KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:04 2014 Check: 00 .. Name: bmy_15342T0/1-727 Len: 1103 Check: 1220 Weight: 1.00 Name: ENSTTRP00000015021/1-1068 Len: 1103 Check: 2912 Weight: 1.00 Name: ENSP00000376333/1-1020 Len: 1103 Check: 3830 Weight: 1.00 Name: BACU011517/1-1062 Len: 1103 Check: 9674 Weight: 1.00 Name: ENSBTAP00000026738/1-1018 Len: 1103 Check: 3665 Weight: 1.00 // 1 50 bmy_15342T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015021/1-1068 APKVSRKETA AQHPVGRGGA SGAGRRRRGT RRPRTGAGLE FQGGCASKMR ENSP00000376333/1-1020 ---------- ---------- ---------- ---------- --------MR BACU011517/1-1062 ---------- ---------- ---------- ---------M DRGPVRSKMR ENSBTAP00000026738/1-1018 ---------- ---------- ---------- ---------- --------MR 51 100 bmy_15342T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015021/1-1068 RFLRPGHDPA RERLKRDLFQ FNKTVEHGFP HQPSALGYSP SLRILAIGTR ENSP00000376333/1-1020 RFLRPGHDPV RERLKRDLFQ FNKTVEHGFP HQPSALGYSP SLRILAIGTR BACU011517/1-1062 RFLRPGHDPA RERLKRDLFQ FNKTVEHGFP HQPSALGYSP SLRILAIGTR ENSBTAP00000026738/1-1018 RFLRPGHDPA RERLKRDLFQ FNKTVEHGFP HQPSALGYSP SLRILAIGTR 101 150 bmy_15342T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015021/1-1068 SGAIKL---- ---------- --------YG APGVEFMGLH RENNAVVQIH ENSP00000376333/1-1020 SGAIKL---- ---------- --------YG APGVEFMGLH QENNAVTQIH BACU011517/1-1062 SGAVKLYPFR SPSSHPGMPW KGQGPWHCYG APGVEFMGLH RENNSVVQIH ENSBTAP00000026738/1-1018 SGAVKL---- ---------- --------YG APGVEFMGLH RENNTVVQIH 151 200 bmy_15342T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015021/1-1068 FVPGQCQLVT LLDDNSLHLW SLKVKSGVSE LQEDESFTLR GPPGAAPSAT ENSP00000376333/1-1020 LLPGQCQLVT LLDDNSLHLW SLKVKGGASE LQEDESFTLR GPPGAAPSAT BACU011517/1-1062 FLPGQCQLVT LLDDNSLHLW SLKVKGGVSE LQEDESFTLR GPPGAAPSAT ENSBTAP00000026738/1-1018 FLPGQCQLVT LLDDNSLHLW SLKVKGGVSE LQEDETFTLR GPPGAAPSAT 201 250 bmy_15342T0/1-727 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015021/1-1068 QITVVLPHSS CQLLYLGTES GSVFMVQLPA FRALEDQTIS SDAVLQRLPE ENSP00000376333/1-1020 QITVVLPHSS CELLYLGTES GNVFVVQLPA FRALEDRTIS SDAVLQRLPE BACU011517/1-1062 QITVVLPHSS CQLLYLGTES GSVFVVQLPA FRALEDRTIS PDAVLQRLPE ENSBTAP00000026738/1-1018 QITVVLPHSS HQLLYLGTES GNVFAVRLPA FRTLEDRAIS SDAVLQWLPE 251 300 