KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:49 2014 Check: 00 .. Name: ENSTTRP00000006853/1-517 Len: 531 Check: 6789 Weight: 1.00 Name: BACU008570/1-388 Len: 531 Check: 9052 Weight: 1.00 Name: ENSP00000317300/1-524 Len: 531 Check: 9508 Weight: 1.00 Name: bmy_18101T0/1-520 Len: 531 Check: 3321 Weight: 1.00 Name: ENSBTAP00000026698/1-524 Len: 531 Check: 535 Weight: 1.00 // 1 50 ENSTTRP00000006853/1-517 MSQGSPGDWA PLYPTPGPPA PPNPFVHELH LSRLQRVKXX XXXXXXXXXX BACU008570/1-388 ---------- ---------- --------MY DQRLDGCRH- ---------- ENSP00000317300/1-524 MSQGSPGDWA PLDPTPGPPA SPNPFVHELH LSRLQRVKFC LLGALLAPIR bmy_18101T0/1-520 MSQGSPGDWA PLYPTPGPPA PPNPFVHELH LSRLQRVKFC LLGALLAPIR ENSBTAP00000026698/1-524 MSQGSPGDWA PLDPTPGPPA PPNPFVHELH LSRLQRVKFC LLGALLAPIR 51 100 ENSTTRP00000006853/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008570/1-388 ---------- ---------- -LAESSHQN- -----RQPC- ---------- ENSP00000317300/1-524 VLLAFIVLFL LWPFAWLQVA GLSEEQLQEP ITGWRKTVCH NGVLGLSRLL bmy_18101T0/1-520 VLLAFIVLFL LWPFAWLQVA GLTEEQLQEP ITGWRKTVCH NGVLGLSRLL ENSBTAP00000026698/1-524 VLLAFIVLFL LWPFAWLQVA GLTEEQLQEP ITGWRKTVCH HGVLGLSRLL 101 150 ENSTTRP00000006853/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008570/1-388 ---------R AQAGRGCREL LGTIRPPEGA SASSPRAMAS TQAGRKGGR- ENSP00000317300/1-524 FFLLGFLRIR VRGQRASRLQ APVLVAAPHS TFFDPIVLLP CDLPKVVSRA bmy_18101T0/1-520 FFLLGFLRIR VRGQRASRLQ APVLVAAPHS TFFDPIVLLP CDLPKVVSRA ENSBTAP00000026698/1-524 FFLLGFLRIR VRGQRASRLQ APVLVAAPHS TFFDPIVLLP CDLPKVVSRA 151 200 ENSTTRP00000006853/1-517 XXXXXXXXGA LLRFNQAILV SRHDPASRRR VVEEVRRRAT SGGKWPQVLF BACU008570/1-388 -----PPRGA LLRFNQAILV SRHDPASRRR VVEEVRRRAT SGGKWPQ--- ENSP00000317300/1-524 ENLSVPVIGA LLRFNQAILV SRHDPASRRR VVEEVRRRAT SGGKWPQVLF bmy_18101T0/1-520 ENLSVPVIGA LLRFNQAILV SRHDPASRRR VVEEVRRRAT SGGKWPQVLF ENSBTAP00000026698/1-524 ENLSVPVIGA LLRFNQAILV SRHDPASRRR VVEEVRRRAT SGGKWPQVLF 201 250 ENSTTRP00000006853/1-517 FPEGTCSNKK ALLKFKPGAF IAGVPVQPVL IRYPNSLDTT SWAWRGPGVL BACU008570/1-388 ---------- ---------- ---------- -------DTT SWAWRGPGVL ENSP00000317300/1-524 FPEGTCSNKK ALLKFKPGAF IAGVPVQPVL IRYPNSLDTT SWAWRGPGVL bmy_18101T0/1-520 FPEGTCSNKK ALLKFKPGAF IAGVPVQPVL IRYPNSLDTT SWAWRGPGVL ENSBTAP00000026698/1-524 FPEGTCSNKK ALLKFKPGAF