KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:50 2014 Check: 00 .. Name: ENSP00000289968/1-881 Len: 1178 Check: 8727 Weight: 1.00 Name: ENSTTRP00000014463/1-873 Len: 1178 Check: 4406 Weight: 1.00 Name: ENSBTAP00000026703/1-855 Len: 1178 Check: 6153 Weight: 1.00 Name: bmy_18217T0/1-1101 Len: 1178 Check: 8081 Weight: 1.00 Name: BACU011873/1-948 Len: 1178 Check: 6635 Weight: 1.00 // 1 50 ENSP00000289968/1-881 MKKQFNRMKQ LANQTVGRA- ---------- --------EK TEVLSED--- ENSTTRP00000014463/1-873 LKNQYKIN-- QAYQTVGRA- ---------- --------EK TEVLSED--- ENSBTAP00000026703/1-855 ---------- -------RA- ---------- --------EK TEVLSED--- bmy_18217T0/1-1101 MHKCISIHVG QAGVQIGSAC WELYCLEHGV QPDGQMPSDK TTGGGDDSFN BACU011873/1-948 MHKCISIHVG QAGVQIGSAC WELYCLEHGI PPDGQMPSDK TTGGGDDSFN 51 100 ENSP00000289968/1-881 ---------- ------LLQI ERR-LDTVRS -ICHH-SHKR LVACFQGQHG ENSTTRP00000014463/1-873 ---------- ------LLQI ERR-LDTVRS -MCHH-SHKR LVACFQGQHG ENSBTAP00000026703/1-855 ---------- ------LLQI ERR-LDTVRS -MCHH-SHKR LMACFQGQHG bmy_18217T0/1-1101 TFFSETGASK HVPRAVFVDL EPMVIEGVRT GTCRQLYHPE QLVTGKEDAA BACU011873/1-948 TFFSETGAGK HVPRAVFVDL EPTVIDGVRT GTCRQLFHPE QLVTGKEDAA 101 150 ENSP00000289968/1-881 TDAERRHKKL ------PLTA LAQNMQEAST QLEDSLL--- ---------- ENSTTRP00000014463/1-873 TDAERRHKKL ------PVTA LAQNMQEAST QLEDSLL--- ---------- ENSBTAP00000026703/1-855 TDAERRHKKL ------PLTA LAQNMLEAST QLEDSLL--- ---------- bmy_18217T0/1-1101 NNYARGHYTI GKEIIDPVLD RIRKLADQCT GLQGSLVFHS FGGGTGSGFT BACU011873/1-948 INHARSHYPT GKEIIDLVLD RVRKLADQCT RLQGFLVFHS FGGGTGSGFT 151 200 ENSP00000289968/1-881 GKMLETCG-D AENQLALELS QHEV-FVEKE IVDPLYGIAE VEIPNIQKQR ENSTTRP00000014463/1-873 GKMLETCG-D AENQLALELS QHEV-FVEKE IVDPLYGIAE VEIPNIQKQR ENSBTAP00000026703/1-855 GKMLETCG-D AENQLALELS QHEV-FVEKE IVDPLYGIAE VEIPNIQKQR bmy_18217T0/1-1101 SLLMERLSVD YGKKSKLEFS IYPAPQVSTA VVEPYNSILT AHTTLEHSDC BACU011873/1-948 SLLMERLSVD YGKKSKLEFS IYPAPQVSTA VVEPYNSILT AHTTLEHSDC 201 250 ENSP00000289968/1-881 KQLA------ ---------- --------RL V--------- ---------- ENSTTRP00000014463/1-873 KQLA------ ---------- --------RL V--------- ---------- ENSBTAP00000026703/1-855 KQLA------ ---------- --------KL V--------- ---------- bmy_18217T0/1-1101 AFMVDNEAIC DICRRNLDIE RPTYANLNRL ISQRVSSITA SLRFDGALNV BACU011873/1-948 AFMI------ ---------- --------VF T--------- ---------- 251 300 ENSP00000289968/1-881 