KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:17 2014 Check: 00 .. Name: ENSP00000323687/1-1292 Len: 1297 Check: 1599 Weight: 1.00 Name: ENSBTAP00000026793/1-1287 Len: 1297 Check: 9978 Weight: 1.00 Name: ENSTTRP00000015090/1-1293 Len: 1297 Check: 1437 Weight: 1.00 Name: BACU011541/1-1192 Len: 1297 Check: 6398 Weight: 1.00 Name: bmy_13777T0/1-1142 Len: 1297 Check: 2312 Weight: 1.00 // 1 50 ENSP00000323687/1-1292 MADPAAPTPA APAPAQAPAP APEAVPAPAA APVPAPAPAS DSASGPSSDS ENSBTAP00000026793/1-1287 MADPAASAPA APAPAQIPDV PPSPDAAPAS A--PAPASAA DSGSGPSSDS ENSTTRP00000015090/1-1293 MADPAAPAPA VSAPAQVPDT APDETSAPDA APAPAPAPAP DSASGPSSDS BACU011541/1-1192 ---------- --------MD SRKGLARATA SRPPSPTPLP GA-------- bmy_13777T0/1-1142 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000323687/1-1292 GPEAGSQRLL FSHDLVSGRY RGSVHFGLVR LIHGEDSDSE GEEEGRGSSG ENSBTAP00000026793/1-1287 GPEAGSQRLL FSHDLVSGRY RGSVHFGLVR LIHGEDSDSE GEEEGRGSSG ENSTTRP00000015090/1-1293 GPEAGSQRLL FSHDLVSGRY RGSVHFGLVR LIHGEDSDSE GEEEGRGSSG BACU011541/1-1192 ---------- ---------- ---------R LGLADSASLP PETVGAGTR- bmy_13777T0/1-1142 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000323687/1-1292 CSEAGGAGHE EGRASPLRRG YVRVQWYPEG VKQHVKETKL KLEDRSVVPR ENSBTAP00000026793/1-1287 CSEAGGAGHE EGRASPLRRG YVRVQWYPEG VKQHVKETKL KLEDRSVVPR ENSTTRP00000015090/1-1293 CSEAGGAGHE EGRASPLRRG YVRVQWYPEG VKQHVKETKL KLEDRSVVPR BACU011541/1-1192 ---------- ---------- ---------- --------IL KLEDRSVVPR bmy_13777T0/1-1142 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000323687/1-1292 DVVRHMRSTD SQCGTVIDVN IDCAVKLIGT NCIIYPVNSK DLQHIWPFMY ENSBTAP00000026793/1-1287 DVVRHMRSTD SQCGTVIDVN IDCAVKLIGT NCIVYPVNSK DLQHIWPFMY ENSTTRP00000015090/1-1293 DVVRHMRSTD SQCGTVIDVN IDCAVKLIGT NCIVYPVNSK DLQHIWPFMY BACU011541/1-1192 DVVRHMRSTD SQCGTVIDVN IDCAVKLIGT NCIVYPVNSK DLQHIWPFMY bmy_13777T0/1-1142 -----MRSTD SQCGTVIDVN IDCAVKLIGT NCIVYPVNSK DLQHIWPFMY 201 250 ENSP00000323687/1-1292 GDYIAYDCWL GKVYDLKNQI ILKLSNGARC SMNTEDGAKL YDVCPHVSDS ENSBTAP00000026793/1-1287 GDYIAYDCWL GKVYDLKNQI ILKLSNGARC SMNTEDGAKL YDVCPHVSDS ENSTTRP00000015090/1-1293 