bmy_15342T0/1-727 ---------M VEALQEHPRD PNQILVGYSR GLVVIWDLQG SCVLCHFLSS ENSTTRP00000015021/1-1068 EVRHRRAFEM VEALQEHPRD PNQILIGYSR GLVVIWDLQG SCVLCHFLSS ENSP00000376333/1-1020 EARHRRVFEM VEALQEHPRD PNQILIGYSR GLVVIWDLQG SRVLYHFLSS BACU011517/1-1062 EVCHRRAFEM VEALQEHPQD PNQILVGYSR GLVVIWDLQG SCVLCHFLSS ENSBTAP00000026738/1-1018 EARQRRAFEI VEALQEHPRD PNQILIGYSR GLVVIWDLQG SRVLSHFLSS 301 350 bmy_15342T0/1-727 QQLENVCWQR DGHLIVSCHS DGSYCQWPVS SDTLQPEPLR SCVPYGPFPC ENSTTRP00000015021/1-1068 QQLENVCWQR DGHLIVSCHS DGSYCQWPVS SDTLQLEPLR SCVPYGPFPC ENSP00000376333/1-1020 QQLENIWWQR DGRLLVSCHS DGSYCQWPVS SEAQQPEPLR SLVPYGPFPC BACU011517/1-1062 QQLENVCWQR DGHLIVSCHS DGSYCQWPVS SDTPQPEPLR SCVPYGPFPC ENSBTAP00000026738/1-1018 QQLENVFWQR DSRLIVSCHS DGSYCQWRLT SNSPKPEPLR SCVPYGPFPC 351 400 bmy_15342T0/1-727 KAITKIFWLT TKQGLPFTIF QGGMPRASYG DRHCISVVHN GQQTAFDFTS ENSTTRP00000015021/1-1068 KAITKIFWLT TKQGLPFTIF QGGMPRASYG DRHCISVIHN GQQTAFDFTS ENSP00000376333/1-1020 KAITRILWLT TRQGLPFTIF QGGMPRASYG DRHCISVIHD GQQTAFDFTS BACU011517/1-1062 KAITKIFWLT TKQGLPFTIF QGGMPRASYG DRHCISVVHN GQQTAFDFTS ENSBTAP00000026738/1-1018 KAITKIFWLT TKQGLPFTIF QGGMPRASYG DRHCISVVHN GQQTAFDFTS 401 450 bmy_15342T0/1-727 RVIDFTVLIE ANPEAAFDDP YALVVLAEEE LVVIDLQTAG WPPVQPPYLA ENSTTRP00000015021/1-1068 RVIDFTVLIE ANPEAALDDP YALVVLAEEE LVVIDLQTAG WPPVQPPYLA ENSP00000376333/1-1020 RVIGFTVLTE ADPAATFDDP YALVVLAEEE LVVIDLQTAG WPPVQLPYLA BACU011517/1-1062 RVIDFTVLIE ANPEAAFDDP YALVVLAEEE LVVIDLQTAG WLPVQPPYLA ENSBTAP00000026738/1-1018 RVIDFTVLIE VDPAAAFDDP YALVVLAEEE LVVIDLQTAG WPPVQPPYLA 451 500 bmy_15342T0/1-727 SLHCSAITCS HHVSNIPLKL WERIIAAGSR QNTHFSTMEW PIDGGTSLAP ENSTTRP00000015021/1-1068 SLHCSAITCS HHVSNIPLKL WERIIAAGSR QNTHFSTMEW PIDGGTSLAP ENSP00000376333/1-1020 SLHCSAITCS HHVSNIPLKL WERIIAAGSR QNAHFSTMEW PIDGGTSLTP BACU011517/1-1062 SLHCSAITCS HHVSNIPLKL WERVVAAGSR QNTHFSTMEW PIDGGTSLAP ENSBTAP00000026738/1-1018 SLHCSAITCS HHVSNIPLKL WERIIAAGSR QSTHFSTMEW PIDGGTSLAP 501 550 bmy_15342T0/1-727 APPQRDLLLT GHEDGTVRFW DASGVCLQLL YKLSTVRVFL TDTDPNESLN ENSTTRP00000015021/1-1068 APPQRDLLLT GHEDGTVRFW DASGVCLRLL YKLSTVRVFL TDTDPSESLS ENSP00000376333/1-1020 APPQRDLLLT GHEDGTVRFW DASGVCLRLL YKLSTVRVFL TDTDPNENFS BACU011517/1-1062 APPQRDLLLT GHEDGTVRFW DASGVCLRLL YKLSTVRVFL TDTDPNESLN