IAGVPVQPVL IRYPNSLDTT SWAWRGPGVL 251 300 ENSTTRP00000006853/1-517 KVLWLTASQP CSIVDVEFLP VYRPSPEESR DPTLYANNVQ RVMAQALGIP BACU008570/1-388 KVLWLTASQP CSIVDVEFLP VYRPSPEESR DPTLYANNVQ RVMAQALGIP ENSP00000317300/1-524 KVLWLTASQP CSIVDVEFLP VYHPSPEESR DPTLYANNVQ RVMAQALGIP bmy_18101T0/1-520 KVLWLTASQP CSIVDVEFLP VYRPSPEESR DPTLYANNVQ RVMAQALGIP ENSBTAP00000026698/1-524 KVLWLTASQP CSIVDVEFLP VYRPSPEESR DPTLYANNVQ RVMAQALGIP 301 350 ENSTTRP00000006853/1-517 ATECEFVGSL PXXXXXXXXX XXXXXXXXXX XXXXXXXLSP GCVDTEAEPG BACU008570/1-388 ATECEFVGSL PVIVVGRLKV ALEPQLWELG RVLRKAGLSP GCVDTEAEPG ENSP00000317300/1-524 ATECEFVGSL PVIVVGRLKV ALEPQLWELG KVLRKAGLSA GYVDAGAEPG bmy_18101T0/1-520 ATECEFVGSL PVIVVGRLKV ALEPQLWELG RVLRKAGLSP GCVDTEAEPG ENSBTAP00000026698/1-524 ATECEFVESL PVIVVGRLKV ALEPQLWELG RVLRKAGLSP GCVDAGTEPG 351 400 ENSTTRP00000006853/1-517 RSRMISQEEF ARQLQLSDPQ MVAGAFSYFQ QDARGLVDFR DVALALAALD BACU008570/1-388 RSRMISQEEF ARQLQLSDPQ MVAGAFSYFQ QDARGLVDFR DVALALAALD ENSP00000317300/1-524 RSRMISQEEF ARQLQLSDPQ TVAGAFGYFQ QDTKGLVDFR DVALALAALD bmy_18101T0/1-520 RSRMISQEEF ARQLQLSDPQ MVAGAFSYFQ QDARGLVDFR DVALALAALD ENSBTAP00000026698/1-524 QSRRISQEEF AKQLQLSDSQ TVAGAFSYFQ QDADGLVDFR DVALALAALS 401 450 ENSTTRP00000006853/1-517 GGRSLEELTR LAFELFAEEQ AE-------G PGRLLYKDGF STILHLLLGS BACU008570/1-388 GGRSLEELTR LAFELFAEEK EEQAE----G PGRLLYKDGF STILHLLLGS ENSP00000317300/1-524 GGRSLEELTR LAFELFAEEQ AE-------G PNRLLYKDGF STILHLLLGS bmy_18101T0/1-520 GGRSLDELTR LAFELFAEEK EEQAE----G PGRLLYKDGF STILHLLLGS ENSBTAP00000026698/1-524 GGRSLEELTR LAFELFAEEP EEQAEEQAKG PGRLLYKDGF STILHLLLGS 451 500 ENSTTRP00000006853/1-517 PHPAARTLHA ELCQAGARQG LSLCEFQDFS VHHPLHGKLF GTYLRP---- BACU008570/1-388 PHPAARTLHA ELCQAGARQG LSLCEFQDFS VHHPLHGKLF GTYLRP---- ENSP00000317300/1-524 PHPAATALHA ELCQAGSSQG LSLCQFQNFS LHDPLYGKLF STYLRPPHTS bmy_18101T0/1-520 PHPAARTLHA ELCQAGARQG LSLCEFQDFS VHHPLHGKLF GTYLRP---- ENSBTAP00000026698/1-524 PRPAARTLHA ELCQAGARQG LSLCEFQDFS LHHPLHGKLF STYLRP---- 501 550 ENSTTRP00000006853/1-517 ---SQTPNAS SPDSVPALAN GAVQAPKQKG D BACU008570/1-388 ---SQAPNAS SPASAPALAN GTTQAPKQKG D ENSP00000317300/1-524 RGTSQTPNAS SPGNPTALAN GTVQAPKQKG D bmy_18101T0/1-520 ---SQAPNAS SPASAPALAN GAAQAPKQKG D ENSBTAP00000026698/1-524 ---SQTPPAS SPGSTTTLAN GTVQAPKQKG D