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014463/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026703/1-855 ---------- ---------- ---------- ---------- ---------- bmy_18217T0/1-1101 DLTEFQTNLV PCPHIHCPLA TYAPVISAEK AYHEQLSVAE ITSACFEPAN BACU011873/1-948 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000289968/1-881 ---------- ---------- ---------- ---------- ---LDW---- ENSTTRP00000014463/1-873 ---------- ---------- ---------- ---------- ---LDW---- ENSBTAP00000026703/1-855 ---------- ---------- ---------- ---------- ---LDW---- bmy_18217T0/1-1101 QMVKCDPRHG KYMACCLLYH GDVVPKDVNA AIATVKTKRS IQFVDWCPTG BACU011873/1-948 ---------- ---------- ---------- ---------- ---FNC---- 351 400 ENSP00000289968/1-881 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014463/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026703/1-855 ---------- ---------- ---------- ---------- ---------- bmy_18217T0/1-1101 FKVGTNYQPP TGGDLAKVQQ AVCMLSNTTA IAEAWARLDH KFDLMYAKHA BACU011873/1-948 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000289968/1-881 ----DSVR-- --ARWNQAHK SSGTNFQGLP SKIDTLKEEM DEAGNKVEQC ENSTTRP00000014463/1-873 ----DSVR-- --ARWNQAHK SSATNFQGLP SKIDTLKEEM DEAGNKVEQC ENSBTAP00000026703/1-855 ----DSVR-- --ARWNQAHK SSGTNFQGLP SKIDTLKEEM DEAGNKVEQC bmy_18217T0/1-1101 FADSQIMAMP VLCRWNQAHK SSGTNFQGLP SKIDTLKEEM DEAGNKVEQC BACU011873/1-948 ----DHVLLF HVYLWNQAHK SSGTNFQGLP SKIDTLKEEM DEAGNKVEQC 451 500 ENSP00000289968/1-881 KDQLAADMYN FMAKEGEYGK FFVTLLEAQA DYHRKALAVL EKTLPEMRAH ENSTTRP00000014463/1-873 KDQLAADMYN FMAKEGEYGK FFVTLLEAQA DYHRKALAVL EKALPELRAH ENSBTAP00000026703/1-855 KDQLAADMYN FMAKEGEYSK FFITLLEAQA DYHRKALAVL EKALPELRAH bmy_18217T0/1-1101 KDQLAADMYN FMAKEGEYGK FFVTLLEAQA DYHRKALAVL EKALPELRAH BACU011873/1-948 KDQLAADMYN FMAKEGEYGK FFVTLLEAQA DYHRKALAVL EKALPELRAH 501 550 ENSP00000289968/1-881 QDKWAEKPAF GTPLEEHLKR SGREIALPIE ACVMLLLETG MKEEGLFRIG ENSTTRP00000014463/1-873 QDKWAEKPAF GTPLEEHLKR SGREIALPLE ACVMLLLETG MKEEGLFRIG ENSBTAP00000026703/1-855 QDKWAEKPAF GTPLEEHLKR SGREIALPIE ACVMLLLETG MKEEGLFRIG bmy_18217T0/1-1101 QDKWAEKPAF GTPLEEHLKR SGREIALPLE ACVMLLLETG MKEEGLFRIG BACU011873/1-948 QDKWAEKPAF GTPLEEHLKR SGREIALPLE ACVMLLLETG MKEEGLFRIG 551 600 ENSP00000289968/1-881 AGASKLKKLK AALDCSTSHL DEFYSDPHAV AGALKSYLRE LPEPLMTFNL ENSTTRP00000014463/1-873 AGASKLKKLK AALDCSTSHL DEFYSDPHAV AGALKSYLRE LPEPLMTFNL ENSBTAP00000026703/1-855 AGASKLKKLK