ENSBTAP00000026738/1-1018 APPQRDLLLT GHEDGTVRFW DASGVCLRLL YKLSTVRVFL TDTEPNESLS 551 600 bmy_15342T0/1-727 AQGEDEWPPL RKVGSFDPYS DDPRLGIQKI FLCKYSGYLA VAGTAGQVLV ENSTTRP00000015021/1-1068 AQGEDEWPPL RKVGSFDPYX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376333/1-1020 AQGEDEWPPL RKVGSFDPYS DDPRLGIQKI FLCKYSGYLA VAGTAGQVLV BACU011517/1-1062 AQGEDEWPPL RKVGSFDPYS DDPRLGIQKI FLCKYSGYLA VAGTAGQVLV ENSBTAP00000026738/1-1018 AQGEEEWPPL RKVGSFDPYS DDPRLGIQKI FLCKYSGYLA VAGTAGQVLV 601 650 bmy_15342T0/1-727 LELNDEEAEH AVEQVEADLL QDQEGYRWKG HERLCARPGP VHFEPGFQPF ENSTTRP00000015021/1-1068 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376333/1-1020 LELNDEAAEQ AVEQVEADLL QDQEGYRWKG HERLAARSGP VRFEPGFQPF BACU011517/1-1062 LELNDEEAEH AVQQVEADLL QDQEGYRWKG HERLCARPGP VHFEPGFQPF ENSBTAP00000026738/1-1018 LELNDEEAEH AVGQVEADLL RDQEGYRWKG HERLCARPGP VHFEPGFQPF 651 700 bmy_15342T0/1-727 VLVQCQPPAV VTSLALHSEW RLVAFGTSHG FGLFDHQQRR QVFVKCTLHP ENSTTRP00000015021/1-1068 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376333/1-1020 VLVQCQPPAV VTSLALHSEW RLVAFGTSHG FGLFDHQQRR QVFVKCTLHP BACU011517/1-1062 VLVQCQPPAV VTSLALHSEW RLVAFGTSHG FGLFDHQQRR QVFVKCTLHP ENSBTAP00000026738/1-1018 VLVQCQPPAV VTSLVLHSEW RLVAFGTSHG FGLFDHQQRR QVFVKCTLHP 701 750 bmy_15342T0/1-727 NDQLALEGPL SRVKSLKKSL RQSFRRIRRS RVSSRKRRPA GPPGEVQEGG ENSTTRP00000015021/1-1068 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVQEGS ENSP00000376333/1-1020 SDQLALEGPL SRVKSLKKSL RQSFRRMRRS RVSSRKRHPA GPPGEAQEGS BACU011517/1-1062 NDQLALEGPL SRVKSLKKSL RQSFRRIRRS RVSSRKRRPA GPPGEVQEGS ENSBTAP00000026738/1-1018 SDQLALEGPL SRVKSLKKSL RQSFRRIRRS RASSRKRRPT GPPGEVQEGS 751 800 bmy_15342T0/1-727 SRAERTGLHN MELAPVQRKI EARSAEDSFT GFVRTLYFAD TYLRDSE--- ENSTTRP00000015021/1-1068 SRAERTGLQN MELAPVQRKI EARSAEDSFT GFVRTLYFAD TYLRDSSRHC ENSP00000376333/1-1020 AKAERPGLQN MELAPVQRKI EARSAEDSFT GFVRTLYFAD TYLKDSSRHC BACU011517/1-1062 SRAERTGLQN MELAPVQRKI EARSAEDSFT GFVRTLYFAD TYLRDSSRHC ENSBTAP00000026738/1-1018 SRAERTGLQN MELAPVQRKI EARSAEDSFT GFVRTLYFAD TYLRDSSRHC 801 850 bmy_15342T0/1-727 ---WPAGGGG ---------P SGMRACR--- --------RL LAGAPLRGVP ENSTTRP00000015021/1-1068 PSLWAGTNGG TVYAFALRVP PAERRMDEPV RAEQAKEIQL MHRAPVVGI- ENSP00000376333/1-1020 PSLWAGTNGG TIYAFSLRVP PAERRMDEPV RAEQAKEIQL