KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:19 2014 Check: 00 .. Name: ENSP00000334808/1-823 Len: 827 Check: 9733 Weight: 1.00 Name: ENSBTAP00000026801/1-826 Len: 827 Check: 676 Weight: 1.00 Name: bmy_09515T0/1-808 Len: 827 Check: 8528 Weight: 1.00 Name: ENSTTRP00000006348/1-822 Len: 827 Check: 2584 Weight: 1.00 Name: BACU005041/1-726 Len: 827 Check: 5250 Weight: 1.00 // 1 50 ENSP00000334808/1-823 MGKKRTKGKT VPIDDSSETL EPVCRHIRKG LEQGNLKKAL VNVEWNICQD ENSBTAP00000026801/1-826 MGKKRTKGKT VPIDDSSESL EPVCRHIRKG LEQGNLKKAL VNVEWNICQD bmy_09515T0/1-808 MGKKRTKGKT VPIDDSSESL EPMCRHIRRG LEQGNLKKAL VNVEWNICQD ENSTTRP00000006348/1-822 MGKKRTKGKT VPIDDSSESL EPMCRHIRKG LEQGNLKKAL VNVEWNICQD BACU005041/1-726 ---------- ---------- ---------- ---------- -MQLWALSP- 51 100 ENSP00000334808/1-823 CKTDNKVKDK AEEETEEKPS VWLCLKCGHQ GCGRNSQEQH ALKHYLTPRS ENSBTAP00000026801/1-826 CKTDNKVKDK SEEETEENPS VWLCLKCGHQ GCGRNSQEQH ALKHYMKPRS bmy_09515T0/1-808 CKTDNKVKDK SEEETEENPS VWLCLKCGHQ GCGRNSQEQH ALKHYMTPRS ENSTTRP00000006348/1-822 CKTDNKVKDK SEEETEENSS VWLCLKCGHQ GCGRNSQEQH ALKHYMTPRS BACU005041/1-726 ---------- ---------- -W-------- GCGRNSQEQH ALKHYMTPRS 101 150 ENSP00000334808/1-823 EPHCLVLSLD NWSVWCYVCD NEVQYCSSNQ LGQVVDYVRK QASITTPKPA ENSBTAP00000026801/1-826 EPHCLVLSLD NWSVWCYLCD DEVHYCNSNR LGQVVDYVRK QAGNTTPESA bmy_09515T0/1-808 EPHCLVLSLD NWSVWCYLCD DEVQYCNSNR LGQVVDYVRK QAGITAPKSA ENSTTRP00000006348/1-822 EPHCLVLSLD NWSVWCYLCD DEVQYCNSNR LGQVVDYVRK QAGITAPKSA BACU005041/1-726 EPHCLVLSLD NWSVWCYLCD DEVQYCNSNR LGQVVDYVRK QASITAPKSA 151 200 ENSP00000334808/1-823 EKDNGNIELE NKKLEKESKN EQEREKKENM AKENPPMNSP CQITVKGLSN ENSBTAP00000026801/1-826 E-DNGNIELE NKKLEKESKN EQEREKKENM ARENPSMNST SQITVKGLSN bmy_09515T0/1-808 AKDSGNIELE NKKLEKESKN EQEREKKENV AKENPSMNST SQIT------ ENSTTRP00000006348/1-822 AKDSGNIELE NKKLEKESKN EQEREKKENV AKENPSMNST SQITVKGLSN BACU005041/1-726 AKHSGNIELE NKKLEKESKN EQEREKKENV AKENPSMNST SQITVKGLSN 201 250 ENSP00000334808/1-823 LGNTCFFNAV MQNLSQTPVL RELLKEVKMS GTIVKIEPPD LALTEPLEIN ENSBTAP00000026801/1-826 LGNTCFFNAV MQNLSQTPVL RELLKEVKMS GTIVKIEPPD LALTEPLEIN bmy_09515T0/1-808 ---------- --NLSQTPVL RELLKEVKMS GTIVKIEPPD LALTEPLEIN ENSTTRP00000006348/1-822 LGNTCFFNAV MQNLSQTPVL RELLKEVKMS GTIVKIEPPD LALTEPLEIN BACU005041/1-726 LGNTCFFNAV MQNLSQTPVL