCVQFL NDQISVQNYK QVCKIAALHG ENSBTAP00000026649/1-626 TLSLDTVEEV LSVSKILHIP QVTKLCVQFL NDQISVQNYK QVCKIAALHG ENSP00000352314/1-628 TLSLDTVEEV LSVSKILHIP QVTKLCVQFL NDQISVQNYK QVCKIAALHG BACU001579/1-624 TLSLDTVEEV LSVSKILHIP QVTKLCVQFL NDQISVQNYK QVCKIAALHG 201 250 bmy_21227T0/1-735 LEETKKLANK YLVEDVLLLN FEEMRALLDS LPPPVESELA LFQMSVLWLE ENSTTRP00000007092/1-622 LEETKKLANK YLVEDVLLLN FEEMRALLDS LPPPVESELA LFQMSVLWLE ENSBTAP00000026649/1-626 LEETKKLANK YLVEDVLLLN FEEMRALLDS LPPPVESELA LFQMSVLWLE ENSP00000352314/1-628 LEETKKLANK YLVEDVLLLN FEEMRALLDS LPPPVESELA LFQMSVLWLE BACU001579/1-624 LEETKKLANK YLVEDVLLLN FEEMRALLDS LPPPVESELA LFQMSVLWLE 251 300 bmy_21227T0/1-735 HDRETRMQYA PDLMKRLRFA LIPAPELVER VQSVDFMRTD PVCQKLLLDA ENSTTRP00000007092/1-622 HDRETRMQYA PDLMKRLRFA LIPAPELVER VQSVDFMRTD PVCQKLLLDA ENSBTAP00000026649/1-626 HDRETRMQYA PDLMKRLRFA LIPAPELVER VQSVDFMRTD PVCQKLLLDA ENSP00000352314/1-628 HDRETRMQYA PDLMKRLRFA LIPAPELVER VQSVDFMRTD PVCQKLLLDA BACU001579/1-624 HDRETRMQYA PDLMKRLRFA LIPAPELVER VQSVDFMRTD PVCQKLLLDA 301 350 bmy_21227T0/1-735 MNYHLMPFRQ HCRQSLASRR KVEEPELAAD LRNKGTFMTL GRFSKPMPMA ENSTTRP00000007092/1-622 MNYHLMPFRQ HCRQSLASXX X--------- -XXXXXXXXX XX-------- ENSBTAP00000026649/1-626 MNYHLMPFRQ HCRQSLASRI R--------- -SNKKMLLLV GG-------- ENSP00000352314/1-628 MNYHLMPFRQ HCRQSLASRI R--------- -SNKKMLLLV GG-------- BACU001579/1-624 MNYHLMPFRQ HCRQSLASRI R--------- -SNKKMLLLV GG-------- 351 400 bmy_21227T0/1-735 VPLPRGESLL FLISYIRCRT SFAAVRRASG VRVWLSAPTA PASGLVPLKT ENSTTRP00000007092/1-622 --XXXX---- ---------- ---------- -------XXX XXXXXXXXXX ENSBTAP00000026649/1-626 --LPPG---- ---------- ---------- -------PDR LPSNLVQYYD ENSP00000352314/1-628 --LPPG---- ---------- ---------- -------PDR LPSNLVQYYD BACU001579/1-624 --LPPG---- ---------- ---------- -------PDR LPSNLVQYYD 401 450 bmy_21227T0/1-735 DEASEMERRT KRERPRLEKK RVLENVEASL KDAEGQMCLR VCVRSPRHCV ENSTTRP00000007092/1-622 XXXXXXXXXX X--MPYNSAH HCVVEVENFL FVLGGEDQW- ----NPNXXX ENSBTAP00000026649/1-626 DEKKTWKILT I--MPYNSAH HCVVEVENFL FVLGGEDQW- ----NPNGKH ENSP00000352314/1-628 DEKKTWKILT I--MPYNSAH HCVVEVENFL FVLGGEDQW- ----NPNGKH BACU001579/1-624 DEKKTWKILT I--MPYNSAH HCVVEVENFL FVLGGEDQW- ----NPNGKH 451 500 bmy_21227T0/1-735 LTPQNQAHRN ILGKWKGLEE GMENLCSYLK GDAKVFLVRI SRKQHSPEFS ENSTTRP00000007092/1-622 XXXXXXXXXX XXXXXXXXXX XXXXRASFYA