KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:13 2014 Check: 00 .. Name: ENSTTRP00000004194/1-677 Len: 1056 Check: 8651 Weight: 1.00 Name: ENSP00000364589/1-759 Len: 1056 Check: 7588 Weight: 1.00 Name: bmy_15908T0/1-649 Len: 1056 Check: 2793 Weight: 1.00 Name: BACU017395/1-983 Len: 1056 Check: 3622 Weight: 1.00 Name: ENSBTAP00000026769/1-720 Len: 1056 Check: 1317 Weight: 1.00 // 1 50 ENSTTRP00000004194/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000364589/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15908T0/1-649 ---------- ---------- ---------- ---------- ---------- BACU017395/1-983 MRPPRPPHPT GGQANEVLVR WKRARSYLLE ELFEGNLEKE CYEEICVYEE ENSBTAP00000026769/1-720 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004194/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000364589/1-759 ----MADEAP RKGSFSALVG RTNGLTKPA- ---------A LAAAPAKPGG bmy_15908T0/1-649 ----MADETP RKGSFSALVG HTNGLTKPA- -------SLA AAAVTSKPGA BACU017395/1-983 AREVFENDAS TDEFWKTYLG GSPCVSQPCL NNGSCQDSIR GYTCTCAPGY ENSBTAP00000026769/1-720 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004194/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000364589/1-759 AGGSK----- ---------- ---------- ---------- ---------- bmy_15908T0/1-649 AGGSK----- ---------- ---------- ---------- ---------- BACU017395/1-983 DGRDCAFAKN ECHPLRTDGC QHFCHPGPGS YTCSCAKGHK LGQDRRSCIP ENSBTAP00000026769/1-720 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000004194/1-677 ---------- ---------- -------R-- ---------- ---------- ENSP00000364589/1-759 ---------- --------KL VIKNFRDR-- ---------- ---------- bmy_15908T0/1-649 ---------- --------KL VIKNFRDR-- ---------- ---------- BACU017395/1-983 HGMRAGPSDF PVAERVYFAL LLAGRRSRAE ASGRCVEARP DGGHSSVTSG ENSBTAP00000026769/1-720 ---------- ---------L TLSALTDR-- ---------- ---------- 201 250 ENSTTRP00000004194/1-677 ---------- PKLPDNYTQD TWQKLHEAVR AIQSSTSIRY NLEELYQAVE ENSP00000364589/1-759 ---------- PRLPDNYTQD TWRKLHEAVR AVQSSTSIRY NLEELYQAVE bmy_15908T0/1-649 ---------- PKLPDNYTQD TWQKLHEAVK AIQSSTSIRY NLEELYQAVE BACU017395/1-983 PERTEGGDIK PKLPDNYTQD TWQKLHEAVK AIQSSTSIRY NLEELYQAVE ENSBTAP00000026769/1-720 ---------- PKLPDNYTQD TWQKLHEAVR AIQSSTSIRY NLEELYQAVE 251 300 ENSTTRP00000004194/1-677 NLCSHKVSPV LYQQLRQACE GHVQAQILQF R----DSLDS VLFLKKINTC ENSP00000364589/1-759 NLCSHKVSPM LYKQLRQACE DHVQAQILPF RE---DSLDS VLFLKKINTC bmy_15908T0/1-649 NLCSHKVSPV LYQQLRQ--- ---------- ---------- ---------- BACU017395/1-983 NLCSHKVSPV LYQQLRQ--- ---------- ---------- ---------- ENSBTAP00000026769/1-720 NLCSHKVSPT LYQQLRQACE GHVQAQILQF RQPCTDSLDS VLFLKKMNTC 301 350 ENSTTRP00000004194/1-677 WQDHCRQMIM IRSIFLFLDR TYVLQNSMLP SIWDMGLELF RNHIISDKMV ENSP00000364589/1-759 WQDHCRQMIM IRSIFLFLDR TYVLQNSTLP SIWDMGLELF RTHIISDKMV bmy_15908T0/1-649 ---------- ---------- ---------- ---------- ---------- BACU017395/1-983 --------IM IRSIFLFLDR TYVLQNSMLP SIWDMGLELF RNHIVSDKMV ENSBTAP00000026769/1-720 WQDHCRQMIM IRSIFLFLDR TYVLQNSTLP SIWDMGLELF RNHIISDKMV 351 400 ENSTTRP00000004194/1-677 QTKTIDGILL LIKRERSGEA VDRSLLRGLL GMLSDLQVYK DSFELKFLEE ENSP00000364589/1-759 QSKTIDGILL LIERERSGEA VDRSLLRSLL GMLSDLQVYK DSFELKFLEE bmy_15908T0/1-649 ---------- ---------- ---------- -------VYK DSFELKFLEE BACU017395/1-983 QTKTIDGILL LVARERSGEA VDRSLLRSLL GMLSDLQ--- ---------- ENSBTAP00000026769/1-720 QTKTIDGILL LIERERSGEA VDRSLLRSLL GMLSDLQVYK DSFELKFLEE 401 450 ENSTTRP00000004194/1-677 TNCLYAAEGQ RLMQEREVPE YLNHVSKRLG EEGDRVITYL DHSTQKPLIA ENSP00000364589/1-759 TNCLYAAEGQ RLMQEREVPE YLNHVSKRLE EEGDRVITYL DHSTQKPLIA bmy_15908T0/1-649 TNCLYAAEGQ RLMQEREVPE YLNHVSKRLG EEGDRVITYL DHSTQKPLIA BACU017395/1-983 ---------- -------VPE YLNHVSKRLG EEGDRVITYL DHSTQKPLIA ENSBTAP00000026769/1-720 TNCLYAAEGQ RLMQEREVPE YLDHVSKRLE EEADRVITYL DHSTQKPLIA 451 500 ENSTTRP00000004194/1-677 CVEKQLLGEH LTAILQKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000364589/1-759 CVEKQLLGEH LTAILQKGLD HLLDENRVPD LAQMYQLFSR VRGGQQALLQ bmy_15908T0/1-649 CVEKQLLGEH LTAILQKGLD HLLDENRVPD LTQMYQLFSR VRGGQQALLQ BACU017395/1-983 CVEKQLLGEH LTAILQKGLD HLLDENRVPD LTQMYQLFSH VRGGQQALLQ ENSBTAP00000026769/1-720 CVEKQLLGEH LTAILQKGLD HLLDENRVPD LTQMYQLFSR VRGGQQALLQ 501 550 ENSTTRP00000004194/1-677 XXXXXXXTFG TTIVINPEKD KDMVQDLLDF KDRVDHVIEV CFQRNEKFIN ENSP00000364589/1-759 HWSEYIKTFG TAIVINPEKD KDMVQDLLDF KDKVDHVIEV CFQKNERFVN bmy_15908T0/1-649 HWSEYIKTFG TTIVINPEKD KDMVQDLLDF KDRVDHVVEV CFQRNEKFIN BACU017395/1-983 HWSEYIKTFG TTIVINPEKD KDMVQDLLDF KDRVDHVVEV CFQRNEKFIN ENSBTAP00000026769/1-720 HWSDYIKTFG TTIVINPEKD KDMVQDLLDF KDRVDHVIDV CFQRSEKFVN 551 600 ENSTTRP00000004194/1-677 LMKESFESFI NKRPNKPAEL IAKHVDSKLR AGNKEATDEE LERILDKIMI ENSP00000364589/1-759 LMKESFETFI NKRPNKPAEL IAKHVDSKLR AGNKEATDEE LERTLDKIMI bmy_15908T0/1-649 LMKESFESFI NKRPNKPAEL IAKHVDSKLR AGNKEATDEE LERILDKIMI BACU017395/1-983 LMKESFESFI NKRPNKPAEL IAKHVDSKLR AGNKEATDEE LERILDKIMI ENSBTAP00000026769/1-720 LMKESFETFI NKRPNKPAEL IAKHVDSKLR AGNKEATDEE LERMLDKVMI 601 650 ENSTTRP00000004194/1-677 LFRFIHGKDV FEAFYKKDLA KRLLVGKSAS VDAEKSMLSK LKHECGAAFT ENSP00000364589/1-759 LFRFIHGKDV FEAFYKKDLA KRLLVGKSAS VDAEKSMLSK LKHECGAAFT bmy_15908T0/1-649 LFRFIHGKDV FEAFYKKDLA KRLLVGKSAS VDAEKSMLSK LKHECGAAFT BACU017395/1-983 LFRFIHGKDV FEAFYKKDLA KRLLVGKSAS VDAEKSMLSK LKHECGAAFT ENSBTAP00000026769/1-720 LFRFIHGKDV FEAFYKKDLA KRLLVGKSAS VDAEKSMLSK LKHECGAAFT 651 700 ENSTTRP00000004194/1-677 SKLEGMFKDM ELSKDIMVHF KQ-----YMQ NQSDPGSIDL TVNILTMGYW ENSP00000364589/1-759 SKLEGMFKDM ELSKDIMVHF KQ-----HMQ NQSDSGPIDL TVNILTMGYW bmy_15908T0/1-649 SKLEGMFKDM ELSKDIMVHF KQASCVLYMQ NQSDPGSIDL TVNILTMGYW BACU017395/1-983 SKLEGMFKDM ELSKDIMVHF KQASG--YMQ NQSDPGSIDL TVNILTMGYW ENSBTAP00000026769/1-720 SKLEGMFKDM ELSKDIMVHF KQ-----YMQ NQSDPGSIDL TVNILTMGYW 701 750 ENSTTRP00000004194/1-677 PTYTPMEVHL TPE------- ---------- ---------- ---------- ENSP00000364589/1-759 PTYTPMEVHL TPE------- ---------- ---------- ---------- bmy_15908T0/1-649 PTYIPMEVHL TPE------- ---------- ---------- ---------- BACU017395/1-983 PTYIPMEVHL TPEAPTSPAT VSAVPFSGGG STPVLRPHDA ALLELQAALA ENSBTAP00000026769/1-720 PTYTPMEVHL TPE------- ---------- ---------- ---------- 751 800 ENSTTRP00000004194/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000364589/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15908T0/1-649 ---------- ---------- ---------- ---------- ---------- BACU017395/1-983 GSRLAGGLDA GRAGPATGFS VPGPGPHAVP LPLVMTMPVL TWLRWQPVCS ENSBTAP00000026769/1-720 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000004194/1-677 --MIKLQEVF KTFYLGKHSG RKLQWQTTLG HAVLKAEFKE GKKELQVSLL ENSP00000364589/1-759 --MIKLQEVF KAFYLGKHSG RKLQWQTTLG HAVLKAEFKE GKKEFQVSLF bmy_15908T0/1-649 --MIKLQEVF KTFYLGKHSG RKLQWQTTLG HAVLKAEFKE GKKELQVSLF BACU017395/1-983 FQMIKLQEVF KTFYLGKHSG RKLQWQTTLG HAVLKAEFKE GKKEFQVSLF ENSBTAP00000026769/1-720 --MIKLQEVF KTFYLGKHSG RKLQWQTTLG HAVLKAEFKE GKKEFQVSLF 851 900 ENSTTRP00000004194/1-677 QTLVLLMFNE GDGFSFEDIK MATGI----- ---------- ---------- ENSP00000364589/1-759 QTLVLLMFNE GDGFSFEEIK MATGI----- ---------- ---------- bmy_15908T0/1-649 QTLVLLLFNQ GDGFSFEDVK MATGI----- ---------- ---------- BACU017395/1-983 QTLVLLMFNE GDGFSFEDIK MATGIGRHAS SAAGASGEEE METRALRVAP ENSBTAP00000026769/1-720 QTLVLLMFNE GDGFSFEDIR MATGI----- ---------- ---------- 901 950 ENSTTRP00000004194/1-677 ---------- ------EGSE LRRTLQSLAC GRARVLIKSP RGREVEDGDR ENSP00000364589/1-759 ---------- ------EDSE LRRTLQSLAC GKARVLIKSP KGKEVEDGDK bmy_15908T0/1-649 ---------- ------EDGE LRRTLQSLAC GKARVLIKSP KGREVEDGDK BACU017395/1-983 EVMAARGPDL CAFSRSEDGE LRRTLQSLAC GKARVLVKSP KGREVEDGDK ENSBTAP00000026769/1-720 ---------- ------EDSE LRRTLQSLAC GKARVLLKSP KGKEVEDGDK 951 1000 ENSTTRP00000004194/1-677 FVFNGEFKHK LFRIKINQIQ MKETVEEQAS TTERVFQDRQ YQIDAAIVRI ENSP00000364589/1-759 FIFNGEFKHK LFRIKINQIQ MKETVEEQVS TTERVFQDRQ YQIDAAIVRI bmy_15908T0/1-649 FIFNGEFKHK LFRIKINQIQ MKETVEEQVS TTERVFQDRQ YQIDAAIVRI BACU017395/1-983 FIFNGEFKHK LFRIKINQIQ MKETVEEQVS TTERVFQDRQ YQIDAAIVRI ENSBTAP00000026769/1-720 FLFNAEFKHK LFRIKINQIQ MKETVEEQVS TTERVFQDRQ YQIDAAIVRI 1001 1050 ENSTTRP00000004194/1-677 MKMRKTLGHN LLVSELYNQL KFPVK----- ---------- ---------- ENSP00000364589/1-759 MKMRKTLGHN LLVSELYNQL KFPVKPGDLK KRIESLIDRD YMERDKDNPN bmy_15908T0/1-649 MKMRKTLGHN LLVSELYNQL KFPVKPGDLK KRIESLIDRD YMERDQDSPN BACU017395/1-983 MKMRKTLGHN LLVSELYNQL KFPVKPGDLK KRIESLIDRD YMERDQDSPN ENSBTAP00000026769/1-720 MKMRKTLGHN LLVSELYNQL KFPVKPGDLK KRIESLIDRD YMERDKDSPN 1051 1100 ENSTTRP00000004194/1-677 ------ ENSP00000364589/1-759 QYHYVA bmy_15908T0/1-649 QYRYVA BACU017395/1-983 QYRYVA ENSBTAP00000026769/1-720 QYHYVA