KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:02 2014 Check: 00 .. Name: ENSTTRP00000002047/1-730 Len: 834 Check: 8550 Weight: 1.00 Name: ENSP00000200135/1-779 Len: 834 Check: 585 Weight: 1.00 Name: ENSBTAP00000026733/1-779 Len: 834 Check: 5681 Weight: 1.00 Name: bmy_22555T0/1-834 Len: 834 Check: 5645 Weight: 1.00 Name: BACU004007/1-779 Len: 834 Check: 7734 Weight: 1.00 // 1 50 ENSTTRP00000002047/1-730 ---------- ---------- ---------- ---------- ---------- ENSP00000200135/1-779 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026733/1-779 ---------- ---------- ---------- ---------- ---------- bmy_22555T0/1-834 MPTGSCSTGL AFRAEVWAPR DSVSRQAARQ GLRRDWSCRA GYKRVTLSGL BACU004007/1-779 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002047/1-730 -----MASFV TEVLAHSGRL EKEDLCTRIS RLTQRVEEIK GEVCSMISKK ENSP00000200135/1-779 -----MASFV TEVLAHSGRL EKEDLGTRIS RLTRRVEEIK GEVCNMISKK ENSBTAP00000026733/1-779 -----MASFV TEVLAHSGRL EKEDLGTRIS RLTQRVEEIK GEVCSMISKK bmy_22555T0/1-834 VLVVAMASFV TEVLAHSGRL EKEDLCTRIS RLTQRVEEIK GEVCSMISKK BACU004007/1-779 -----MASFV TEVLAHSGRL EKEDLCTRIS RLTQRVEEIK GEVCSMISKK 101 150 ENSTTRP00000002047/1-730 YSEFLPSMQS AQDLVTQVDK LSDDIDLLKS RIESEVRRDL HVSTAEFTDL ENSP00000200135/1-779 YSEFLPSMQS AQGLITQVDK LSEDIDLLKS RIESEVRRDL HVSTGEFTDL ENSBTAP00000026733/1-779 YSEFLPSMQS AQDLVTQVDK LSDDIGLLKS RIETEVRRDL HVSTAEFTDL bmy_22555T0/1-834 YSEFLPSMQS AQDLVTQVDK LSDDIDLLKS RIESEVRRDL HVSTAEFTDL BACU004007/1-779 YSEFLPSMQS AHDLVTQVDK LSDDIDLLKS RIESEVRRDL HVSTAEFTDL 151 200 ENSTTRP00000002047/1-730 KQQLERDSVV LSLLRQLHEF STAIEEYNCA LAEKRY---- -----AQICL ENSP00000200135/1-779 KQQLERDSVV LSLLKQLQEF STAIEEYNCA LTEKKYVTGA QRLEEAQKCL ENSBTAP00000026733/1-779 KQQLERDSVV LCLLRQLQEF STAIEEYNCA LAGKKYISAA QHLEEAQKCL bmy_22555T0/1-834 KQQLERDSVV LSLLRQLHEF STAIEEYNCA LAEKKYVTAA QRLEEAQICL BACU004007/1-779 KQQLERDSVV LSLLRQLHEF STAIEEYNCA LAEKKYVTAA QRLEEAQICL 201 250 ENSTTRP00000002047/1-730 KLLKSRKCFD LKILKSLSME LTIQKQNILY HLGEEWQKLI VWKFPPSKDT ENSP00000200135/1-779 KLLKSRKCFD LKILKSLSME LTIQKQNILY HLGEEWQKLI VWKFPPSKDT ENSBTAP00000026733/1-779 KLLKSRKCFD LKILKSLSME LTIQKQNILY HLGEEWQKLI VWKFPPSKDI bmy_22555T0/1-834 KLLKSRKCFD LKILKSLSME LTIQKQNILY HLGEEWQKLI VWKFPPSKDI BACU004007/1-779 KLLKSRKCFD LKILKSLSME LTIQKQNILY HLGEEWQKLI GWKFPPSKDI 251 300 ENSTTRP00000002047/1-730 SNLESCLQTE LHLCTEPSQK EEKTPVPPIS CVLLAFSLLG ELHTKLKSFX ENSP00000200135/1-779 SSLESYLQTE LHLYTEQSHK EEKTPMPPIS SVLLAFSVLG ELHSKLKSFG ENSBTAP00000026733/1-779 SNLESCLQTE LHLCTEQSQK EEKNPVPPIS SVLLAFSLLG ELHTKLKSFG bmy_22555T0/1-834 SNLESCLQTE LHLCTEQSQK EEKTPGPPIS SVLLAFSLLG ELHTKLKSFG BACU004007/1-779 SNLESCLQTE LHLCTEQSQK EEKTPGPSIS SVLLAFSLLG ELHTKLKSFG 301 350 ENSTTRP00000002047/1-730 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000200135/1-779 QMLLKYILRP LASCPSLHAV IESQPNIVII RFESIMTNLE YPSPSEVFTK ENSBTAP00000026733/1-779 QMLLKYILKP LASCPSLLAM IESQPNITII RFESVMTDLE HPSPSEVFAK bmy_22555T0/1-834 QMLLKYILRP LASCPSLFAV IESQPNIIII RFESVMTDLE HPSPSEVFAK BACU004007/1-779 QMLLKYILRP LASCPSLFAV IESQPNIIII RFESVMTDLE HPSPSEVFAK 351 400 ENSTTRP00000002047/1-730 XXXXXXXXXX XXXXLPLVAD VENEKTCKIV LAEMLGDMIW EDLSDCLIKN ENSP00000200135/1-779 IRLVLEVLQK QLLDLPLDTD LENEKTSTVP LAEMLGDMIW EDLSECLIKN ENSBTAP00000026733/1-779 IRLVLEVVQK QLLDLPLDAD LENLKTSKIT LAEMLGDIIW EDLSECLIKD bmy_22555T0/1-834 IRLVLEVVQK QLLDLPLDAD IENEKTSKII LAEMLGDMIW EDLSECLIKN BACU004007/1-779 IRLVLEVVQK QLLDLPLDAD VENEKTSKII LAEMLGDVIW EDLSECLIKN 401 450 ENSTTRP00000002047/1-730 CLVYSIPTNS SKLQQYEEII QSTEEFENAL KEMRFLKGNT TDLLKYARNI ENSP00000200135/1-779 CLVYSIPTNS SKLQQYEEII QSTEEFENAL KEMRFLKGDT TDLLKYARNI ENSBTAP00000026733/1-779 CLVYSIPTNS SKLQQYEEII QSTEEFENAL KEMRFLKGDT TDLLKYARNI bmy_22555T0/1-834 CLVYSIPTNS SKLQQYEEII QSTEEFENAL KEMSFLKGNT TDLLKYARNI BACU004007/1-779 CLVYSIPTNS SKLQQYEEII QSTEEFENAL KEMSFLKGNT TDLLIYARNI 451 500 ENSTTRP00000002047/1-730 NSHFANKKCQ DVIVAARNLM TSEIHNTVKI TPASKISVPD LPSPAEGDKL ENSP00000200135/1-779 NSHFANKKCQ DVIVAARNLM TSEIHNTVKI IPDSKINVPE LPTPDEDNKL ENSBTAP00000026733/1-779 NSHFANKKCQ DVIVAARNLM TSEIHNTVKI TPASQISVPD LLRPNEDDKL bmy_22555T0/1-834 NSHFANKKCQ DVIVTARNLM TSEIHNTVKI TPASKISVPD LPSPAEDDKL BACU004007/1-779 NSHFANKKCQ DVIVAARNLM TSEIHNTVKI TPASKISVPD LPSPAEDDKL 501 550 ENSTTRP00000002047/1-730 QVQKVSTTQY NEAMNLEPEN TLDQHSFSLP TCRISESVKK LMELAYQTLL ENSP00000200135/1-779 EVQKVSNTQY HEVMNLEPEN TLDQHSFSLP TCRISESVKK LMELAYQTLL ENSBTAP00000026733/1-779 QVQEVSTAQC NEVANLEPEN TLDQHSFSLP TCRISESVKK LMELAYQTLL bmy_22555T0/1-834 QVQKVSTTQY NEVMNLEPEN TLDQHSFSLP TCRISESVKK LMELAYQTLL BACU004007/1-779 QVQKVSTTQY