KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:18 2014 Check: 00 .. Name: ENSTTRP00000006476/1-762 Len: 817 Check: 6470 Weight: 1.00 Name: ENSP00000463069/1-783 Len: 817 Check: 7076 Weight: 1.00 Name: ENSBTAP00000026797/1-783 Len: 817 Check: 7918 Weight: 1.00 Name: bmy_03549T0/1-699 Len: 817 Check: 8379 Weight: 1.00 Name: BACU006258/1-817 Len: 817 Check: 2291 Weight: 1.00 // 1 50 ENSTTRP00000006476/1-762 MSGGHQLQLA ALWPWLLMAT LQAGFGRTGL VLAAAVESER SAEQKAIIRV ENSP00000463069/1-783 MSGGHQLQLA ALWPWLLMAT LQAGFGRTGL VLAAAVESER SAEQKAIIRV ENSBTAP00000026797/1-783 MSGGHQLQLA ALWPWLLMAT LQAGFGRTGL VLAAAVESER SAEQKAIIRV bmy_03549T0/1-699 ---------- ---------- ---------- ---------- ---------- BACU006258/1-817 MSGGHQLQLA ALWPWLLMAT LQAGFGRTGL VLAAAVESER SAEQKAIIRV 51 100 ENSTTRP00000006476/1-762 IPLKMDPTGK LNLTLEGVFA GVAEITPAEG KLMQSHPLYL CNASDDDNLE ENSP00000463069/1-783 IPLKMDPTGK LNLTLEGVFA GVAEITPAEG KLMQSHPLYL CNASDDDNLE ENSBTAP00000026797/1-783 IPLKMDPTGK LNLTLEGVFA GVAEITPAEG KLMQSHPLYL CNASDDDNLE bmy_03549T0/1-699 ---------- ---------- ---------- ----SHPLYL CNASDDDNLE BACU006258/1-817 IPLKMDPTGK LNLTLEGVFA GVADITPAEG KLMQSHPLYL CNASDDDNLE 101 150 ENSTTRP00000006476/1-762 PGFISIVKLE SPQRAPRPCL SLASKARMAG ERGASAVLFD ITEDRAAAEQ ENSP00000463069/1-783 PGFISIVKLE SPRRAPRPCL SLASKARMAG ERGASAVLFD ITEDRAAAEQ ENSBTAP00000026797/1-783 PGFISIVKLE SPQRAPRPCL SLASKARMAG ERGASAVLFD ITEDRAAAEQ bmy_03549T0/1-699 PGFISIVKLE SPQRAPRPCL SLASKARMAG ERGASAVLFD ITEDRAAAEQ BACU006258/1-817 PGFISIVKLE SPQRAPRPCL SLASKARMAG ERGASAVLFD ITEDRAAAEQ 151 200 ENSTTRP00000006476/1-762 LQQPLGLTWP VVLIWGNDAE KLMEFVYKNR KAHVRIELKK STTSPDYDVW ENSP00000463069/1-783 LQQPLGLTWP VVLIWGNDAE KLMEFVYKNQ KAHVRIELKE PPAWPDYDVW ENSBTAP00000026797/1-783 LQQPLGLTWP VVLIWGHDAE KLMEFVYKNR KAHVRIELKE PPTWPDYDVW bmy_03549T0/1-699 LQQPLGLTRP VVLIWGNDAE KLMEFVYKNR KAYVRIELKE PPTWPDYDVW BACU006258/1-817 LQQPLGLTRP VVLIWGNDAE KLMEFVYKNR KAYVRIELKE PPTWPDYDVW 201 250 ENSTTRP00000006476/1-762 ILLTV----- ---------- -------GED LLQQRTAWAI SQLATRRYQP ENSP00000463069/1-783 ILMTVVGTIF VIILASVLRI RCRPRHSRPD PLQQRTAWAI SQLATRRYQA ENSBTAP00000026797/1-783 ILLTVVGIIF VVILALVLRI RCRPRHSRPD PLQQRTAWAI SQLATRSYRA bmy_03549T0/1-699 ILLTVVGTIF VVILASVLRI RCRPRHNRPD PLQQRTAWAI SQLATRRYQP