RELLKEVKMS GTIVKIEPPD LALTEPLEIN 251 300 ENSP00000334808/1-823 LEPPGPLTLA MSQFLNEMQE TKKGVVTPKE LFSQVCKKAV RFKGYQQQDS ENSBTAP00000026801/1-826 LEPPGPLTLA MSQFLNEMQE TKKGIVTPRE LFSQVCKKAV RFKGYQQQDS bmy_09515T0/1-808 LEPPGPLTLA MSQFLNEMQE TKKGIVTPRE LFSQVCKKAV RFKGYQQQDS ENSTTRP00000006348/1-822 LEPPGPLTLA MSQFLNEMQE TKKGIVTPRE LFSQVCKKAV RFKGYQQQDS BACU005041/1-726 LEPPGPLTLA MSQFLNEMQE TKKGIVTPRE LFSQVCKKAV RFKGYQQQDS 301 350 ENSP00000334808/1-823 QELLRYLLDG MRAEEHQRVS KGILKAFGNS TEKLDEELKN KVKDYEKKKS ENSBTAP00000026801/1-826 QELLRYLLDG MRAEEHQRVS KGILKAFDNS TEKVDEELKN KVKEYEKKKS bmy_09515T0/1-808 QELLRYLLDG MRAEEHQRVS KGILKAFGNS TEKLDEELKN KVKDYEKKKS ENSTTRP00000006348/1-822 QELLRYLLDG MRAEEHQRVS KGILKAFGNS TEKLDEELKN KVKDYEKKKS BACU005041/1-726 QELLRYLLDG MRAEEHQRVS KGILKAFGNS TEKLDEELKN KVKDYEKKKS 351 400 ENSP00000334808/1-823 MPSFVDRIFG GELTSMIMCD QCRTVSLVHE SFLDLSLPVL DDQSGKKSVN ENSBTAP00000026801/1-826 VPSFVDRIFG GELTSTIMCD ECRTVSLVHE SFLDLSLPVL DDQSGKKSIN bmy_09515T0/1-808 VPSFVDRVFG GELTSTIMCD ECRTVSLVHE SFLDLSLPVL DDQSGKKSIN ENSTTRP00000006348/1-822 VPSFVDRVFG GELTSTIMCD ECRTVSLVHE SFLDLSLPVL DDQSGKKSIN BACU005041/1-726 VPSFVDRVFG GELTSTIMCD ECRTVSLVHE SFLDLSLPVL DDQSGKKSIN 401 450 ENSP00000334808/1-823 DKNLKKTVED EDQDSEEEKD NDSYIKERSD IPSGTSKHLQ KKAKKQAKKQ ENSBTAP00000026801/1-826 DKNLKKTMED EDKDSEEEKD NDSYLKERND IPSGTSKHLQ KKAKKQAKKQ bmy_09515T0/1-808 DKNLKKTMDD EDKESEEEKD NDSYIKERND IPSGTSKHLQ KKAKKQAKKQ ENSTTRP00000006348/1-822 DKNLKKTMDD EDKESEEEKD NDSYIKERND ILSGTSKHLQ KKAKKQAKKQ BACU005041/1-726 DKNLKKTMDD EDKESEEEKD NDSYIKERND IPSGTSKHLQ KKAKKQAKKQ 451 500 ENSP00000334808/1-823 AKNQRRQQKI QGKVLHLNDI CTIDHPEDSE YEAEMSLQGE VNIKSNHISQ ENSBTAP00000026801/1-826 AKNQRRQQKI QGKVLHLNDV YAIDHPEDNE CEVEMSLQRE ADIKSNHISQ bmy_09515T0/1-808 AKNQRRQQKI QGKVLHLNDV CAIDHPEDNE CEVEMSLQRE VDIKSNHISQ ENSTTRP00000006348/1-822 AKNQRRQQKI QGKVLHLNDV YAIDHPEGNE CEVEMSLQRE VDIKSNHISQ BACU005041/1-726 AKNQRRQQKI QGKVLHLNDV CAIDHPEDNE CEVEMSLQRE VDIKSNHISQ 501 550 ENSP00000334808/1-823 EGVMHKEYCV NQKDLNGQAK MIESVTDNQK STEEVDMKNI NMDNDLEVLT ENSBTAP00000026801/1-826 EEVAPKEYCV NQKDLNGHEK MIESITDNQK STEEAAMKNV SVDNDLEVLA bmy_09515T0/1-808 EEVIHKEYCV NQKDLNGHEK MTESITDNQK STEEVDMKNV NMDNDLKVLA ENSTTRP00000006348/1-822 EEVIHKEYCV NQKDLNGHEK MIESVTDNQK STEEVDMKNV