KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:14 2014 Check: 00 .. Name: bmy_04532T0/1-578 Len: 1260 Check: 7957 Weight: 1.00 Name: ENSBTAP00000026780/1-720 Len: 1260 Check: 7577 Weight: 1.00 Name: BACU005760/1-963 Len: 1260 Check: 9282 Weight: 1.00 Name: ENSTTRP00000002476/1-1031 Len: 1260 Check: 1672 Weight: 1.00 Name: ENSP00000363763/1-987 Len: 1260 Check: 3556 Weight: 1.00 // 1 50 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 ---------- ---------- ---MDSTTAT AELGWIVHPP SGWEEVSGYD ENSTTRP00000002476/1-1031 ---------- ---------- -TLMDSTTAT AELGWIVHPP SGWEEVSGYD ENSP00000363763/1-987 MALRRLGAAL LLLPLLAAVE ETLMDSTTAT AELGWMVHPP SGWEEVSGYD 51 100 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 ENMNTIRTYQ VCNVFESSQN NWLRTKFIRR RGAHRIHVEM KFSVRDCSSI ENSTTRP00000002476/1-1031 ENMNTIRTYQ VCNVFESSQN NWLRTKFIRR RGAHRIHVEM KFSVRDCSSI ENSP00000363763/1-987 ENMNTIRTYQ VCNVFESSQN NWLRTKFIRR RGAHRIHVEM KFSVRDCSSI 101 150 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 PSVPGSCKET FNLYYYEADF DSATKTFPNW MENPWVKVDT IAADESFSQV ENSTTRP00000002476/1-1031 PSVPGSCKET FNLYYYEADF DSATKTFPNW MENPWVKVDT IAADESFSQV ENSP00000363763/1-987 PSVPGSCKET FNLYYYEADF DSATKTFPNW MENPWVKVDT IAADESFSQV 151 200 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 DLGGRVMKIN TEVRSFGPVS RSGFYLAFQD YGGCMSLIAV RVFYRKCPRV ENSTTRP00000002476/1-1031 DLGGRVMKIN TEVRSFGPVS RSGFYLAFQD YGGCMSLIAV RVFYRKCPRI ENSP00000363763/1-987 DLGGRVMKIN TEVRSFGPVS RSGFYLAFQD YGGCMSLIAV RVFYRKCPRI 201 250 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 IQNGAIFQET LSGAESTSLV AARGSCIANA EEVDVPIKLY CNGDGEWLVP ENSTTRP00000002476/1-1031 IQNGAIFQET LSGAESTSLV AARGSCIANA EEVDVPIKLY CNGDGEWLVP ENSP00000363763/1-987 IQNGAIFQET LSGAESTSLV AARGSCIANA EEVDVPIKLY CNGDGEWLVP 251 300 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 ---------- ---------- GCPSGTFKAN QGDEACTHCP INSRTTSEGA BACU005760/1-963 IGRCMCKAGF EAVENGTVCR GCPSGTFKAN QGDEACTHCP INSRTTSEGA ENSTTRP00000002476/1-1031 IGRCMCKAGF EAVENGTVCR GCPSGTFKAN QGDEACTHCP INSRTTSEGA ENSP00000363763/1-987 IGRCMCKAGF EAVENGTVCR GCPSGTFKAN QGDEACTHCP INSRTTSEGA 301 350 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 TNCVCRNGYY RADLDPVDMP CTTIPSAPQA VISSVNETSL MLEWTPPRDS BACU005760/1-963 TNCVCRNGYY RADLDPLDMP CTTIPSAPQA VISSVNETSL MLEWSPPRDS ENSTTRP00000002476/1-1031 TNCVCRNGYY RADLDPLDMP CTTIPSAPQA VISSVNETSL MLEWSPPRDS ENSP00000363763/1-987 TNCVCRNGYY RADLDPLDMP CTTIPSAPQA VISSVNETSL MLEWTPPRDS 351 400 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 GGREDLVYNI ICKSCGSGRG ACTRCGDNVQ YAPRQLGLTE PRIYISDLLA BACU005760/1-963 GGREDLVYNI ICKSCGSGRG ACTRCGDNVQ YAPRQLGLTE PRIYISDLLA ENSTTRP00000002476/1-1031 GGREDLVY-I ICKSCGSGRD ACTRCGDNVQ YAPRQLGLTE PRIYISDLLA ENSP00000363763/1-987 GGREDLVYNI ICKSCGSGRG ACTRCGDNVQ YAPRQLGLTE PRIYISDLLA 401 450 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- -MHQVSRTVD ENSBTAP00000026780/1-720 HTQYTFEIQA VNGVTDQSPF SPQFASVNIT TNQAAPSAVS IMHQVSRTVD BACU005760/1-963 HTQYTFEIQA VNGVTDQSPF SPQFASVNIT TNQAAPSAVS IMHQVSRTVD ENSTTRP00000002476/1-1031 