KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:49 2014 Check: 00 .. Name: bmy_18447T0/1-264 Len: 532 Check: 4052 Weight: 1.00 Name: ENSTTRP00000015970/1-491 Len: 532 Check: 1095 Weight: 1.00 Name: BACU002327/1-530 Len: 532 Check: 5253 Weight: 1.00 Name: ENSP00000428924/1-512 Len: 532 Check: 7060 Weight: 1.00 Name: ENSBTAP00000026686/1-512 Len: 532 Check: 8197 Weight: 1.00 // 1 50 bmy_18447T0/1-264 -MG------- ---------C IKSKRKDNL- --KDDGIDLK TQPVRNTDRT ENSTTRP00000015970/1-491 TMG------- ---------C IKSKRKDNL- --KDDGIDLK TQPV------ BACU002327/1-530 -MGKQFSRLP YPSAGGGGLC VGSGLAACVA VSHHGCLEMP EEQVRVVAWL ENSP00000428924/1-512 -MG------- ---------C IKSKGKDSL- --SDDGVDLK TQPVRNTERT ENSBTAP00000026686/1-512 -MG------- ---------C IKSKRKDNL- --NDDGVDLK TQPVRNTDRT 51 100 bmy_18447T0/1-264 IYVRDPTSNK QQRPVADSQL LPGQRFQNKD PEEQGDIVVA LYPYDGIHPD ENSTTRP00000015970/1-491 ---------- -----ADSQL LPGQRFQNKD PEEQGDIVVA LYPYDGIHPD BACU002327/1-530 LVITLYHKLG GQEP-SYSST FSVLDAKPPD PEEQGDIVVA LYPYDGIHPD ENSP00000428924/1-512 IYVRDPTSNK QQRPVPESQL LPGQRFQTKD PEEQGDIVVA LYPYDGIHPD ENSBTAP00000026686/1-512 IYVRDPTSNK HQRPVADSQL LPGQRFQTKD PEEQGDIVIA LYPYDGIHPD 101 150 bmy_18447T0/1-264 DLSFKKGEKM KVLEEHGEWW KAKSLSTKRE GFIPSNYVAK VNTLETEEWF ENSTTRP00000015970/1-491 DLSFKKGEKM KVLEEHGEWW KAKSLSTKRE GFIPSNYVAK VNTLETEEWF BACU002327/1-530 DLSFKKGEKM KVLEEHGEWW KAKSLSTKRE GFIPSNYVAK VNTLETEEWF ENSP00000428924/1-512 DLSFKKGEKM KVLEEHGEWW KAKSLLTKKE GFIPSNYVAK LNTLETEEWF ENSBTAP00000026686/1-512 DLSFKKGEKM KVLEQHGEWW KAKSISTKKE GFIPSNYVAK VNTLETEEWF 151 200 bmy_18447T0/1-264 FKDITRKDAE RQLLAPGNSA GAFLIRESET LK-------- ---------- ENSTTRP00000015970/1-491 FKDITRKDAE RQLLAPGNSA GAFLIRESET LKGSYSLSVR DYDPVHGDVI BACU002327/1-530 FKDITRKDAE RQLLAPGNSA GAFLIRESET LKGSYSLSVR DYDPVHGDVI ENSP00000428924/1-512 FKDITRKDAE RQLLAPGNSA GAFLIRESET LKGSFSLSVR DFDPVHGDVI ENSBTAP00000026686/1-512 FKDITRKDAE RQLLAPGNSA GAFLIRESET LKGSYSLSVR DYDPVHGDVI 201 250 bmy_18447T0/1-264 ---------- ---------- ---------- --EQSDGLCR RLEKACISPK ENSTTRP00000015970/1-491 KHYKIRSLDN GGYYISPRIT FPCISDMIKH YQXXXXXXXX XXXXXXXXXX BACU002327/1-530 KHYKIRSLDN GGYYISPRIT FPCISDMIKH YQKQSDGLCR RLEKACISPK ENSP00000428924/1-512 KHYKIRSLDN GGYYISPRIT FPCISDMIKH YQKQADGLCR RLEKACISPK ENSBTAP00000026686/1-512 