KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:46 2014 Check: 00 .. Name: ENSP00000415528/1-652 Len: 659 Check: 4738 Weight: 1.00 Name: ENSBTAP00000026650/1-655 Len: 659 Check: 39 Weight: 1.00 Name: ENSTTRP00000011637/1-563 Len: 659 Check: 8450 Weight: 1.00 Name: bmy_19477T0/1-499 Len: 659 Check: 7858 Weight: 1.00 Name: BACU002278/1-545 Len: 659 Check: 8756 Weight: 1.00 // 1 50 ENSP00000415528/1-652 ----MLDTIA RALQDLGRQV LPTLPSLSQE EVSIIWGNVS EFVRRQLTLH ENSBTAP00000026650/1-655 ----MLDTIL PSLQDVGRHL LPTLPSLSQE EVSTIWGNVS EFVERQLSLH ENSTTRP00000011637/1-563 ----ILDTIV PSLQDLGR-- MHTLPSLSKE EVSTIWGNVS EFVERQLSLH bmy_19477T0/1-499 MCQNSWNGSY PYTSEFFL-- LFFSPSLSAQ ---------- ---------- BACU002278/1-545 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000415528/1-652 KGVQIPAFGT FTFIRQKLEV GNNKFILIQR PVFIMVEKLV QIHGLKQNKV ENSBTAP00000026650/1-655 KGVQIPGLGT FTFMRQKLEV GNKKFFLIQR PVFIMAEKLV QIHGLKQNRV ENSTTRP00000011637/1-563 KGVQIPGLGT FTFTRQKLEV GNNKFILIQR PIFIMVEKLV QTHGLKQNK- bmy_19477T0/1-499 -GVQIPGLGT FTFTRQKLEV GNNKFILIQR PMFIMAEKLV QIHGLKQNKV BACU002278/1-545 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000415528/1-652 YTPGEIPIVP LNFVMISLEG PFNRDVVEGC VKETLLFLSR SISMKQNVEF ENSBTAP00000026650/1-655 YTPGDIPIVP LNFVMISLEG PFSRDIVEGC VKETLLFLSR SISIKQNVEF ENSTTRP00000011637/1-563 ---------- ---------- ---------- ---------- ---------- bmy_19477T0/1-499 YTPGDIPVVP LNFVMISLEG PFNRDTVERC VKETLLFLSR SISTKQNVEF BACU002278/1-545 ---------- ----MISLES PFNRDTVERC VKETLLFLSR SISTKQNVEF 151 200 ENSP00000415528/1-652 TFKGIGVLMI RDSKVKMRFY KDFLCTMDGS GALAKALANR PGTVDSVLSS ENSBTAP00000026650/1-655 TFKGIGVLMI KDSKVKMRFY KDFLCTMDGS GALAKALANR PDTVDSVLSS ENSTTRP00000011637/1-563 ---------- ---------- ---------- ---------R PDTVDSVLSS bmy_19477T0/1-499 TFKGIGVLVI KDGKVKMRFY KDFLCTVDGS GALARALANR PDTVDSVLSS BACU002278/1-545 TFKGIGVLVI KDGKVKMRFY KDFLCTMDGS GALARALANR PDTVDSVLSS 201 250 ENSP00000415528/1-652 REALRKWPSS VLAFPRIELK EMENKLPMET LVEECGENRE RKCKLKDQSD ENSBTAP00000026650/1-655 RENLGKRPSN VLAFPRIELK EMENKPPMET IAEEDGQNEQ KKDKLKDQSD ENSTTRP00000011637/1-563 RESLGKRPDS MLSFPRIELK EMENKLPMET TAEEGGQNGQ RKSKLKDQSD bmy_19477T0/1-499 RESLEKRPSS MLSFPRIELK EMENKLPMET TVEEGGQNGQ RKSKLKDQSD BACU002278/1-545 RESLGKRPNS MLSFPRTELK EMENKLPMET TVEEGGQNGQ RKSKLKDQSD 251 300 ENSP00000415528/1-652 KEEGTRDISS PKRLRDRQAL FPAKVTNVSL LEKFERSESG GKIMTPESLS ENSBTAP00000026650/1-655 KEVGVPEILS PKTAQDRPAV SSVKGTNVRL PNKLEQNGSG GRNMNLESAS ENSTTRP00000011637/1-563 KEEGVREILS PKVIQDRQAI SPTKATNVSF PYKLEQNGSG GKNMNIERLR bmy_19477T0/1-499 KEEGVREILS PKVIQDRQAI SPAKATNVSF PQKLEQNGSG GKNTNIERLP BACU002278/1-545 KEEGVREILS PKVIQDRQAI SPAKVTNVSF PQKLEQNGSG GKNTNIERLP 301 350 ENSP00000415528/1-652 YPSCLKHDSE MKPQTSPA-- CQDHNKAGQE MCYVCLQRAQ RNSLLYYSEE