AALDCSTSHL DEFYSDPHAV AGALKSYLRE LPEPLMTFNL bmy_18217T0/1-1101 AGASKLKKLK AALDCSTSHL DEFYSDPHAV AGALKSYLRE LPEPLMTFNL BACU011873/1-948 AGASKLKKLK AALDCSTSHL DEFYSDPHAV AGALKSYLRE LPEPLMTFNL 601 650 ENSP00000289968/1-881 YEEWTQVASV QDQDKKLQDL WRTCQKLPPQ NFVNFRYLIK FLAKLAQTSD ENSTTRP00000014463/1-873 YEEWTQVASV QDQDKKLQDL WRTCQKLPPQ NFVNFRYLIK FLAKLAQTSD ENSBTAP00000026703/1-855 YEEWTQVASV QDQDKKLQDL WRTCQKLPPQ NFVNFRYLIK FLAKLAQTSD bmy_18217T0/1-1101 YEEWTQVA-- ---------- ---------- -----RYLIK FLAKLAQTSD BACU011873/1-948 YEEWTQVA-- ---------- ---------- -----RYLIK FLAKLAQTSD 651 700 ENSP00000289968/1-881 VNKMTPSNIA IVLGPNLLWA RNEGTLAEMA AATSVHVVAV IEPIIQHADW ENSTTRP00000014463/1-873 INKMTPSNIA IVLGPNLLWA KNEGTLAEMA AATSVHVVAV IEPIIQHANW ENSBTAP00000026703/1-855 INKMTPSNIA IVLGPNLLWA KNEGTLAEMA AATSVHVVAV IEPIIQHANW bmy_18217T0/1-1101 INKMTPSNIA IVLGPNLLWA KNEGTLAEMA AATSVHVVAV IEPIIQHANW BACU011873/1-948 VNKMTPSNIA IVLGPNLLWA KNEGTLAEMA AATSVHVVAV IEPIIQHANW 701 750 ENSP00000289968/1-881 FFPE-EVEFN VSEAFVPLTT PSSNHSFHTG NDS-DSGTLE RKRPASMAVM ENSTTRP00000014463/1-873 FFPE-EVEFN VSEAFVPLTT PNSNHSSHTG NDPADSGTLE RKRPASMAVM ENSBTAP00000026703/1-855 FFPEAEVEFN VSEAFVPLTT PNSNHSSHTG NDPVDSGTLE RKRPASMAVM bmy_18217T0/1-1101 FFPE-EVEFN VSEAFVPLTT PNSNHSSHTG NDSVDSGTLE RKRPASMAVM BACU011873/1-948 FFPE-EVEFN VSEAFVPLTT PNSNHSSHTG NDSADSGTLE RKRPASMAVM 751 800 ENSP00000289968/1-881 EGDLVKKESF GVKLMDFQAH RRGGTLNRKH ISPAFQPPLP PTDGSTVVPA ENSTTRP00000014463/1-873 EGDLVKKESF GVKLMDFQAH RRGGTLNRKH ISPAFQPPLP PTDGSTLAPA ENSBTAP00000026703/1-855 EGDLVKKESF GVKLMDFQAH RRGGTLNRKH VSPAFQPPLP PTDGSTLAPA bmy_18217T0/1-1101 EGDLVKKESF GVKLMDFQAH RRGGTLNRKH ICPAFHPPLP PTDGSTLAPA BACU011873/1-948 EGDLVKKESF GVKLMDFQAH RRGGTLNRKH ICPASPPPLP PTDGSTLAPA 801 850 ENSP00000289968/1-881 GPEPPPQSSR AESSSGGGTV PSSAGILEQG PSPGDGSPPK PKDPVSAAVP ENSTTRP00000014463/1-873 GPEPPPQSSR AESSTGGGTV PSSAGMLEQG PSPGDSSPPK PKDP--AAAP ENSBTAP00000026703/1-855 GPEPPPQSSR AESSTGGGTG PSSAGILEQG PSPGDSSPPK PKDS--VAAP bmy_18217T0/1-1101 GPEPPPQSSR AENSTGGGTV PSSAGILEQG PSPGDSSPPK PKDP--AAAP BACU011873/1-948 GPEPPPQSSR AESSTGGGTV PSSAGILEQG PSPGDSSPPK PKDP--AAAP 851 900 ENSP00000289968/1-881 APGRNNSQIA SGQNQPQAAA GSHQLSMGQP HNAAGPSPHT LRRAVKKPAP ENSTTRP00000014463/1-873 APGRNSSQAA PGQSQAQATA GSHQLSVGPT HNSAGPSPHT VRRAVKKPAP ENSBTAP00000026703/1-855 APGRNSSQAA PGPSQAQAAA GSHQLSVGPA HNSAGPSPHT VRRAVKKPAP