HTQYTFEIQA VNGVTDQSPF SPQFASVNIT TNQAAPSAVS IMHQVSRTVD ENSP00000363763/1-987 HTQYTFEIQA VNGVTDQSPF SPQFASVNIT TNQAAPSAVS IMHQVSRTVD 451 500 bmy_04532T0/1-578 SITLSWSQPD QPNGVILDYE LQYYEKELSE YNATAIKSPT NTVTVQGLKA ENSBTAP00000026780/1-720 SITLSWSQPD QPNGVILDYE LQYYEKELSE YNATAIKSPT NTVTVQGLKA BACU005760/1-963 SITLSWSQPD QPNGVILDYE LQYYEKELSE YNATAIKSPT NTVTVQGLKA ENSTTRP00000002476/1-1031 SITLSWSQPD QPNGVILDYE LQYYEKELSE YNATAIKSPT NTVTVQGLKA ENSP00000363763/1-987 SITLSWSQPD QPNGVILDYE LQYYEKELSE YNATAIKSPT NTVTVQGLKA 501 550 bmy_04532T0/1-578 GAIYVFQVRA RTVAGYGRYS GKMYFQTMTE AEYQTS---I QEKLPLIIGS ENSBTAP00000026780/1-720 GAIYVFQVRA RTVAGYGRYS GKMYFQTMTE GKRGQSAGGI QEKLPLIIGS BACU005760/1-963 GAIYVFQVRA RTVAGYGRYS GKMYFQTMTE AEYQTS---I QEKLPLIIGS ENSTTRP00000002476/1-1031 GAIYVFQVRA RTVAGYGRYS GKMYFQTMTE AEYQTS---I QEKLPLIIGS ENSP00000363763/1-987 GAIYVFQVRA RTVAGYGRYS GKMYFQTMTE AEYQTS---I QEKLPLIIGS 551 600 bmy_04532T0/1-578 SAAGLVFLIA VVVIAIVCNR RRGFERADSE YTDKLQHYTS GHMTPGMKIY ENSBTAP00000026780/1-720 SAAGLVFLIA VVVIAIVCNR RRGFERADSE YTDKLQHYTS GHMTPGMKIY BACU005760/1-963 SAAGLVFLIA VVVIAIVCN- RRGFERADSE YTDKLQHYTS GHMTPGMKIY ENSTTRP00000002476/1-1031 SAAGLVFLIA VVVIAIVCN- RRGFERADSE YTDKLQHYTS GHMTPGMKIY ENSP00000363763/1-987 SAAGLVFLIA VVVIAIVCNR RRGFERADSE YTDKLQHYTS GHMTPGMKIY 601 650 bmy_04532T0/1-578 IDPFTYEDPN EAVREFAKEI DISCVKIEQ- ---------- ---------- ENSBTAP00000026780/1-720 IDPFTYEDPN EAVREFAKEI DISCVKIEQV IGAGEFGEVC SGHLKLPGKR BACU005760/1-963 IDPFTYEDPN EAVREFAKEI DISCVKIEQV IGAGEFGEVC SGHLKLPGKR ENSTTRP00000002476/1-1031 IDPFTYEDPN EAVREFAKEI DISCVKIEQV IGAGEFGEVC SGHLKLPGKR ENSP00000363763/1-987 IDPFTYEDPN EAVREFAKEI DISCVKIEQV IGAGEFGEVC SGHLKLPGKR 651 700 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 EIFVAIKTLK SGYTEKQRRD FLSEASIMGQ FDHPNVIHLE GVVTKSTPVM BACU005760/1-963 EIFVAIKTLK SGYTEKQRRD FLSEASIMGQ FDHPNVIHLE GVVTKSTPVM ENSTTRP00000002476/1-1031 EIFVAIKTLK SGYTEKQRRD FLSEASIMGQ FDHPNVIHLE GVVTKSTPVM ENSP00000363763/1-987 EIFVAIKTLK SGYTEKQRRD FLSEASIMGQ FDHPNVIHLE GVVTKSTPVM 701 750 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 IITEFMENGS LDSFLRQNDG QFTVIQLVGM LRGIAAGMKY LADMNYVHRD BACU005760/1-963 IITEFMENGS LDSFLRQNDG QFTVIQLVGM LRGIAAGMKY LADMNYVHRD ENSTTRP00000002476/1-1031 IITEFMENGS LDSFLRQNDG QFTVIQLVGM LRGIAAGMKY LADMNYVHRD ENSP00000363763/1-987 IITEFMENGS LDSFLRQNDG QFTVIQLVGM LRGIAAGMKY LADMNYVHRD 751 800 bmy_04532T0/1-578 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026780/1-720 LAARNILVNS NLVCKVSDFG LSRFLEDDTS DPTYTSALGG KIPIRWTAPE BACU005760/1-963 LAARNILVNS NLVCKVSDFG LSRFLEDDTS DPTYTSALGG KIPIRWTAPE ENSTTRP00000002476/1-1031 LAARNILVNS NLVCKVSDFG LSRFLEDDTS DPTYTSALGG KIPIRWTAPE ENSP00000363763/1-987 LAARNILVNS NLVCKVSDFG LSRFLEDDTS DPTYTSALGG KIPIRWTAPE 801 850 bmy_04532T0/1-578 ---------- ---------- ---------- --------VI NAIEQDYRLP ENSBTAP00000026780/1-720 AIQYRKFTSA SDVWSYGIVM WEVMSYGERP YWDMTNQDVI NAIEQDYRLP BACU005760/1-963 AIQYRKFTSA SDVWSYGIVM WEVMSYGERP YWDMTNQDVI NAIEQDYRLP ENSTTRP00000002476/1-1031 AIQYRKFTSA SDVWSYGIVM