KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:48 2014 Check: 00 .. Name: ENSTTRP00000014427/1-975 Len: 1065 Check: 5611 Weight: 1.00 Name: ENSP00000237596/1-968 Len: 1065 Check: 8248 Weight: 1.00 Name: ENSBTAP00000026682/1-970 Len: 1065 Check: 2055 Weight: 1.00 Name: BACU010628/1-838 Len: 1065 Check: 9246 Weight: 1.00 Name: bmy_21355T0/1-870 Len: 1065 Check: 3114 Weight: 1.00 // 1 50 ENSTTRP00000014427/1-975 MVNSSRVQPQ QPGDAKRTPA PRAAGPGRLM AGGRAAGAGF AGPGGLREQR ENSP00000237596/1-968 MVNSSRVQPQ QPGDAKRPPA PRAPDPGRLM AGCAAVGASL AAPGGLCEQR ENSBTAP00000026682/1-970 MVNSSRVQPQ QPGDARRSPA PRAPGPGRLM AGGAIAGAGL AAPGGLREQR BACU010628/1-838 ---------- ---------- ---------- ---------- ---------- bmy_21355T0/1-870 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014427/1-975 GLEIEMERIR QAAARDPPAG ASASPSPPLS SCSRQAWSRD NPGFEAEEEE ENSP00000237596/1-968 GLEIEMQRIR QAAARDPPAG AAASPSPPLS SCSRQAWSRD NPGFEA--EE ENSBTAP00000026682/1-970 GLEIEMERIR QAAARDPPAG ASASPSPPLS SCSRQAWSRD NPGFEAEEEE BACU010628/1-838 ---------- --------MG CKISK----- -CSRQ----- ---------- bmy_21355T0/1-870 -----MERIR QAAARDPPAG ASASPSPPLS SCSRQAWSRD NPGFEAEEEE 101 150 ENSTTRP00000014427/1-975 EEEEVEGEEG GMVVEMDVEW RPGSRRSVAS SAVSSVCARG RGLGGYHGAG ENSP00000237596/1-968 EEEEVEGEEG GMVVEMDVEW RPGSRRSAAS SAVSSVGARS RGLGGYHGAG ENSBTAP00000026682/1-970 EEEEVEGEEG GMVVEMDVEW RPGSRRSASS SAVSSAGARG RGLGGYHGAG BACU010628/1-838 ---------- ---------- ---------- ---------G CGLS------ bmy_21355T0/1-870 EEEEVEGEEG GMVVEMDVEW RPGSRRSVAS SAVSSVGARG RGLGGYHGAG 151 200 ENSTTRP00000014427/1-975 PPNGRRRQRE DQGPPSPSPA GGGGGGDPLH RHLPLDGQLP RVAWAERLVR ENSP00000237596/1-968 HPSGRRRRRE DQGPPCPSPV ---GGGDPLH RHLPLEGQPP RVAWAERLVR ENSBTAP00000026682/1-970 HPSGRRRQRE DQGPPSPSPA ---GGGDPLH RHLPLDGQHP RVAWAERLVR BACU010628/1-838 ---------- ---------- ---------- ---------- ---------- bmy_21355T0/1-870 PPNGRRRQRE DQGPPSPSPA -GGGGGDPLH RHLPLDGQLP RVAWAERLVR 201 250 ENSTTRP00000014427/1-975 GLRG-LWGTR LMEESSADRE KHLKSVLREL ATYLL--FLI VLCIXXXXXX ENSP00000237596/1-968 GLRG-LWGTR LMEESSTNRE KYLKSVLREL VTYLL--FLI VLCI-LTYGM ENSBTAP00000026682/1-970 GLRG-LWGTR LMEESSTDRE KYLKSVLREL ATYLL--FLI VLCI-LTYGM BACU010628/1-838 ---------- ---------- --FECTTQEP