BACU006258/1-817 ILLTVVGTIF VVILASVLRI RCRPRHSRLD PLQQRTAWAI SQLATRRYQP 251 300 ENSTTRP00000006476/1-762 GCRRARAEWP DSGSSCSSAP VCAICLEEFS EGQELRVISC LHEFHRTCVD ENSP00000463069/1-783 SCRQARGEWP DSGSSCSSAP VCAICLEEFS EGQELRVISC LHEFHRNCVD ENSBTAP00000026797/1-783 GCRGARKEWP DSGSSCSSAP VCAICLEEFS EGQELRVISC LHEFHRTCVD bmy_03549T0/1-699 GCRRARAEWP DSGSSCSSAP VCAICLEEFS EGQELRVISC LHEFHRTCVD BACU006258/1-817 GCRRARAEWP DSGSSCSSAP VCAICLEEFS EDQELRVISC LHEFHRTCVD 301 350 ENSTTRP00000006476/1-762 PWLHQHRTCP LCMFNIVEGD SLSQSLGPSR SYQEPGRRLH LIRQHPGHAH ENSP00000463069/1-783 PWLHQHRTCP LCMFNITEGD SFSQSLGPSR SYQEPGRRLH LIRQHPGHAH ENSBTAP00000026797/1-783 PWLHQHRTCP LCMFNIVEGD SLSQSLGPSR AYQEPGRRLH LIRQHPGHAH bmy_03549T0/1-699 PWLHQHRTCP LCMFNIVEGD SLSQSLGPSR SYQEPGRRLH LIRQHPGHAH BACU006258/1-817 PWLHQHRTCP LCMFNIVEGD SLSQSLGPSR SYQEPGRRLH LIRQHPGHAH 351 400 ENSTTRP00000006476/1-762 YHLPAAYLSG PSRSAAARPT RPGPFLPSQE PGVGPRHHRL PRGAHPRVPG ENSP00000463069/1-783 YHLPAAYLLG PSRSAVARPP RPGPFLPSQE PGMGPRHHRF PRAAHPRAPG ENSBTAP00000026797/1-783 YHLPAAYLLG PSRSAVARPT RPGPFLPSQE PGVGARHHRQ PRTTHPRAPG bmy_03549T0/1-699 YHLPAAYLSG PSRSAAARPT RPGPFLPSQE PGVGPRHHRL PRSTHPXAPG BACU006258/1-817 YHLPAAYLSG PSRSAAARPT RPGPFLPSQE PGVGPRHHRL PRSAHPRAPG 401 450 ENSTTRP00000006476/1-762 EPQRLAVAQS PSAQGWGLSH LRCTLQHPAT CPMPPRRARP HDSSGSGESY ENSP00000463069/1-783 EQQRLAGAQH PYAQGWGLSH LQSTSQHPAA CPVPLRRARP PDSSGSGESY ENSBTAP00000026797/1-783 EPQRLAVAPR PYAPGWGLSH LRCTSQHPAT CPAPPRRTRP HDSSGSGESY bmy_03549T0/1-699 APQRLAVAQS PSAQGWGLSN LRCTLQHPAT CPMPPRRARP HDSSGSGESY BACU006258/1-817 EPQRLAVAQT PSAQGWGLSH LRCTLQHPAT CPMPPRRARP HDSSGSGESY 451 500 ENSTTRP00000006476/1-762 CTERSGYLAD GPASDSSSGP CHGSSSDSVV NCTDISLQGI HGSSSTFRSS ENSP00000463069/1-783 CTERSGYLAD GPASDSSSGP CHGSSSDSVV NCTDISLQGV HGSSSTFCSS ENSBTAP00000026797/1-783 RTERSGYLAD GPASDSSSGP CHGSSSDSVV NCTDVSLQGI HGSSSTFRSS bmy_03549T0/1-699 CTEHSGYLAD GPASDSSSGP CHGSSSDSVV NCTDISLQGI HGSSSTFRSS BACU006258/1-817 CTEHSGYLAD GPASDSSSGP CHGSSSDSVV NCTDISLQGI HGSSSTFRSS 501 550 ENSTTRP00000006476/1-762 LSSDFDPLVY CSPEWERRRE EAQPSMTSRP RSLDSVVPTG ET-VSSHVHY ENSP00000463069/1-783 LSSDFDPLVY CSPKGDPQRV DMQPSVTSRP RSLDSVVPTG ETQVSSHVHY ENSBTAP00000026797/1-783 LSSDFDPLVY CSPEGEPPGK AAQPSMASRP RSLDSVVPVG ETQVSSHIHY