bmy_18217T0/1-1101 APGRNSSQAA PGQSQAQATA GSHQLAVGPT HNSASPSPHT VRR------- BACU011873/1-948 APGRNSSQVA PGQSQAQATA GSHQLAVGPT HNSAGPSPHT VRRAVKKPAP 901 950 ENSP00000289968/1-881 APPKPGNPPP GHPGGQSSSG TSQHPPSLSP KPPTRSPSPP TQHTGQPPGQ ENSTTRP00000014463/1-873 APPKPGNPPP GHPGGQSSPG ASQHPPSLSP KPSTRSPSPP TQPPGQAPGQ ENSBTAP00000026703/1-855 APPKPGNPPP GHPGGQSSPG TSQHPPSLSP KPSTRSPSPP TQPPGQAPGQ bmy_18217T0/1-1101 APPKPGNPPP GHPGGQSSPG TSQHPPSLSP KPSTRSPSPP TQPPGQAPGQ BACU011873/1-948 APPKPGNPPP GHPGGQSSPG TSQHPPSLSP KPSTRSPSPP TQPPGQASGQ 951 1000 ENSP00000289968/1-881 PSAPSQLSAP RRYSSSL--- ---------- ---------- ---------- ENSTTRP00000014463/1-873 PCATSQLSAP RRYSSSL--- ---------- ---------- ---------- ENSBTAP00000026703/1-855 PCATSQLSAP RRYSSSL--- ---------- ---------- ---------- bmy_18217T0/1-1101 PCATSQLSAP RRYSSSL--- ---------- ---------- ---------- BACU011873/1-948 PCTTSQLSAP RRYSSSLSPX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAP 1001 1050 ENSP00000289968/1-881 -SPIQAPNHP PPQPPTQATP L-MHTKPNSQ GPPNPMALPS EHGLEQPSHT ENSTTRP00000014463/1-873 -PPIQAPNHP PPQPPTQATP PPALTKPGSQ GPPAPGALPG EPGLEQSSHT ENSBTAP00000026703/1-855 -PPIQAPNHP PPQPPTQAAS PSALTKPGSQ GPPAPG---- EPGLEQSSHT bmy_18217T0/1-1101 -SPIQAPNHP PPQPPTQATP PPALAKPGSQ GPPAPGAPPG EPGLEQSSHT BACU011873/1-948 RPPPQPPTPP PPQPPTQATP LPALAKPGSQ GPPAPGAPPS EPGLEQSPHT 1051 1100 ENSP00000289968/1-881 PPQTPTPPST PPLGKQNPSL PAPQTLAGGN PETAQPHAGT LPRPRPVPKP ENSTTRP00000014463/1-873 PPQTPTPPST PPLGKQNPGQ VVS------N PETAQPHAGT LPRPRPVPKP ENSBTAP00000026703/1-855 PPQTPTPPST PPLGKQNPGQ AVS------N PETAQPHAGT LPRPRPVPKP bmy_18217T0/1-1101 PPQTPTPPST PPLGKQNPGQ VVS------N PETAQPHAGT LPRPRPVPKP BACU011873/1-948 PPQTPTPPST PPLGKQNPSQ VVS------N PETAQPHAGT LPRPRPVPKP 1101 1150 ENSP00000289968/1-881 RNRPSVPPPP QPPGVHSAGD SSLTNTAPTA SKIVTDSNSR VSEPHRSIFP ENSTTRP00000014463/1-873 RNRPSVPPPP HPPGAHPAGD GSLSIAAPTS SKIVTDANSR VSEPLRSIFP ENSBTAP00000026703/1-855 RNRPNVPPPP HPPGAHAAGD GNLSIAAPTA SKIVTDANSR VSEPLRSIFP bmy_18217T0/1-1101 RNRPSVPPPP HPPGAHPAGD GSLSIAAPTS SKIVTDANSR VSEPLRSIFP BACU011873/1-948 RNRPSVPPPP HPPGAHPAGD GSLNIAAPTS SKIVTDANSR VSEPLRSIFP 1151 1200 ENSP00000289968/1-881 EMHSDSASKD VPGRILLDID NDTESTAL ENSTTRP00000014463/1-873 ETHSDSASKD LPGRILLDMD NDTESTAL ENSBTAP00000026703/1-855 EMHSDSASKD LPGRILLDMD NDTESTAL bmy_18217T0/1-1101 ETHSDSASKD LPGRILLDMD NDTESTAL BACU011873/1-948 ETHSDSASKD LPGRILLDMD NDTESTAL