KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:30:10 2014 Check: 00 ..
Name: ENSP00000471272/1-231 Len: 293 Check: 6622 Weight: 1.00
Name: ENSBTAP00000026757/1-215 Len: 293 Check: 1868 Weight: 1.00
Name: bmy_14010T0/1-213 Len: 293 Check: 8075 Weight: 1.00
Name: ENSTTRP00000002270/1-243 Len: 293 Check: 5381 Weight: 1.00
Name: BACU008284/1-185 Len: 293 Check: 5193 Weight: 1.00
//
1 50
ENSP00000471272/1-231 MGPPLWPDLQ EPPPPGTSSQ IRSPLLCDVI KPAPHHDVTV RVVPPPRFLP
ENSBTAP00000026757/1-215 ---------- ---------- ---------- ---------- ----------
bmy_14010T0/1-213 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000002270/1-243 -RAPLHPGLR APPLMTPQSR ----RLLRDT PGPSRCDVTE PGAPPSRFLR
BACU008284/1-185 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000471272/1-231 LLLRPLPSDG DIAMRRDRGP KPALGGAGEV EPGGMA---- --ASPTGRPR
ENSBTAP00000026757/1-215 ---------- ---MKRGHEP KPAFGGAGEA GPGVMAERPL VPACPTGRPG
bmy_14010T0/1-213 ---------- ---MKRGHKP NSAPGGAGEA GPGGMAERPQ VPACPTRQPG
ENSTTRP00000002270/1-243 GRLPPLPPRG GVAMKRWHEP KPAPSGAGEA GPGGMA---- --ACPTHRPG
BACU008284/1-185 ---------- ---------- ---------- ----MAERPL VPACPTRQPG
101 150
ENSP00000471272/1-231 RLQRYLQSGE FDQFRDFPIF ESNFV----- ---------- QVTRLGEVAN
ENSBTAP00000026757/1-215 RLQRHLLSGE FDQLRDFPIF ESNFV----- ---------- QVTRLGEVAN
bmy_14010T0/1-213 RLQRHLLSGE FDQLRDLPIF ESNFV----- ---------- QVTRLGEVAN
ENSTTRP00000002270/1-243 RLQRHLLSGE FDQLRDLPIF ESNFVQSHPI YLASTSDPRP QVTRLGEVAN
BACU008284/1-185 RLQRHLLSGE FDQLRDLPIF ESNFV----- ---------- QVTRLGEVAN
151 200
ENSP00000471272/1-231 EVTMGVAASS PALELPDLLL LAGPAKENGH LQLFGLFPLK FVQLFVHDKS
ENSBTAP00000026757/1-215 KVTMGVAASS PALELPDLLL LAGPAKENGH LQLFGLFPLQ FVQLFVHDES
bmy_14010T0/1-213 KVTMGVAASS PALELPDLLL LAGPAKENGR LQLFGLFPLQ FVQLFVHDES
ENSTTRP00000002270/1-243 KVTMGVAASS PALELPDLLL LAGSAKENGR LQLFGLFPLQ FVQLFVHDES
BACU008284/1-185 KVTMGVAASS PALELPDLLL LAGPAKENGR LQLFGLFPLQ FVQLFVHDES
201 250
ENSP00000471272/1-231 RCQLEVKLNT SRTFYLQLRA PLKTRDREFG QWVRLLYRLR FLSA-SAVPF
ENSBTAP00000026757/1-215 RWQLKVKFRT GRAFYLQLRA PPESRDREFG QWVRLLYRLR FHSAQGAVPF
bmy_14010T0/1-213 RWQLKVKFRT GRAFYLQLRA PPETRDREFG QWVRLLYRLR FHSSQGAVPF
ENSTTRP00000002270/1-243 RWQLKVKFRT GRAFYLQLRA PPESRDRKFG QWVRLLYRLR FHSAQGAVPF
BACU008284/1-185 RWQLKVKFHT GRAFYLQLRA PPETRDREFG QWVRLLYRLR FHSAQGAVPF
251 300
ENSP00000471272/1-231 TQE------- ---------- ---------- ---------- ---
ENSBTAP00000026757/1-215 TQDYSALEDD EDDDEDEDRD LPAGELQAME ARLDPQMSEL WGL
bmy_14010T0/1-213 TQEYSALEDD EEEDEDE--D LTEQEEVSGG ASSHGSQIGP TDL
ENSTTRP00000002270/1-243 TQEC------ ---------- ---------- ---------- ---
BACU008284/1-185 TQEYSALEDD EEEDEDE--D LTEQEKVSAG VATATR---- ---