KHYKIRSLDN GGYYISPRIT FPCISDMIKH YQKQSDGLCR RLEKACISPK 251 300 bmy_18447T0/1-264 PQKPWDKDAW EIPRESIKLV KKLGAGQFGE VWMG------ --ECVALEP- ENSTTRP00000015970/1-491 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXYYNNST KVAVKTLKPG BACU002327/1-530 PQKPWDKDAW EIPRESIKLV KKLGAGQFGE VWMGYYNNST KVAVKTLKPG ENSP00000428924/1-512 PQKPWDKDAW EIPRESIKLV KRLGAGQFGE VWMGYYNNST KVAVKTLKPG ENSBTAP00000026686/1-512 PQKPWDKDAW EIPRESIKLV KRLGAGQFGE VWMGYYNNST KVAVKTLKPG 301 350 bmy_18447T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015970/1-491 TMSVQAFLEE ANLMKTLQHD KLVRLYAVVT KEEPIYIITE YMAKGSLLDF BACU002327/1-530 TMSVQAFLEE ANLMKTLQHD KLVRLYAVVT KEEPIYIITE YMAKGSLLDF ENSP00000428924/1-512 TMSVQAFLEE ANLMKTLQHD KLVRLYAVVT REEPIYIITE YMAKGSLLDF ENSBTAP00000026686/1-512 TMSVQAFLEE ANLMKTLQHD KLVRLYAVVT REEPIYIITE YMAKGSLLDF 351 400 bmy_18447T0/1-264 ---------- ---------- ---------- ---------- ------ESLL ENSTTRP00000015970/1-491 LKSDEGGKVL LPKLIDFSAQ IAEGMAYIER KNYIHRDLRA ANVLVSEALM BACU002327/1-530 LKSDEGGKVL LPKLIDFSAQ IAEGMAYIER KNYIHRDLRA ANVLVSESLM ENSP00000428924/1-512 LKSDEGGKVL LPKLIDFSAQ IAEGMAYIER KNYIHRDLRA ANVLVSESLM ENSBTAP00000026686/1-512 LKSDEGGKVL LPKLIDFSAQ IAEGMAYIER KNYIHRDLRA ANVLVSESLM 401 450 bmy_18447T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015970/1-491 CKIA-FGLAR VIEDNEYTAR EGAKFPIKWT APEAINFGCF TIKSDVWSFG BACU002327/1-530 CKIADFGLAR VIEDNEYTAR EGAKFPIKWT APEAINFGCF TIKSDVWSFG ENSP00000428924/1-512 CKIADFGLAR VIEDNEYTAR EGAKFPIKWT APEAINFGCF TIKSDVWSFG ENSBTAP00000026686/1-512 CKIADFGLAR VIEDNEYTAR EGAKFPIKWT APEAINFGCF TIKSDVWSFG 451 500 bmy_18447T0/1-264 ---------- -----GATAG EIR------- -------APA DFYQF----- ENSTTRP00000015970/1-491 ILLYEIVTYG KIPYPGRTNA DVMTALSQGY RMPRMENCPD ELYDIMKMCW BACU002327/1-530 ILLYEIVTYG KIPYPGRTNA DVMTALSQGY RMPRMENCPD ELYDIMKMCW ENSP00000428924/1-512 ILLYEIVTYG KIPYPGRTNA DVMTALSQGY RMPRVENCPD ELYDIMKMCW ENSBTAP00000026686/1-512 ILLYEIVTYG KIPYPGRTNA DVMTALSQGY RMPRMENCPD ELYDIMKMCW 501 550 bmy_18447T0/1-264 ---SQKHRSF CF------PL STCAKNQATQ PT ENSTTRP00000015970/1-491 KEKAEERPTF DYLQSVLDDF YTATEGQYQQ QP BACU002327/1-530 KEKAEERPTF DYLQSVLDDF YTATEGQYQQ QP ENSP00000428924/1-512 KEKAEERPTF DYLQSVLDDF YTATEGQYQQ QP ENSBTAP00000026686/1-512 KEKAEERPTF DYLQSVLDDF YTATEGQYQQ QP