ENSBTAP00000026650/1-655 FPGGLKNDHA MKPKISPGTS CKDHHRAGQE MCYICLQRAQ RNSPLYYTEE ENSTTRP00000011637/1-563 SLGGLKNDNE MKPKISPATS CQYHNRTGQE MCYVCLQRAQ RNSPLYYGEE bmy_19477T0/1-499 SLGGLKNDNE MKPKISPATS CQDHNRAG-- ---------- ---------- BACU002278/1-545 SLGGLKNDNE MKPKIPPATS CQDHNRAGQE MCYVCLQRAQ RNSPLYYSEE 351 400 ENSP00000415528/1-652 R-RREIEDER LIQQYQMLKD QEALFRHQMK SLATREQNQK NAAYNLGVAE ENSBTAP00000026650/1-655 RRRREMEDEQ LIQEYLVLKD QETIFKEQMR NLASREQNQK NAAYNLGVAE ENSTTRP00000011637/1-563 RKRREMEDEL LLQQYQMLKD QESVFKEQMQ SLASREQNQK NAAYNLGVAE bmy_19477T0/1-499 ---------- ---------- -------QMR SLASREQNQK NAAYNLGVAE BACU002278/1-545 RKRREVEDER LLQQYQMLKD QEALFKEQMR SLASREQNQK NAAYNLGVAE 401 450 ENSP00000415528/1-652 AIRNHKNEKP EFYKSFLFDK RPLSPALNAL KQEEYSRSLL KQMDNRQENE ENSBTAP00000026650/1-655 AIRIHKNEKP EFYKSFLFDK RPLSPEINAF KQEEYSQSLL KQMDHRREKD ENSTTRP00000011637/1-563 AIRIHKNEKP EFHKSFLFDK RPLSPEINAL KQEEYSQSLL KQMCHRREKD bmy_19477T0/1-499 AIRIHKNEKP EFYKSFLFDK RPLSPEINAF KQEEYSQSLL KQMGHRREKD BACU002278/1-545 AIRIHKNEKP EFYKSFLFDK RPLSPEINAF KQEEYSQSLL KQMGHRREKD 451 500 ENSP00000415528/1-652 IKQRQYRELM DRLEQVQLTE ELAAQRAKFL KDKMEETQCY KRALDAQIKN ENSBTAP00000026650/1-655 IKQRQNRELM DRLEQVQLTE ELAAQRAKYI KDKMEETQCY KRALDAQIKN ENSTTRP00000011637/1-563 IKQRQNREMM DRLEQVQLTE ELAAQRAKYI KDKMEETQCY KRALDAQIKN bmy_19477T0/1-499 IKQRQNRELM DRLEQVQLTE ELAAQRAKYI KDKMEETQCY KRALDAQIKN BACU002278/1-545 IMQRQNRELM DRLEQVQQTE ELAAQRAKYI KDKMEETQCY KRALDAQIKN 501 550 ENSP00000415528/1-652 KPSRLPPFEP DSSEPIFGKN EGELMVEKQK REQNYMKHQL EAAANHKRKA ENSBTAP00000026650/1-655 RCPQLPVFEP DSSKPIFGKN EGEMMVEKRK RDQNYMKHQM EAAANHKRRA ENSTTRP00000011637/1-563 KCPQLPMFEP DSSEPIFGKE EGEPMVEKRK REQNYMKHQM EAAANRKKTD bmy_19477T0/1-499 KRPQLPMFEP DSSEPIFGKE EGELMVEKRK REQNYMKHQQ EAAANHKRTA BACU002278/1-545 KRPQLPMFEP DSSEPIFGKE EGEPMVEKRK REQNYMRHQL EAAANHKRTA 551 600 ENSP00000415528/1-652 ILHQLVDQRR DLQMLQRTQR EHLADRTAEL ERVNRVNQCL QEDWERSAAM ENSBTAP00000026650/1-655 ILHQLVDQKR DLLMLQRTHQ EHLADRNAEL ERVNRINQSL QDDWERSAVM ENSTTRP00000011637/1-563 ILHQLVDQKW DLLMLQRTHK EHLADRNAEL ERVSRIYQDL QDDWERSAVL bmy_19477T0/1-499 VLHQLVDQKW DLLMLQRTHK E--------- ---------- ---------- BACU002278/1-545 ILHQLVDQKW DLLMLQRTHK EHLADRNAEL ERVSRIYQNL QDDWERSAVM 601 650 ENSP00000415528/1-652 KKQRDLEDKA FERASDKLFL LDQCEKYRRC KQCQRRTSNV GESNLWPLNK ENSBTAP00000026650/1-655 KKHRDLEEKA FERASDKLFL LDQCEKYRRC KQCQRRTSNR GESNLWPLNK ENSTTRP00000011637/1-563 KKQRDLEEKS FQRAPSKLFL LDQCEKYRRC KQCQRRPSNV GKSNVWPLNK bmy_19477T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU002278/1-545 KKQRDLEEKA FERASSKLFL LDQCEKYRRC KQCQRRPSNV GKSNLWPLNK 651 700 ENSP00000415528/1-652 FLPGSRLLV ENSBTAP00000026650/1-655 YMHGSRLFV ENSTTRP00000011637/1-563 YMQGSLLFV bmy_19477T0/1-499 --------- BACU002278/1-545 YMHGSRLFV