WEVMSYGERP YWDMTNQDVI NAIEQDYRLP ENSP00000363763/1-987 AIQYRKFTSA SDVWSYGIVM WEVMSYGERP YWDMTNQDVI NAIEQDYRLP 851 900 bmy_04532T0/1-578 PPMDCPSALH QLMLDCWQKD RNHRPKFGQI VNTLDKMIRN PNSLKAMAPL ENSBTAP00000026780/1-720 PPMDCPSALH QLMLDCWQKD RNHRPKFGQI VNTLDKMIRN PNSLKAMAPL BACU005760/1-963 PPMDCPSALH QLMLDCWQKD RNHRPKFGQI VNTLDKMIRN PNSLKAMAPL ENSTTRP00000002476/1-1031 PPMDCPSALH QLMLDCWQKD RNHRPKFGQI VNTLDKMIRN PNSLKAMAPL ENSP00000363763/1-987 PPMDCPSALH QLMLDCWQKD RNHRPKFGQI VNTLDKMIRN PNSLKAMAPL 901 950 bmy_04532T0/1-578 SSGINLPLLD RTIPDYTSFN TVDEWLEAIK MGQYKESFAN AGFTSFDGHS ENSBTAP00000026780/1-720 SSGINLPLLD RTIPDYTSFN TVDEWLEAIK MGQYKESFAN AGFTSFD--- BACU005760/1-963 SSGINLPLLD RTIPDYTSFN TVDEWLEAIK MGQYKESFAN AGFTSFD--- ENSTTRP00000002476/1-1031 SSGINLPLLD RTIPDYTSFN TVDEWLEAIK MGQYKESFAN AGFTSFD--- ENSP00000363763/1-987 SSGINLPLLD RTIPDYTSFN TVDEWLEAIK MGQYKESFAN AGFTSFD--- 951 1000 bmy_04532T0/1-578 PGWGHLGWSP EKNPEQYPGD AGTDEPDPVC GGLTFTCLGS PLPPGPAPST ENSBTAP00000026780/1-720 ---------- ---------- --------VV SQMMMEDI-- ---------- BACU005760/1-963 ---------- ---------- --------VV SQMMMEDI-- ---------- ENSTTRP00000002476/1-1031 ---------- ---------- --------VV SQMMMEDI-- ---------- ENSP00000363763/1-987 ---------- ---------- --------VV SQMMMEDI-- ---------- 1001 1050 bmy_04532T0/1-578 PHAGPRFFVH RRVSHLPGGH GQQEEPSSAP AMRRHQEHVQ LQMME----- ENSBTAP00000026780/1-720 ---------- LRVGVTLAGH -QKKILNSIQ VMRAQMNQIQ SVEV------ BACU005760/1-963 ---------- LRVGVTLAGH -QKKILNSIQ VMRAQMNQIQ SVEV------ ENSTTRP00000002476/1-1031 ---------- LRVGVTLAGH -QKKILNSIQ VMRAQMNQIQ SVEGQPPARR ENSP00000363763/1-987 ---------- LRVGVTLAGH -QKKILNSIQ VMRAQMNQIQ SVEV------ 1051 1100 bmy_04532T0/1-578 ---------- ---------- ----KREWGQ KKIDPGRGRE TQGIVFKEDS ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002476/1-1031 PRATGRTKQR QPDVTKKTCN SDDGKKGMGK KKIDPGRGRE TRGIVLKEDS ENSP00000363763/1-987 ---------- ---------- ---------- ---------- ---------- 1101 1150 bmy_04532T0/1-578 HRESDHCSWR KKRAWEIHAV CPIGDQKQFL SSSLWEGDLA GAKKHFQEHK ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002476/1-1031 HKESDHCSWR R--------- ---------- ---------- ---------- ENSP00000363763/1-987 ---------- ---------- ---------- ---------- ---------- 1151 1200 bmy_04532T0/1-578 CEGETQGPHF SPVPGAALPK YFRNSNERDL FLLSAPGAEK GLLSSWVRES ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002476/1-1031 ---------- ---------- ---------- ---------- ---------- ENSP00000363763/1-987 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_04532T0/1-578 MGTPERSAFL RLTIPLPPVC SSTSTSRAQL GGHGPAGHPL LPVHTWRTDT ENSBTAP00000026780/1-720 ---------- ---------- ---------- ---------- ---------- BACU005760/1-963 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002476/1-1031 ---------- ---------- ---------- ---------- ---------- ENSP00000363763/1-987 ---------- ---------- ---------- ---------- ---------- 1251 1300 bmy_04532T0/1-578 AMTAISYDCH ENSBTAP00000026780/1-720 ---------- BACU005760/1-963 ---------- ENSTTRP00000002476/1-1031 ---------- ENSP00000363763/1-987 ----------