GDYIAYDCWL GKVYDLKNQI ILKLSNGARC SMNTEDGAKL YDVCPHVSDS BACU011541/1-1192 GDYIAYDCWL GKVYDLKNQI ILKLSNGARC SMNTEDGAKL YDVCPHVSDS bmy_13777T0/1-1142 GDYIAYDCWL GKVYDLKNQI ILKLSNGARC SMNTEDGAKL YDVCPHVSDS 251 300 ENSP00000323687/1-1292 GLFFDDSYGF YPGQVLIGPA KIFSSVQWLS GVKPVLSTKS KFRVVVEEVQ ENSBTAP00000026793/1-1287 GLFFDDSYGF YPGQVLIGPA KIFSSVQWLS GVKPVLSTKS KFRVVVEEVQ ENSTTRP00000015090/1-1293 GLFFDDSYGF YPGQVLIGPA KIFSSVQWLS GVKPVLSTKS KFRVLVEEVQ BACU011541/1-1192 GLFFDDSYGF YPGQVLIGPA KIFSSVQWLS GVKPVLSTKS KFRVLVEEVQ bmy_13777T0/1-1142 GLFFDDSYGF YPGQVLIGPA KIFSSVQWLS GVKPVLSTKS KFRVLVEEVQ 301 350 ENSP00000323687/1-1292 VVELKVTWIT KSFCPGGTDS VSPPPSVITQ ENLGRVKRLG CFDHAQRQLG ENSBTAP00000026793/1-1287 VVELKVTWIT KSFCPGGTDS VSPPPSVITQ ENLGRVKRLG CFDHAQRQLG ENSTTRP00000015090/1-1293 VVELKVTWIT KSFCPGGTDS VSPPPSVITQ ENLGRVKRLG CFDHAQRQLG BACU011541/1-1192 VVELKVTWIT KSFCPGGTDS VSPPPSVITQ ENLGRVKRLG CFDHAQRQLG bmy_13777T0/1-1142 VVELKVTWIT KSFCPGGTDS VSPPPSVITQ ENLGRVKRLG CFDHAQRQLG 351 400 ENSP00000323687/1-1292 ERCLYVFPAK VEPAKIAWEC PEKNCAQGEG SMAKKVKRLL KKQVVRIMSC ENSBTAP00000026793/1-1287 ERCLYVFPAK VEPAKIACEC PEKHCAQGEG SVAKKVKRLL KKQLVRITSC ENSTTRP00000015090/1-1293 ERCLYVFPAK VEPARIACEC PEKHCAQGEG SVAKKVKRLL KKQVVRIMSC BACU011541/1-1192 ERCLYVFPAK VEPAKIACEC PEKHCAQGEG SMAKKVKRLL KKQVVRIMSC bmy_13777T0/1-1142 ERCLYVFPAK VEPAKIACEC PEKHCAQGEG SMAKKVKRLL KKQVVRIMSC 401 450 ENSP00000323687/1-1292 SPDTQCSRDH SMEDPDKKGE SKTKSEAESA SPEETPDGSA SPVEMQDEGA ENSBTAP00000026793/1-1287 SPDVQCSRDH SMEDAGKKGA AKAKSETGSA SPEETPDGSS SPVEMQDEGP ENSTTRP00000015090/1-1293 SPDSRCSRDH SVEDTGKKGA AKAKSEAGSA SPEETPDGSA SPVEMQDEGP BACU011541/1-1192 SPDSQCSRDH SMEDTGKKGA AKAKSEAGSA SPEETPDGSA SPVEMQDEGP bmy_13777T0/1-1142 SPDSQCSRDH SMEDTGKKGA AKAKSEAGSA SPEETPDGSA SPVEMQDEGP 451 500 ENSP00000323687/1-1292 EEPHEAGEQL PPFLLKEGRD DRLHSAEQDA DDEAADDTDD TSSVTSSASS ENSBTAP00000026793/1-1287 EEAHEAGEQL PPFLLKEGGD DRLHSAEQDA DDEAADDTDD TSSVTSSASS ENSTTRP00000015090/1-1293 EEAHEGGEQL PPFLLKEGGD DRLHSAEQDA DDEAADDTDD SSSVTSSASS BACU011541/1-1192 EEAHE----- ------EGGD DRLHSAEQDA DDEAADDTDD TSSVTSSASS bmy_13777T0/1-1142 