KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:15 2014 Check: 00 .. Name: ENSTTRP00000010379/1-727 Len: 770 Check: 349 Weight: 1.00 Name: ENSP00000305653/1-739 Len: 770 Check: 1974 Weight: 1.00 Name: ENSBTAP00000026785/1-732 Len: 770 Check: 1636 Weight: 1.00 Name: bmy_05470T0/1-471 Len: 770 Check: 7942 Weight: 1.00 Name: BACU009130/1-699 Len: 770 Check: 9756 Weight: 1.00 // 1 50 ENSTTRP00000010379/1-727 MASILLRSCR G-RGPARLPP PR-------- ---------- --AAAPRXXX ENSP00000305653/1-739 MASILLRSCR G-RAPARLPP PP-------- ---------- -RYTVPRGSP ENSBTAP00000026785/1-732 MASILLRSCR G-RGPARLPP PR-------- ---------- --SAAPRGPA bmy_05470T0/1-471 MAAILLRSCR G-RGPACLPP PR-------- ---------- --AAAPRGRV BACU009130/1-699 MGK-----CR GLRTARKLHS HRQDQKWHDK QYKKAHLGTA LKANPFGGRA 51 100 ENSTTRP00000010379/1-727 XXXXXXXXXX XXXXXXXXKL LFGGCSPIHP VYLSLRGDPL GCWTLRPKHT ENSP00000305653/1-739 GDPAHLSCAS TLGLRNCLNV PFGCCTPIHP VYTSSRGDHL GCWALRPECL ENSBTAP00000026785/1-732 GDLACLSGAS AVGLMSYVPL PLGSCAPVHP VYLSLRADPL GCWTLRPKRA bmy_05470T0/1-471 GDCACLSCAS TAGLTSCVKL PFGGCSPVHP VCLSVRGDPL GRWALRPRHT BACU009130/1-699 GDGACLSCAS TAGLTGCVRL PFGGCSPVHP VCLSSRGDPL GRWALRPRHT 101 150 ENSTTRP00000010379/1-727 CV-------- -----VVAGP RLLPVRCWHS SPPLGDDSVV EKSLRSLKDK ENSP00000305653/1-739 RIVSRAPWTS TSVGFVAVGP QCLPVRGWHS SRPVRDDSVV EKSLKSLKDK ENSBTAP00000026785/1-732 CA-------- -----VLAGP RLLPVRCWHS SRPLGDDSVV EKSLRSLKDK bmy_05470T0/1-471 CV-------- -----VVAGP RLVPVRCWRS SPPLGDDSVV EKSLRSLKDK BACU009130/1-699 CV-------- -----VVAAP RFLPVRCWRS SPPLGDDSVV EKSLRSLKDK 151 200 ENSTTRP00000010379/1-727 SKKLEEGGPV YSPPAEAAVR KPLGQRVLDE LKHYYHGFRL LWIDTKIAAR ENSP00000305653/1-739 NKKLEEGGPV YSPPAEVVVK KSLGQRVLDE LKHYYHGFRL LWIDTKIAAR ENSBTAP00000026785/1-732 NKKLEEGGPV YSPPAQAAVR KPLGQRVLDE LRHYYHGFRL LWIDTKIAAR bmy_05470T0/1-471 NKKLEEGGPV YSPPAEAAGR TPLGQRVLDE LKHYYHGFRL LWIDTKIAAR BACU009130/1-699 NKKLEEGGPV YSPPAEAAGR TPLGQRALGE LKHYYHGFRL LWTDTKIAAR 201 250 ENSTTRP00000010379/1-727 MLWRILHGHS LTRRERRQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000305653/1-739 MLWRILNGHS LTRRERRQFL RICADLFRLV PFLVFVVVPF MEFLLPVAVK ENSBTAP00000026785/1-732 