T--------- -----VTYGM bmy_21355T0/1-870 GLRGSVFRTS ANSVLFPVPS TEFHCALME- TXYVLNSSFG SFCLPVTYGM 251 300 ENSTTRP00000014427/1-975 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000237596/1-968 MSSNVYYYTR MMSQLFLDTP VSKTEKTNFK TLSSMEDFWK FTEGSLLDGL ENSBTAP00000026682/1-970 MSSSVYYYTR IMSQLFLDTP VSKMEKTNFK TLSSMEDFWK FTEGALLDGL BACU010628/1-838 MSSSVYYYTR IMSQLFLDTP VSKTEKTNFK TLSSVEDFWK FAEGALLDGL bmy_21355T0/1-870 MSSSVYYYTR IMSQLFLDTP VSKMEKTNFK TLSSMEDFWK FAEGALLDGL 301 350 ENSTTRP00000014427/1-975 XXXXXXXXXX XGDDRSFIYY ENLLLGVPRI RQLRVRNGSC SIPLDLRDEI ENSP00000237596/1-968 YWKMQPSNQT EADNRSFIFY ENLLLGVPRI RQLRVRNGSC SIPQDLRDEI ENSBTAP00000026682/1-970 YWKTQPSNRT EADNRSFIYY ENLLLGVPRI RQLRVRNGSC SIPLDLRDEI BACU010628/1-838 YWKMQPGNRT EGDDRSFIYY ENLLLGVPRM RQLRVRNGSC SIPLDLRDEI bmy_21355T0/1-870 YWKMQPSNRT EGDDRSFIYY ENLLLGVPRI RQLRVRNGSC SIPLDLRDEI 351 400 ENSTTRP00000014427/1-975 KECYDVYSVS SEDRAPFGPR NGTAWIYTSE KDLNGSSHWG MIATYSGAGY ENSP00000237596/1-968 KECYDVYSVS SEDRAPFGPR NGTAWIYTSE KDLNGSSHWG IIATYSGAGY ENSBTAP00000026682/1-970 KECYDVYSVS SEDRAPFGPR NGTAWIYTSE KDLNGSSHWG MIATYSGAGY BACU010628/1-838 KECYDVYSVS SEDRAPFGPR NGTAWIYTSE KDLNGSSHWG MIATYSGAGY bmy_21355T0/1-870 KECYDVYSVS SEDRAPFGPR NGTAWIYTSE KDLNGSSHWG MIATYSGAGY 401 450 ENSTTRP00000014427/1-975 YLDLSRTREE TAAQIANLKK NGWLDRGTRA TFIDFSVYNA NINLFCVIRL ENSP00000237596/1-968 YLDLSRTREE TAAQVASLKK NVWLDRGTRA TFIDFSVYNA NINLFCVVRL ENSBTAP00000026682/1-970 YLDLSRTREE TAAQVANLKK NVWLDRGTRA IFIDFTVYNA NINLFCVIRL BACU010628/1-838 YLDLSRTREE TAAQVANLKK NVWLDRGTRA TFIDFSVYNA NINLFCVIRL bmy_21355T0/1-870 YLDLSRTREE TAAQVANLKK NFWLDRGTRA TFIDFSVYNA NINLFCVIRL 451 500 ENSTTRP00000014427/1-975 LVEFPATGGV IPSWRFQPVK LIRYVTTFDF FLAACEIIFC FFILYYVVEE ENSP00000237596/1-968 LVEFPATGGV IPSWQFQPLK LIRYVTTFDF FLAACEIIFC FFIFYYVVEE ENSBTAP00000026682/1-970 LIEFPATGGV IPSWQFQPVK LIRYVTTFDF FLAACEIIFC LFILYYVVEE BACU010628/1-838 LVEFPATGGV IPSWQFQPVK LIRYVTTFDF FLAACEIIFC FFILYYVVEE bmy_21355T0/1-870 LVEFPATGGV IPSWQFQPVK LIRYVTTFDF FLAACEIIFC FFILYYVVEE 501 550 ENSTTRP00000014427/1-975 ILEIRIHKLH YFRSFWNCLD VVIIV----- ---------- ---------- ENSP00000237596/1-968 ILEIRIHKLH YFRSFWNCLD