EEAHEVGEQL PPFLLKEGGD DRLHSAEQDA DDEAADDTDD TSSVTSSASS 501 550 ENSP00000323687/1-1292 TTSSQSGSGT SRKKSIPLSI KNLKRKHKRK KNKITRDFKP GDRVAVEVVT ENSBTAP00000026793/1-1287 TTSSQSGSGT SRKKSIPLSI KNLKRKHKRK KNKITRDFKP GDRVAVEVVT ENSTTRP00000015090/1-1293 TTSSQSGSGA GRKKSIPLSI KNLKRKHKRK KNKISRDFKP GDRVAVEVVT BACU011541/1-1192 TTSSQSGSGT GRKKSIPLSI KNLKRKHKRK KNKITRDFKP GDRVAVEVVT bmy_13777T0/1-1142 TTSSQSGSGT GRKKSIPLSI KNLKRKHKRK KNKITRDFKP GDRVAVEVVT 551 600 ENSP00000323687/1-1292 TMTSADVMWQ DGSVECNIRS NDLFPVHHLD NNEFCPGDFV VDKRVQSCPD ENSBTAP00000026793/1-1287 TMTSADVMWQ DGSVECNIRS NDLFPVHHLD NNEFCPGDFV VDKRVQSCPD ENSTTRP00000015090/1-1293 TMTSADVMWQ DGSVECNVRS NDLFPVHHLD NNEFCPGDFV VDKRVQSCPD BACU011541/1-1192 TMTSADVMWQ DGSVECNVRS NDLFPVHHLD NNEFCPGDFV VDKRVQSCPD bmy_13777T0/1-1142 TMTSADVMWQ DGSVECNVRS NDLFPVHHLD NNEFCPGDFV VDKRVQSCPD 601 650 ENSP00000323687/1-1292 PAVYGVVQSG DHIGRTCMVK WFKLRPSGDD VELIGEEEDV SVYDIADHPD ENSBTAP00000026793/1-1287 PAVYGVVQSG DHVGRTCMVK WFKLRPSGDD VELIGEEEDV SVYDIADHPD ENSTTRP00000015090/1-1293 PAVYGVVQSG DHVGRTCMVK WFKLRPSGDD VELIGEEEDV SVYDIADHPD BACU011541/1-1192 PAVYGVVQSG DHVGRTCMVK WFKLRPSGDD VELIGEEEDV SVYDIADHPD bmy_13777T0/1-1142 PAVYGVVQSG DHVGRTCMVK WFKLRPSGDD VELIGEEEDV SVYDIADHPD 651 700 ENSP00000323687/1-1292 FRFRTTDIVI RIGNTEDGAP HKEDEPSVGQ VARVDVSSKV EVVWADNSKT ENSBTAP00000026793/1-1287 FRFRTTDIVI RIGNAEDGAP HKEDEPSVGQ VARVDVSSKV EVVWADNSKT ENSTTRP00000015090/1-1293 FRFRTTDIVI RIGNTEDGGP HREDEPSVGQ VARVDVSSKV EVVWADNSKT BACU011541/1-1192 FRFRTTDIVI RIGNTEDGGP HREDEPSVGQ VARVDVSSKV EVVWADNSKT bmy_13777T0/1-1142 FRFRTTDIVI RIGNTEDGGP HREDEPSVGQ VARVDISSKV EVVWADNSKT 701 750 ENSP00000323687/1-1292 IILPQHLYNI ESEIEESDYD SVEGSTSGAS SDEWEDDSDS WETDNGLVED ENSBTAP00000026793/1-1287 IILPQHLYNI ESEIEESDYD SVEGSTSGAS SDEWEDDSDS WETDNGLVED ENSTTRP00000015090/1-1293 IILPQHLYNI ESEIEESDYD SVEGSTSGAS SDEWEDDSDS WETDNGLVED BACU011541/1-1192 IILPQHLYNI ESEIEESDYD SVEGSTSGAS SDEWEDDSDS WETDNGLVED bmy_13777T0/1-1142 IILPQHLYNI ESEIEESDYD SVEGSTSGAS SDEWEDDSDS WETDNGLVED 751 800 ENSP00000323687/1-1292 EHPKIEEPPI PPLEQPVAP- EDKGVVISEE AATAAVQGAV AMAAPMAGLM