KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:14 2014 Check: 00 .. Name: ENSP00000297988/1-342 Len: 342 Check: 692 Weight: 1.00 Name: ENSBTAP00000026782/1-330 Len: 342 Check: 3712 Weight: 1.00 Name: ENSTTRP00000010030/1-338 Len: 342 Check: 5080 Weight: 1.00 Name: bmy_05677T0/1-291 Len: 342 Check: 2900 Weight: 1.00 Name: BACU006653/1-318 Len: 342 Check: 9937 Weight: 1.00 // 1 50 ENSP00000297988/1-342 MVQASGHRRS TRGSKMVSWS VIAKIQEILQ RKMVREFLAE FMSTYVMMVF ENSBTAP00000026782/1-330 MTQSDRKRRS TRVSKVVSTP TATKMQVIWQ NENVREFLAE FISTYVMMVF ENSTTRP00000010030/1-338 MDQADKKKQS TCMSKMVTPS AVRRMQTVLQ KEMVREFLAE FLSTFVMMVF bmy_05677T0/1-291 MTQADRKKRS TRMSKMVTLP AVTRMQAVLQ KEMVREFLAE FLSTFVMMVF BACU006653/1-318 ---------- --MSKMVTPP VVTRMKAVLQ KEMVREFLAE FLSTFVMMVF 51 100 ENSP00000297988/1-342 GLGSVAHMVL NKKYGSYLGV NLGFGFGVTM GVHVAGRISG AHMNAAVTFA ENSBTAP00000026782/1-330 GLGAVAHMVL GGKMGSYLAV NLGFGFGVTI GVHMAGNISG AHMNAALTFT ENSTTRP00000010030/1-338 GLGSVAHMVL GDKMGSFLGV NLGFGFGVTM GVHMAGNISG AHMNAALTFT bmy_05677T0/1-291 GLGSIAHMVL GDKMGSYLGV NLGFGFGVTM GVHMAGNISG AHMNAALTFT BACU006653/1-318 GLGAIAHMVL GDKMGSYLGV NLGFGFGVTM GVHMAGNISG AHMNAALTFT 101 150 ENSP00000297988/1-342 NCALGRVPWR KFPVYVLGQF LGSFLAAATI YSLFYTAILH FSGGQLMVTG ENSBTAP00000026782/1-330 SCALGRMSWK KFPVYVLGQF LGSFVAAATI YGLFYNAIID FSGGKLMTTG ENSTTRP00000010030/1-338 NCALGRMSWK KFPVYVLGQF LGSFLAAATI YCLFYTAIID YSGGSLTVTG bmy_05677T0/1-291 NCALGRMSWK KFPVYVLGQF LGSFLAAATI YCLFYTAIID YSGGRLTVTG BACU006653/1-318 NCALGRMSWK KFPVYVLGQF LGSFLAAATI YCLFYTAIID YSGGRLTVTG 151 200 ENSP00000297988/1-342 PVATAGIFAT YLPDHMTLWR GFLNEAWLTG MLQLCLFAIT DQENNPALPG ENSBTAP00000026782/1-330 PTATANIFAT YLPDHMTLWR GFLDEVVVTG MLQLCLLAIA DKGNNPTLLG ENSTTRP00000010030/1-338 PTATANIFAT YLPDHMTLWR GFLDEVLVTG MLQLCLLAIT DKGNNPALEG bmy_05677T0/1-291 PTATANIFAT YLPDHMTLWR GFLDEVLVTG MLQLCLLAIT DKGNNPALQG BACU006653/1-318 PTATANIFAT YLPDHMTLWR GFLDEVLVTG MLQLCLLAIT DKGNNPALQG 201 250 ENSP00000297988/1-342 TEALVIGILV VIIGVSLGMN TGYAINPSRD LPPRIFTFIA GWGKQVFSNG ENSBTAP00000026782/1-330 TQAIVTGILV VIIGISLGMN SGYAINPSRD LPPRFFTFLA GWGSQVFRT- ENSTTRP00000010030/1-338 TQALVIGILV VIIGVSMGMN TGYAINPSRD LPPRFFTFIA GWGTQVFST- bmy_05677T0/1-291 TQALVIGILV VIIGASMGMN SGYAINPSRD LPPRFFTFIA GWGTEVFST- BACU006653/1-318 TQALVIGILV VIIGASMGMN SGYAINPSRD LPPRFFTFIA GWGTQVFSA- 251 300 ENSP00000297988/1-342 ENWWWVPVVA PLLGAYLGGI IYLVFIGSTI PREPLKLEDS VAYEDHGITV ENSBTAP00000026782/1-330 KDWWWVPVVA PPLGAYCGAI IYLFFIGSNK RQEPQVLENP LAFEDHKISV ENSTTRP00000010030/1-338 KDWWWVPVVA PPLGAYLGAI IYLIFIGSSI QQKPQILETP STYEDHGTPV bmy_05677T0/1-291 KDWWWVPVVA PPLGAYLGAI IYLIFIGSSI QREPQILETP ST-------- BACU006653/1-318 KDWWWVPVVA PPLGAYLGAI IYLIFIGSSI QQEPQILETP STYEDRRTPV 301 350 ENSP00000297988/1-342 LPKMGSHEPT ISPLTPVSVS PANRSSVHPA PPLHESMALE HF ENSBTAP00000026782/1-330 LPKTTSHQHG VASLTPVSVY PEDRPS---- -------ALY HP ENSTTRP00000010030/1-338 LPKTTSHTPV TSSLTPVSV- PDNRPS--PV PPLIDSICLE HL bmy_05677T0/1-291 ---------- ---------- ---------- ---------- -- BACU006653/1-318 LPKTMSHPPM TSSLTPVSVS PDNRPS---- -------VLS HP