MLWRILHGHS LTRRERRQFL RICADLFRLV PFLVFVVVPF MEFLLPVAVK bmy_05470T0/1-471 TLWRILHGHS LTRRERRQFL RICADLFRLV PFLVFVVVPF MEFLLPVAVK BACU009130/1-699 TLWRILHGHS LSRRERRQFL RICADLFRLV PFLVFVVVPF MEFLLPVVVK 251 300 ENSTTRP00000010379/1-727 XXXXXXXXXX XXXXXXEERL KKELRVKLEL AKFLQDTIEE MALKNKAAKG ENSP00000305653/1-739 LFPNMLPSTF ETQSLKEERL KKELRVKLEL AKFLQDTIEE MALKNKAAKG ENSBTAP00000026785/1-732 LFPNMLPSTF ETQSSKEERL KKELRVKLEL AKFLQDTIEE MALKNKAAKG bmy_05470T0/1-471 LFPNMLPSTF ETQSIKEERL KKQLRVKLEL AKFLQDTIEE MALKNKAAKG BACU009130/1-699 LFPNMLPSTF ETQSIKEERL KKQLRVKLEL AKFLQDTIEE MALKNKAAKG 301 350 ENSTTRP00000010379/1-727 DATKDFAMFF QKIRETGERP SNEEIMRFSK LFEDELTLDN LTRLQLVALC ENSP00000305653/1-739 SATKDFSVFF QKIRETGERP SNEEIMRFSK LFEDELTLDN LTRPQLVALC ENSBTAP00000026785/1-732 SATKDFSVFF QKIRETGERP SNEEIMRFSK LFEDELTLDN LTRPQLVALC bmy_05470T0/1-471 NATKDFSVFF QKIRETGERP SNEEIMRFSK LFEDELTLDN LTRLQLVALC BACU009130/1-699 NATKDFSVFF QKIRETGERP SNEEIMRFSK LFEDELTLDN LTRLQLVALC 351 400 ENSTTRP00000010379/1-727 KLLELQSMGT NNFLRFQLTM RLRSIKADDK LIAEEGVDSL NVKELQAACR ENSP00000305653/1-739 KLLELQSIGT NNFLRFQLTM RLRSIKADDK LIAEEGVDSL NVKELQAACR ENSBTAP00000026785/1-732 KLLELQSIGT NNFLRFQLTM RLRSIKADDK LIAEEGVDSL NVKELQAACR bmy_05470T0/1-471 KLLELQTMGT NNFLRFQLTM RLRSIKADDK LIAEEGVDSL NVKELQAACR BACU009130/1-699 KLLELQSMGT NNFLRFQLTM RLRSIKADDK LIAEEGVDSL NVKELQAACR 401 450 ENSTTRP00000010379/1-727 ARGMRALGVT EDRLRGQLKQ WLELHLHQEI PTSLLILSRA MYLPDTLSPA ENSP00000305653/1-739 ARGMRALGVT EDRLRGQLKQ WLDLHLHQEI PTSLLILSRA MYLPDTLSPA ENSBTAP00000026785/1-732 ARGMRALGVT EDRLRGQLKQ WLELHLHQEI PTSLLILSRA MYLPETLSPA bmy_05470T0/1-471 ARGMRALGVT EDRLRDQLKQ WLELHLHQEV PTSLLVLSRA MYLPDTLSPA BACU009130/1-699 ARGMRALGVT EDRLRDQLKQ WLELHLHQEV PTSLLVLSRA MYLPDTLSPA 451 500 ENSTTRP00000010379/1-727 DQLKSTLQTL PEIVAKEAQV KVAEVEGEQV DNKAKLEATL QEEAAIQQEH ENSP00000305653/1-739 DQLKSTLQTL PEIVAKEAQV KVAEVEGEQV DNKAKLEATL QEEAAIQQEH ENSBTAP00000026785/1-732 DQLKSTLQTL PEIVAKEAQV KVAEVEGEQV DNKAKLEATL QEEAAIQQEH bmy_05470T0/1-471 DQLTSTLQTL PEIVVRVACC EA-------- ---------- ---------- BACU009130/1-699 DQLTSTLQTL PEIV------ ---------- ---------- ---------- 