ENSBTAP00000026793/1-1287 EHPKIEEPPI PTAEQPAAPE EDKGVVISEE AATAAIQGAV AMAAPVAGLM ENSTTRP00000015090/1-1293 EHPKIEEPPI PATEQPAAPE EDKGVVISEE AATAAIQGAV AMATPVAGLM BACU011541/1-1192 EHPKIEEPPI PAAEPPAAPE EDKGVLISEE AATAAIQGAV AMASPVAGLM bmy_13777T0/1-1142 EHPKIEEPPI PAAEPPAAPE EDKGVLISEE AATAAIQGAV AMASTVAGLM 801 850 ENSP00000323687/1-1292 EKAGKDGPPK SFRELKEAIK ILESLKNMTV EQLLTGSPTS PTVEPEKPTR ENSBTAP00000026793/1-1287 EKAGKDGPPK SFRELKEAIK ILESLKNMTV EQLLTGSPTS PTAEPEKPTR ENSTTRP00000015090/1-1293 EKAGKDGPPK SFRELKEAIK ILESLKNMTV EQLLTGSPTS PTAEPEKPTR BACU011541/1-1192 EKAGKDGPPK SFRELKEAIK ILESLKNMTV EQLLTGSPTS PTAEPEKPTR bmy_13777T0/1-1142 EKAGKDGPPK SFRELKEAIK ILESLKNMTV EQLLTGSPTS PTAEPEKPTR 851 900 ENSP00000323687/1-1292 EKKFLDDIKK LQENLKKTLD NVAIVEEEKM EAVPDVERKE DKPEGQSPVK ENSBTAP00000026793/1-1287 EKKFLDDIKK LQENLKKTLD NVAIAEEEKM EAVPETERKE DKPEGQSPVK ENSTTRP00000015090/1-1293 EKKFLDDIKK LQENLKKTLD NVAIAEEEKM EAVPDTERKE DKPEGQSPVK BACU011541/1-1192 EKKFLDDIKK LQENLKKTLD NVAIVEEEKM EAVPDTERKE DKPEGQSPVK bmy_13777T0/1-1142 EKKFLDDIKK LQENLKKTLD NVAIAEEEKM EAVPDTERKE DKPEGQSPVK 901 950 ENSP00000323687/1-1292 AEWPSETPVL CQQCGGKPGV TFTSAKGEVF SVLEFAPSNH SFKKIEFQPP ENSBTAP00000026793/1-1287 AEWPSETPVL CQQCGGKPGV TFTSAKGEVF SVLEFAPSNH SFKKIEFQPP ENSTTRP00000015090/1-1293 AEWPSETPVL CQQCGGKPGV TFTSAKGEVF SVLEFAPSNH SFKKIEFQPP BACU011541/1-1192 AEWPSETPVL CQQCGGKPGV TFTSAKGEVF SVLEFAPSNH SFKKIEFQPP bmy_13777T0/1-1142 AEWPSETPVL CQQCGGKPGV TFTSAKGEVF SVLEFAPSNH SFKKIEFQPP 951 1000 ENSP00000323687/1-1292 EAKKFFSTVR KEMALLATSL PEGIMVKTFE DRM----DLF SALIKGPTRT ENSBTAP00000026793/1-1287 EAKKFFSTVR KEMALLATSL PDGIMVKTFE DRM----DLF SALIKGPTRT ENSTTRP00000015090/1-1293 EAKKFFSTVR KEMALLATSL PDGIMVKTFE DRM----DLF SALIKGPTRT BACU011541/1-1192 EAKKFFSTVR KEMALLATSL PDGIMVKTFE DRMASSLDLF SALIRGPTRT bmy_13777T0/1-1142 EAKKFFSTVR KEMALLATSL PDGIMVKTFE DRMASSLDLF SALIRGPTRT 1001 1050 ENSP00000323687/1-1292 PYEDGLYLFD IQLPNIYPAV PPHFCYLSQC SGRLNPNLYD NGKVCVSLLG ENSBTAP00000026793/1-1287 PYEDGLYLFD IQLPNIYPAV PPHFCYLSQC SGRLNPNLYD NGKVCVSLLG ENSTTRP00000015090/1-1293 PYEDGLYLFD IQLPNIYPAV PPHFCYLSQC SGRLNPNLYD