VVIVV----- ---------- ---------- ENSBTAP00000026682/1-970 ILEIRIHKLH YFRSFWNCLD VVIIV----- ---------- ---------- BACU010628/1-838 ILEIRIHKLH YFRSFWNCLD VVIIVVGLRT TPNPLLCYKN VVEALLPSVF bmy_21355T0/1-870 ILEIRIHKLH YFRSFWNCLD VVIIV----- ---------- ---------- 551 600 ENSTTRP00000014427/1-975 ---------- ---------- ---------- ---------- ---------- ENSP00000237596/1-968 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026682/1-970 ---------- ---------- ---------- ---------- ---------- BACU010628/1-838 ADKTTVQTVC FYENKERLLA SYFSFETFSN PLEIGHAFRE AYVKESKFFC bmy_21355T0/1-870 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000014427/1-975 ---LSVVAAG INIHRTSNVE VLLQFLEDQS AFPNFENLAY WQIQFNNIAA ENSP00000237596/1-968 ---LSVVAIG INIYRTSNVE VLLQFLEDQN TFPNFEHLAY WQIQFNNIAA ENSBTAP00000026682/1-970 ---LSVVAIG INIYRTSNVE ALLQFLEDQN TFPNFENLAY WQTQFNNIAA BACU010628/1-838 RQELSVVAAG INIHRTSNVE VLLQFLEDQN AFPNFENLAY WQIQFNNIAA bmy_21355T0/1-870 ---LSVVAAG INIHRTSNVE VLLQFLEDQN AFPNFENLAY WQIQFNNIAA 651 700 ENSTTRP00000014427/1-975 VIVFFVWIKL FKFINFNRTM SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ ENSP00000237596/1-968 VTVFFVWIKL FKFINFNRTM SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ ENSBTAP00000026682/1-970 VIVFFVWIKL FKFINFNRTM SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ BACU010628/1-838 VIVFFVWIKL FKFINFNRTM SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ bmy_21355T0/1-870 VIVFFVWIK- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000014427/1-975 LAYLVFGTQV DDFSTFQECX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000237596/1-968 LAYLVFGTQV DDFSTFQECI FTQFRIILGD INFAEIEEAN RVLGPIYFTT ENSBTAP00000026682/1-970 LAYLVFGTQV DDFSTFQECI FTQFRIILGD INFAEIEEAN RVLGPIYFTT BACU010628/1-838 LAYLVFGTQV DDFSTFQECI FTQFRIILGD VNFAEIEEAN RVLGPIYFTT bmy_21355T0/1-870 ---------V DDFSTFQECI FTQFRIILGD VNFAEIEEAN RVLGPIYFTT 751 800 ENSTTRP00000014427/1-975 XXXXXXXXXX NMFLAIINDT YSEVKSDLAQ QKAEMELSDL VRKXXXXXXX ENSP00000237596/1-968 FVFFMFFILL NMFLAIINDT YSEVKSDLAQ QKAEMELSDL IRKGYHKALV ENSBTAP00000026682/1-970 FVFFMFFILL NMFLAIINDT YSEVKSDLAQ QKAEMELSDL IRKGYHKALI BACU010628/1-838 FVFFMFFILL NMFLAIINDT YSEVKSDLAQ QKAEMELSDL VRKGYHKALV bmy_21355T0/1-870 FVFFMFFILL NMFLAIINDT