NEVMSLEPEN TLDQHSFSLP TCRISESVKK LMELAYQTLL 551 600 ENSTTRP00000002047/1-730 EATTSSDQCA VQLFYSVRNI FHLFHDVVPT YHKENLQKLP QLAAIHLNNC ENSP00000200135/1-779 EATTSSDQCA VQLFYSVRNI FHLFHDVVPT YHKENLQKLP QLAAIHHNNC ENSBTAP00000026733/1-779 EATTSSDQCA VQLFYSVRNI FHLFHDVVPT YHKENLQKLP QLAAIHHNNC bmy_22555T0/1-834 EATTSSDQCA VQLFYSVRNI FHLFHDVVPT YHKENLQKLP QLAAIHHNNC BACU004007/1-779 EATTSSDQCA VQLFYSVRNI FHLFHDVVPT YHKENLQKLP QLAAIHHNNC 601 650 ENSTTRP00000002047/1-730 MYIAHHLLTL GHQFRLRLAP ILCDGTTTFV DLVPGFRRLG TECFLAQMRA ENSP00000200135/1-779 MYIAHHLLTL GHQFRLRLAP ILCDGTATFV DLVPGFRRLG TECFLAQMRA ENSBTAP00000026733/1-779 MYIAHHLLTL GHQFRLRLAP ILCDGTTTFV DLVPGFRRLG TECFLAQMRA bmy_22555T0/1-834 MYIAHHLLTL GHQFRLRLAP ILCDGTTTFV DLVPGFRRLG TECFLAQMRA BACU004007/1-779 MYIAHHLLTL GHQFRLRLAP ILCDGTTTFV DLVPGFRRLG TECFLAQMRA 651 700 ENSTTRP00000002047/1-730 QKGELLERLS SARNFSNMDD EDNYSAASKA VRQVLHQLKR LGIVWQDVLP ENSP00000200135/1-779 QKGELLERLS SARNFSNMDD EENYSAASKA VRQVLHQLKR LGIVWQDVLP ENSBTAP00000026733/1-779 QKGELLERLS SARNFSNMDD EDNYSAASKA VRQVLHQLKR LGVVWQDVLP bmy_22555T0/1-834 QKGELLERLS SARNFSNMDD EDNYSAASKA VRQVLHQLKR LGIVWQDVLP BACU004007/1-779 QKGELLERLS SARNFSNMDD EDNYSAASKA VRQVLHQLKR LGIVWQDVLP 701 750 ENSTTRP00000002047/1-730 VNIYCKAMGT LLSTTISEII GRITALEDIS TEDGDRLYSL CKTVMDEGPQ ENSP00000200135/1-779 VNIYCKAMGT LLNTAISEVI GKITALEDIS TEDGDRLYSL CKTVMDEGPQ ENSBTAP00000026733/1-779 VNIYCKAMGT LLNTAVSEII GRITALEDIS TEDADRLYSL CKTVVDEGPQ bmy_22555T0/1-834 VNIYCKAMGT LLSTTISEII GRITALEDIS TEDGDRLYSL CKTVMDEGPQ BACU004007/1-779 VNIYCKAMGT LLSTTISEII GRITALEDIS TEDGDRLYSL CKTVMDEGPQ 751 800 ENSTTRP00000002047/1-730 VFAPLSEENK NKKYQEEVPV YVPKWMPFKE LMIMLQASLQ EIGD------ ENSP00000200135/1-779 VFAPLSEESK NKKYQEEVPV YVPKWMPFKE LMMMLQASLQ EIGDRWADGK ENSBTAP00000026733/1-779 VFAPLSEENE NKKYREEVPV YVSKWMPFKE LMMMLQASLQ EIGDRWADGK bmy_22555T0/1-834 VFAPLSEENK NKKYQEEVPV YVPKWMPFKE LMIMLQASLQ EIGDRWADGK BACU004007/1-779 VFAPLSEENK NKKYQEEVPV YVPKWMPFKE LMIMLQASLQ EIGDRWADGK 801 850 ENSTTRP00000002047/1-730 ---------- ---------- ---------- ---- ENSP00000200135/1-779 GPLAAAFSSS EVKALIRALF QNTERRAAAL AKIK ENSBTAP00000026733/1-779 GPLATAFSSS EVKALIRALF QNTERRAATL AKIK bmy_22555T0/1-834 GPLAAAFSSS EVKALIRALF QNTERRAAAL AKIK BACU004007/1-779 GPLAAAFSSS EVKALIRALF QNTERRAAAL AKIK