NMDNDLKVLA BACU005041/1-726 EEVIHKEYCV NQKDLNGHEK MIESITDNQK STEEVDMKNV NMDNDLKVLA 551 600 ENSP00000334808/1-823 SSP---TRNL NGAYLTEGSN GEVDISNGFK NLNLNAALHP DEINIEILND ENSBTAP00000026801/1-826 SSATECPRNL NGAYLKEGSN GEVDISSGFE NLNLNAALQP DEINIEILDD bmy_09515T0/1-808 SPA-ECTRNL NGAYMKEGSS GEVDISSGFK NLNLNAALQP DEINLEILND ENSTTRP00000006348/1-822 SPA-ECTRNL NGAYMKEGSN GEVDISSGFK NLNLNAALQP DEINLEILND BACU005041/1-726 SRA-ECTRDL NGAYMKEGSS GEVDISSGFK NLNLNAALQP DEINLEILND 601 650 ENSP00000334808/1-823 SHTPGTKVYE VVNEDPETAF CTLANREVFN TDECSIQHCL YQFTRNEKLR ENSBTAP00000026801/1-826 DPTPGTKVYE VVNEDPETAF CTLANREAFN TDECSVQHCL YQFTRNEKLR bmy_09515T0/1-808 AHTPGTKVYE VVNEDPETAF CTLANREAFS TDECSIQHCL YQFTRNEKLR ENSTTRP00000006348/1-822 DHTPGTKVYE VVNEDPETAF CTLANREAFS TDECSIQHCL YQFTRNEKLR BACU005041/1-726 AHTPGTKVYE VVNEDPETAF CTLANREAFS TDECSIQHCL YQFTRNEKLR 651 700 ENSP00000334808/1-823 DANKLLCEVC TRRQCNGPKA NIKGERKHVY TNAKKQMLIS LAPPVLTLHL ENSBTAP00000026801/1-826 DANKLLCEVC TRRQYSGPKA NMKGERKHIY TNAKKQMLIS LAPPVLTLHF bmy_09515T0/1-808 DANKLLCEVC TRRQYSGPKA NIKGEKQHVY TNAKKQMLIS LAPPVLTLHL ENSTTRP00000006348/1-822 DANKLLCEVC TRRQYSGPKA NIKGEKKHVY TNAKKQMLIS LAPPVLTLHL BACU005041/1-726 DANKLLCEVC TRRQYSGPKA NIKGEKQHVY TNAKKQMLIS LAPPVLTLHL 701 750 ENSP00000334808/1-823 KRFQQAGFNL RKVNKHIKFP EILDLAPFCT LKCKNVAEEN TRVLYSLYGV ENSBTAP00000026801/1-826 KRFQQAGFNL RKVNKHIKFP EILDLAPFCT LKCKNVAEEH TRVLYSLYGV bmy_09515T0/1-808 KRFQQAGFNL RKVNRHIKFP EILDLAPFCT LKCKNVAEEN TRVLYSLYGV ENSTTRP00000006348/1-822 KRFQQAGFNL RKVNRHIKFP EILDLAPFCT LKCKNVAEEN KRVLYSY--- BACU005041/1-726 KRFQQ----- ---------- ---------- ----NVAEEN TRVLYSLYGV 751 800 ENSP00000334808/1-823 VEHSGTMRSG HYTAYAKART ANSHLSNLVL HGDIPQDFEM ES-KGQWFHI ENSBTAP00000026801/1-826 VEHSGTMRSG HYTAYAKTRT ASTHLSNLVL HGDIPQDFEM ESTKGQWFHI bmy_09515T0/1-808 VEHSGTMRSG HYTAYAKARS ANSHLSNLVL HGDILQDFEM ESTKGQWFHI ENSTTRP00000006348/1-822 VEHS-TMRSG HYTAYAKARS ANSHLSNLVL HGDILQDFEM DSTKGQWFHI BACU005041/1-726 VEHSGTMRSG HYTAYAKARS ANSHLSNLVL HGDILQDFEM ESTKGQWFHI 801 850 ENSP00000334808/1-823 SDTHVQAVPT TKVLNSQAYL LFYERIL ENSBTAP00000026801/1-826 SDTHVQAVPT TKVLSSQAYL LFYERIL bmy_09515T0/1-808 SDTHVQAVPT TKITLMHFLN LPESYKL ENSTTRP00000006348/1-822 SDTHVQAVPT TKVLNSQAYL LFYERIL BACU005041/1-726 SDTHVQAVPT TKVLNSQAYL LFYERIL