YSEVKSDLAQ QKAEMELSDL VRKGYHKALV 801 850 ENSTTRP00000014427/1-975 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSKGKGHTD AEIEAIFTKY ENSP00000237596/1-968 KLKLKKNTVD DISESLRQGG GKLNFDELRQ DL-KGKGHTD AEIEAIFTKY ENSBTAP00000026682/1-970 KLKLKKNTVD DISESLRQGG GKLNFDELRQ DL-KGKGHTD AEIEAIFTKY BACU010628/1-838 KLKLKKNTVD DISESLRQGG GKLNFDELRQ DL-KGKGHTD AEIEAIFTKY bmy_21355T0/1-870 KLKLKKNTVD DISESLRQGG GKLNFDELRQ DL-KGKGHTD AEIEAIFTKY 851 900 ENSTTRP00000014427/1-975 DQDGDQELTE REHQQMRDDL EKEREDLDLD HSSLPRPMSS RSFPRSLDDS ENSP00000237596/1-968 DQDGDQELTE HEHQQMRDDL EKEREDLDLD HSSLPRPMSS RSFPRSLDDS ENSBTAP00000026682/1-970 DQDGDQELTE HEHQQMRDDL EKEREDLDLD HSSLPRPMSS RSFPRSLDDS BACU010628/1-838 DQDGDQELTE HEHQQMRDDL EKEREDLDLD HSSLPRPMSS RSFPRSLDDS bmy_21355T0/1-870 DQDGDQELTE HEHQQMRDDL EKEREDLDLD HSSLPRPMSS RSFPRSLDDS 901 950 ENSTTRP00000014427/1-975 EEDDDEDSGH SSRRRGSISS GVSYEEFQVL VRRVDRMEHS IGSIVSKIDA ENSP00000237596/1-968 EEDDDEDSGH SSRRRGSISS GVSYEEFQVL VRRVDRMEHS IGSIVSKIDA ENSBTAP00000026682/1-970 EEEDDDDSGH SSRRRGSISS GVSYEEFQVL VRRVDRMEHS IGSIVSKIDA BACU010628/1-838 EEDDDEDSGH SSRRRGSISS GVSYEEFQVL VRRVDRMEHS IGSIVSKIDA bmy_21355T0/1-870 EEDDDEDSGH SSRRRGSISS GVSYEEFQVL VRRVDRMEHS IGSIVSKIDA 951 1000 ENSTTRP00000014427/1-975 VIVKLEIMER AKLKRREVLG RLLDGVAEDE RLGRDSEIHR EQMERLVREE ENSP00000237596/1-968 VIVKLEIMER AKLKRREVLG RLLDGVAEDE RLGRDSEIHR EQMERLVREE ENSBTAP00000026682/1-970 VIVKLEIMER AKLKRREVLG RLLDGVAEDE RLGRDNEIHR EQMERLVREE BACU010628/1-838 VIVKLEIMER AKLKRREVLG RLLDGVAEDE RLGRDSEIHR EQMERLVREE bmy_21355T0/1-870 VIVKLEIMER AKLKRREVLG RLLDGVAEDE RLGRDSEIHR EQMERLVREE 1001 1050 ENSTTRP00000014427/1-975 LERWESDDAA SQISHGVGTP VGLNGQP--- ------RPRS SRPSSSQSAE ENSP00000237596/1-968 LERWESDDAA SQISHGLGTP VGLNGQP--- ------RPRS SRPSSSQSTE ENSBTAP00000026682/1-970 LERWESDDAA SQISHGLGTP LGLNGQP--- ------RPRS SRPSSSQSTE BACU010628/1-838 LERWESDDAA SQISHGLGTP VGLNGHPGDH NAVRLVEPRR LYWSKIPQEI bmy_21355T0/1-870 LERWESDDAA SQISHGLGTP VGLNGQP--- ------RPRS SRPSSSQSTE 1051 1100 ENSTTRP00000014427/1-975 GMEGGGGNGS SNIHV ENSP00000237596/1-968 GMEGAGGNGS SNVHV ENSBTAP00000026682/1-970 GMEGGGGNGS ANIHV BACU010628/1-838 TMHTEITNH- ----- bmy_21355T0/1-870 GMEGGGGNGS SNIHV