501 550 ENSTTRP00000010379/1-727 REKELQRRSQ AA-----KEV EPEVVAEGAP GRLVVEPQPE VPDVTLPSEA ENSP00000305653/1-739 REKELQKRSE VA-----KDF EPERVV-AAP QRPGTEPQPE MPDTVLQSET ENSBTAP00000026785/1-732 REKELQRKSQ AAVAQAAKEV EPEVVAEGAP GRPVAELQPE EPAVTLPSEV bmy_05470T0/1-471 ---------- ---------- ---------- ---------- -PSAAHSAGA BACU009130/1-699 ---------- -------KEV EPEVVAEGAP GRLVAEPQPE KPDVTLPSEA 551 600 ENSTTRP00000010379/1-727 LTDSAPVLEG LKEEEITQEE IDILSDACSK LKGQKKSLTK EKEELELLKE ENSP00000305653/1-739 LKDTAPVLEG LKEEEITKEE IDILSDACSK LQEQKKSLTK EKEELELLKE ENSBTAP00000026785/1-732 LKDSAPVLEG LKEEEITQEE IDVLSNACSK LKEQKKSLTK EKEELELLKG bmy_05470T0/1-471 LS----LLGE PSDPPLAPSF LSRLSSAC-- ---------- ---------- BACU009130/1-699 LTDSAPVLEG LKEEEITQEE IDILSDACSK LKGQKKSLTK EKEELELLKE 601 650 ENSTTRP00000010379/1-727 DVQDYSEDLQ EIKKELSKTG KEIYVEESKA SKRLTKRVQQ MIGQIDSLLT ENSP00000305653/1-739 DVQDYSEDLQ EIKKELSKTG EEKYVEESKA SKRLTKRVQQ MIGQIDGLIS ENSBTAP00000026785/1-732 DVQDYSQDLQ EIKKELSKTG EEMYVEESKA SKRLTKRVQQ MIGQMDSLLA bmy_05470T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU009130/1-699 DVQDYSEDLQ EIKKELSKTG KEIYVEESKA SKRLTKRVQQ MIGQIDSLLT 651 700 ENSTTRP00000010379/1-727 QLEADQKAGK LGVAAEGSPA GETVISVAEL ISAMKQIKHI PENKLISLAS ENSP00000305653/1-739 QLEMDQQAGK LAP-ANGMPT GENVISVAEL INAMKQVKHI PESKLTSLAA ENSBTAP00000026785/1-732 QLEADQKAGR LGPAAEAAPA GETVISVSEL INAMKQIKHI PESKLLSLAS bmy_05470T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU009130/1-699 QLEADQKAGR LGPAAEGAPA GETVISVAEL ISAMKQIKHI PESKLVSLAS 701 750 ENSTTRP00000010379/1-727 ALDENKDGKV NIDDLVKVIE LVDKEDIHIS TSQVAEIVAT LGKEEKVEER ENSP00000305653/1-739 ALDENKDGKV NIDDLVKVIE LVDKEDVHIS TSQVAEIVAT LEKEEKVEEK ENSBTAP00000026785/1-732 ALDDNKDGKV DIDDLVKVIE LVDKEDVHIS TSQVAEIVAT LEKEEKVEEK bmy_05470T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU009130/1-699 ALDENKDGKV NIDDLVKVIE LVDKEDIHIS TSQVAEIVAM LGKEEKVEEK 751 800 ENSTTRP00000010379/1-727 EKAKEK---- AEKEAAEVKS ENSP00000305653/1-739 EKAKEK---- AEKEVAEVKS ENSBTAP00000026785/1-732 EKAKEK---- AEKEAAEVQN bmy_05470T0/1-471 ---------- ---------- BACU009130/1-699 EKAKEKAEKE AEKEAAEVKN