NGKVCVSLLG BACU011541/1-1192 PYEDGLYLFD IQLPNIYPAV PPHFCYLSQC SGRLNPNLYD NGKVCVSLLG bmy_13777T0/1-1142 PYEDGLYLFD IQLPNIYPAV PPHFCYLSQC SGRLNPNLYD NGKVCVSLLG 1051 1100 ENSP00000323687/1-1292 TWIGKGTERW TSKSSLLQVL ISIQGLILVN EPYYNEAGFD SDRGLQEGYE ENSBTAP00000026793/1-1287 TWIGKGTERW TSKSSLLQVL ISIQGLILVN EPYYNEAGFD SDRGLQEGYE ENSTTRP00000015090/1-1293 TWIGKGTERW TSKSSLLQVL ISIQGLILVN EPYYNEAGFD SDRGLQEGYE BACU011541/1-1192 TWIGKGTERW TSKSSLLQVL ISIQGLILVN EPYYNEAGFD SDRGLQEGYE bmy_13777T0/1-1142 TWIGKGTERW TSKSSLLQVL ISIQGLILVN EPYYNEAGFD SDRGLQEGYE 1101 1150 ENSP00000323687/1-1292 NSRCYNEMAL IRVVQSMTQL VRRPPEVFEQ EIRQHFSTGG WRLVNRIESW ENSBTAP00000026793/1-1287 NSRCYNEMAL IRVVQSMTQL VRRPPEVFEQ EIRQHFSTGG WRLVNRIESW ENSTTRP00000015090/1-1293 NSRCYNEMAL IRVVQSMTQL VRRPPEVFEQ EIRQHFGTGG WRLVNRIESW BACU011541/1-1192 NSRCYNEMAL IRVVQSMTQL VRRPPEVFEQ EIRQHFSTGG WRLVNRIESW bmy_13777T0/1-1142 NSRCYNEMAL IRVVQSMTQL VRRPPEVFEQ EIRQHFSTGG WRLVNRIESW 1151 1200 ENSP00000323687/1-1292 LETHALLEKA QALPNGVPKA SSSPEPPAVA ELSDSGQQEP EDGGPAPGEA ENSBTAP00000026793/1-1287 LETHALLERA QALPNGLPKD SSSPEPPAVA ELSDFGREEP EDGGLAPGEA ENSTTRP00000015090/1-1293 LETHALLERA QALPNGLPKD SSSPEPPAVA ELSDYGREEP EDGGLAPGEA BACU011541/1-1192 LETHTLLEGA QALPNGLPKD SSSPEPPAVA ELSDYGREEP EDGGLAPGEA bmy_13777T0/1-1142 LETHTLLEGA QALPNGLPKD SSSPEPPAVA ELSDYGREEP EDGGLAPGEG 1201 1250 ENSP00000323687/1-1292 SQGSDSEGGA QGLASASRDH TDQTSETAPD ASVPPSVKPK KRRKSYRSFL ENSBTAP00000026793/1-1287 SQGSDSE--- -GPASAPRDR TEQASEAPPD ASVPPSVKPK KRRKSYRSFL ENSTTRP00000015090/1-1293 SQGSDSEGGA QGPASASRDR TDQTSEAAPD ASVPPSVKPK KRRKSYRSFL BACU011541/1-1192 SQGSDSEGGV QGPASASRDR TDQTSEAAPD ASGPPSVKPK KRRKSYRSFL bmy_13777T0/1-1142 SQGSDSEGGA QGPASASRDR TDQTSEAAPD ASGPPSVKPK KRRKSYRSFL 1251 1300 ENSP00000323687/1-1292 PEKSGYPDIG FPLFPLSKGF IKSIRGVLTQ FRAALLEAGM PECTEDK ENSBTAP00000026793/1-1287 PEKSGYPDLG FPLFPLSKGF VKSIRGVLMQ FRAALTEAGM PESAGDK ENSTTRP00000015090/1-1293 PEKSGYPDIG FPLFPLSKGF IKSIRGVLTQ FRAALMEAGM PESLEDK BACU011541/1-1192 PEKSGYPDIG FPLFPLSKGF IKSIRGVLMQ FRAALMEAGM PESVEDK bmy_13777T0/1-1142 PEKSGYPDIG FPLFPLSKGF IKSIRGVLTQ FRAALMEAGM PESVEDK