CRLDKHLYVI GGRNETGYLS ENSBTAP00000026649/1-626 STNFVSRYDP RFNSWIQLPP MQERRASFYA CRLDKHLYVI GGRNETGYLS ENSP00000352314/1-628 STNFVSRYDP RFNSWIQLPP MQERRASFYA CRLDKHLYVI GGRNETGYLS BACU001579/1-624 STNFVSRYDP RFNSWIQLPP MQERRASFYA CRLDKHLYVI GGRNETGYLS 501 550 bmy_21227T0/1-735 VTADIQLSAS LYIYMSITRQ RRLQATILDL SAKQDLM--- IEKDSVKDWL ENSTTRP00000007092/1-622 SVECYNLETN EWRYVS-PLP QPLAAHAGAV HNGKIYISGG VHNGEYVPWL ENSBTAP00000026649/1-626 SVECYNLETN EWRYVS-SLP QPLAAHAGAV HNGKIYISGG VHNGEYVPWL ENSP00000352314/1-628 SVECYNLETN EWRYVS-SLP QPLAAHAGAV HNGKIYISGG VHNGEYVPWL BACU001579/1-624 SVECYNLETN EWRYVS-PLP QPLAAHAGAV HNGKIYISGG VHNGEYVPWL 551 600 bmy_21227T0/1-735 -----IVNLW YLKRLLNNKR KYQNSKDGFS NECFKEMEIF NMLKRRHTAT ENSTTRP00000007092/1-622 YCYDPVMDVW ARKQDMNTKR AI-------- ---------- ------HTLA ENSBTAP00000026649/1-626 YCYDPVMDVW ARKQDMNTKR AI-------- ---------- ------HTLA ENSP00000352314/1-628 YCYDPVMDVW ARKQDMNTKR AI-------- ---------- ------HTLA BACU001579/1-624 YCYDPVMDVW ARKQDMNTKR AI-------- ---------- ------HTLA 601 650 bmy_21227T0/1-735 ICHYRRIRSN KKMLLLVGGL PPGPDRLPSN LVQYYDDEKK TWKILTKTLY ENSTTRP00000007092/1-622 VM-------N DRLYAIGGNH LKGFSHLDVM LVECYDPKGD QWNILQTPIL ENSBTAP00000026649/1-626 VM-------N DRLYAIGGNH LKGFSHLDVM LVECYDPKGD QWNILQTPIL ENSP00000352314/1-628 VM-------N DRLYAIGGNH LKGFSHLDVM LVECYDPKGD QWNILQTPIL BACU001579/1-624 VM-------N DRLYAIGGNH LKGFSHLDVM LVECYDPKGD QWNILQTPIL 651 700 bmy_21227T0/1-735 KGSTNNKKLN RVEKSSGVGD IKKKTIGHST SETSCEQLSN YSVSTSVWQN ENSTTRP00000007092/1-622 EGRSGPGCAV LDDSIYLVGG Y-SWSMGAYK SSTIC----- YCPEKGSWTE ENSBTAP00000026649/1-626 EGRSGPGCAV LDDSIYLVGG Y-SWSMGAYK SSTIC----- YCPEKGSWTE ENSP00000352314/1-628 EGRSGPGCAV LDDSIYLVGG Y-SWSMGAYK SSTIC----- YCPEKGTWTE BACU001579/1-624 EGRSGPGCAV LDDSIYLVGG Y-SWSMGAYK SSTIC----- YCPEKGSWTE 701 750 bmy_21227T0/1-735 I-------IL GPLLTLNTLP AARHLDKAEH PVKTAEGCNG WGEIEDRASI ENSTTRP00000007092/1-622 LEGDVAEPLA GPACATVILP ACVPYNK--- ---------- ---------- ENSBTAP00000026649/1-626 LEGDVAEPLA GPACATVILP ACVPYNK--- ---------- ---------- ENSP00000352314/1-628 LEGDVAEPLA GPACVTVILP SCVPYNK--- ---------- ---------- BACU001579/1-624 LEGDVAEPLA GPACATVILP ACVPYNK--- ---------- ---------- 751 800 bmy_21227T0/1-735 PDGAKAQ ENSTTRP00000007092/1-622 ------- ENSBTAP00000026649/1-626 ------- ENSP00000352314/1-628 ------- BACU001579/1-624 -------