bmy_03549T0/1-699 LSSDFDPLVY CSPEGEHRGE EAQPSMTSRP RSLDSVVPTG ETQVSSHVHY BACU006258/1-817 LSSDFDPLVY CSPEGERRAE EAQPSMASRP RSLDSVVPTG ETQVSSHVHY 551 600 ENSTTRP00000006476/1-762 HRHRAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000463069/1-783 HRHRHHHYKK RFQWHGRKPG PETGVPQSRP PIPRTQPQPE PPSPDQQVTR ENSBTAP00000026797/1-783 HRHRHHHYRR RFRWHGRKAD PETAVPPSRP AVPRTQLQPE PPSPDLHATR bmy_03549T0/1-699 HRHRHHHYKK RFQWHGRKSG PETGVPQSRP AIPRTQLQPE LPSPDPQAAR BACU006258/1-817 HRHRHHHYKK RFQWHGRKSG PETGVPQPRP AIPRTQLQPE LPSPDPQAAR 601 650 ENSTTRP00000006476/1-762 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000463069/1-783 SNSAAPSGRL SNPQCPRALP EPAPGPVDAS SICPSTSSLF NLQKSSLSAR ENSBTAP00000026797/1-783 CSPAALSGQP PAPQRPRALT EPAPGPPDAS SSSPAASSLF HLQKSSLSVR bmy_03549T0/1-699 SNPAAPSGQL PNPQRPRALT EPAPGPADAS SPSPGPSSLF HLQKSSLSVR BACU006258/1-817 PNPAAPSGQL PNPQRPRALT EPAPGPADAS SPSPGPSSLF HLQKSSLSVR 651 700 ENSTTRP00000006476/1-762 XXXXXXXXXX X--------- ---------- ---------- ---XXXXXXX ENSP00000463069/1-783 HPQRKRRGG- ---------- ---------- ---------- ---PSEPTPG ENSBTAP00000026797/1-783 HPQRRRRGG- ---------- ---------- ---------- ---PLEPTPA bmy_03549T0/1-699 HTQRKRRGS- ---------- ---------- ---------- ---PSEPSPA BACU006258/1-817 HTQRKRRGGP PEPSPASRPQ DLTAHRVCQI LPHYGPKRKR RGSPSEPSPA 701 750 ENSTTRP00000006476/1-762 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000463069/1-783 SRPQDATVHP ACQIFPHYTP SVAYPWSPEA HPLICGPPGL DKRLLPETPG ENSBTAP00000026797/1-783 SRSQDLTTHP TCQIFPHYGP SLAHPWSPEA HPLFFGHPGL ERRLLPEAPG bmy_03549T0/1-699 SRPQDLTAHR VCQILPHYGP SLAYPWSPEA HPLIFGPPGP DRRLLPETPG BACU006258/1-817 SRPQDLTAHR VCQILPHYGP SLAYPWSPEA HPLIFGPPGP DRRLLPETPG 751 800 ENSTTRP00000006476/1-762 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000463069/1-783 PCYSNSQPVW LCLTPRQPLE PHPPGEGPSE WSSDTAEGRP CPYPHCQVLS ENSBTAP00000026797/1-783 PTYPSSQPVW LCLTPRQALG PHPSGEGPSA WSSGNPEGRP CPYPHCQVLP bmy_03549T0/1-699 PTYPSSQPVW LCLTTRQPLG PHPSGEGPSE WSSGTPEGRP CPYPHCQVLP BACU006258/1-817 PTYPSSQPVW LCLTTRQPPG PYPSGEGPSE WSSGTPGGRP WPYPHCQVLP 801 850 ENSTTRP00000006476/1-762 XXXSEEEELE ELCEQAV ENSP00000463069/1-783 AQPGSEEELE ELCEQAV ENSBTAP00000026797/1-783 AQPGTEEELE ELCEQAV bmy_03549T0/1-699 AQPGSEDELE ELCEQAV BACU006258/1-817 AQTGSEDELE ELCEQAV