MHRAPVVGI- BACU011517/1-1062 PSLWAGTNGG TVYAFALRVP PAERRMDEPV RAEQAKEIQL MHRAPVVGI- ENSBTAP00000026738/1-1018 PSLWAGTNGG TVYAFALRVP PAERRMDEPV RAEQAKEIQL MHRAPVVGI- 851 900 bmy_15342T0/1-727 PVSKGRLCSQ GDPAD----- --APSARGGH P--------- ---------- ENSTTRP00000015021/1-1068 LVLDGHSVPL PEPLEVAHDL SKSPDMQGSH QLLVVSEEQF KVFTLPKVSA ENSP00000376333/1-1020 LVLDGHSVPL PEPLEVAHDL SKSPDMQGSH QLLVVSEEQF KVFTLPKVSA BACU011517/1-1062 LVLDGHSVPL PEPLEVAHDL SKSPDMQGSH QLLVVSEEQF KVFTLPKVSA ENSBTAP00000026738/1-1018 LVLDGHSVPL PEPLEVAHDL SKSPDMQGSH QLLVVSEEQF KVFTLPKVSA 901 950 bmy_15342T0/1-727 ---------G AGRTQRAPS- -----RAPGS GPRPVKEPRH AG-------- ENSTTRP00000015021/1-1068 RLKLKLTALE GSRVRRVSAA RFGSCRAEDY GEHHLAVLTN LGDIQVVSLP ENSP00000376333/1-1020 KLKLKLTALE GSRVRRVSVA HFGSRRAEDY GEHHLAVLTN LGDIQVVSLP BACU011517/1-1062 RLKLKLTALE GSRVRRVSAA RFGSCRAEDY GEHHLAVLTN LGDIQVVSLP ENSBTAP00000026738/1-1018 RLKLKLTALE GSRVRRVSAA RFGSCRAEDY GEHHLAVLTN LGDVQVVSLP 951 1000 bmy_15342T0/1-727 --KPPA--AC RVRGAVQGVH AAQGQRQAE- ------AEAD R--------- ENSTTRP00000015021/1-1068 LLKPQVRYSC IRREDVSGIA SCVFTKYGQG FYLISPSEFE RFSLSTKWLV ENSP00000376333/1-1020 LLKPQVRYSC IRREDVSGIA SCVFTKYGQG FYLISPSEFE RFSLSTKWLV BACU011517/1-1062 LLKPQVRYSC IRREDVSGIA SCVFTKYGQG FYLISPSEFE RFSLSTKWLV ENSBTAP00000026738/1-1018 LLKPQVRYSC IRREDVSGIA SCVFTKYGQG FYLISPSEFE RFSLSTKWLV 1001 1050 bmy_15342T0/1-727 -PGGLAGAAG QRGPLRQLSS RGLWGAPPGR PHQPGRHPGG ---------- ENSTTRP00000015021/1-1068 EPRCLVDSAE TKNHSRLHDR SGP-EKASGR ARNSGSQSDG EERRSGPVME ENSP00000376333/1-1020 EPRCLVDSAE TKNH-RPGNG AGP-KKAPSR ARNSGTQSDG EEKQPGLVME BACU011517/1-1062 EPRCLVDSAE TKNHSRLRDK SGP-EKALGR ARNSGSQSDG EERRSSPMME ENSBTAP00000026738/1-1018 EPRCLVE--- -KKRSRPRNG SGP-EKSLGR ARNSGSQSDG EERRSGPVME 1051 1100 bmy_15342T0/1-727 --LAAPAQAP GAVQLHPPGG RQRHRLLRLH QIRPRF-LPD LTLRV----- ENSTTRP00000015021/1-1068 HALLNDERVL KEIQSTLEGD RGSCGDWRSP RVAVGYSLSN GG-------- ENSP00000376333/1-1020 RALLSDERVL KEIQSTLEGD RGS-GNWRSH RAAVGCSLSN GGAE------ BACU011517/1-1062 HALLNDESVL KEIQSTLEGG RGSCGDWRSQ RVAVGYGLSN GGGRGSGCCR ENSBTAP00000026738/1-1018 HALLNDERVL KEIQSTLEGD RGSCGDWRSQ RVAVGYSLSN GGAE------ 1101 1150 bmy_15342T0/1-727 --- ENSTTRP00000015021/1-1068 --- ENSP00000376333/1-1020 --- BACU011517/1-1062 TVG ENSBTAP00000026738/1-1018 ---