KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:20 2014 Check: 00 .. Name: ENSP00000366748/1-410 Len: 503 Check: 7902 Weight: 1.00 Name: ENSBTAP00000026802/1-410 Len: 503 Check: 6932 Weight: 1.00 Name: ENSTTRP00000012073/1-469 Len: 503 Check: 6148 Weight: 1.00 Name: bmy_12431T0/1-335 Len: 503 Check: 5385 Weight: 1.00 Name: BACU019994/1-472 Len: 503 Check: 8338 Weight: 1.00 // 1 50 ENSP00000366748/1-410 ---------- ---------- ---------- -MELPSGPGP ERLFDSHRLP ENSBTAP00000026802/1-410 ---------- ---------- ---------- -MEPPSSPGP ERLFDSHRLP ENSTTRP00000012073/1-469 ---------- ---------- ---------- -MEPPPSPGP ERLFDSHRLP bmy_12431T0/1-335 ADARRLRLPK SPCGGVRRWR RRRSGTPKAA AMEPPPSPGP ERLFDSHRLP BACU019994/1-472 ---------- ---------- ---------- -MEPPPSPGP ERLFDSHRLP 51 100 ENSP00000366748/1-410 GDCFLLLVLL LYAPVGFCLL VLRLFLGIHV FLVSCALPDS VLRRFVVRTM ENSBTAP00000026802/1-410 GDGFLLLALL LYAPVGFCLL VLRLFLGIHV FLVSCALPDS VFRRFVVRTM ENSTTRP00000012073/1-469 GDGFLLLALL LYAPVGFCLL VLRVFLGIHV FLVSCALPDS VLRRFVVRTM bmy_12431T0/1-335 GDGFLLLALL LYAPVGFCLL VLRVFLGIHV FLVSCALPDS VLRRFVVRTM BACU019994/1-472 GDGFLLLALL LYAPVGFCLL VLRVFLGIHV FLVSCALPDS VLRRFVVRTM 101 150 ENSP00000366748/1-410 CAVLGLVARQ EDSGLRDHSV RVLISNHVTP FDHNIVNLLT TCST------ ENSBTAP00000026802/1-410 CAVLGLVARQ EDSGLRDHRV RVLISNHVTP FDHNIVNLLT SCST------ ENSTTRP00000012073/1-469 CAVLGLVARQ EDSGLRDHRV RVLISNHVTP FDHNIVNLLT SCSTVSGEAE bmy_12431T0/1-335 CAVLGLVARQ EDSGLRDHRV RVLISNHVTP FDHNIVNLLT SCST------ BACU019994/1-472 CAVLGLVARQ EDSGLRDHRV RVLISNHVTP FDHNIVNLLT SCSTVSDEAE 151 200 ENSP00000366748/1-410 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026802/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012073/1-469 SATGRFPGAQ LKAPLSVSGF PLGDTDLPLT --PFFYICQF FIPNIFFLSF bmy_12431T0/1-335 ---------- ---------- ---------- ---------- ---------- BACU019994/1-472 SAMGRFPGAQ LKAPLSVSGF PLGTTLTLTS DPAFLPICQF FSFPNILLAF 201 250 ENSP00000366748/1-410 ------PLLN SPPSFVCWSR GFMEMNGRGE LVESLKRFCA STRLPPTPLL ENSBTAP00000026802/1-410 ------PLLN SPPSFVCWSR GFMEMDGQGE LVESLKRFCA STRLPPTPLL ENSTTRP00000012073/1-469 SPSHSQPLLN SPPSFVCWSR GFMEMDGRGE LVESLKRFCA STRLPPTPLL bmy_12431T0/1-335 ------PLLN SPPSFVCWSR GFMEMDGRGE LVESLKRFCA STRLPPTPLL BACU019994/1-472 SPSHSQPLLN SPPSFVCWSR GFMEMDGRGE LVESLKRFCA STRLPPTPLL 251 300 ENSP00000366748/1-410 LFPEEEATNG REGLLRFSSW PFSIQDVVQP LTLQVQRPLV SVTVSDASWV ENSBTAP00000026802/1-410 LFPEEEATNG REGLLRFSSW PFSIQDVVQP LTLRVQRPLV SVTVSDASWV ENSTTRP00000012073/1-469 LFPEEEATNG REGLLRFSSW PFSIQDVVQP LTLRVQRPLV SVTVSDASWV bmy_12431T0/1-335 LFPEEEATNG REGLLRFSSW PFSIQDVVQP LTLRVQRPLV SVTVSDASWV BACU019994/1-472 LFPEEEATNG REGLLRFSSW PFSIQDVVQP LTLRVQRPLV SVTVSDASWV 301 350 ENSP00000366748/1-410 SELLWSLFVP FTVYQVRWLR PVHRQLGEAN EEFALRVQQL VAKELGQTGT ENSBTAP00000026802/1-410 SELLWSLFVP FTVYQVRWLR PVHRQLGEGS EEFALRVQQL VAKELGQTGT ENSTTRP00000012073/1-469 SELLWSLFVP FTVYQVRWLR PVHRQLGEGS EEFSLRVQQL VAKELGQTGT bmy_12431T0/1-335 SELLWSLFVP FTVY------ ---------- --------QL VAKELGQTGT BACU019994/1-472 SELLWSLFVP FTVYQVRWLR PVHRQLGEGS EEFSLRVQQL VAKELGQTGT 351 400 ENSP00000366748/1-410 RLTPADKAEH MKRQRHPRLR PQSAQSSFPP SPGPSPDVQL ATLAQRVKEV ENSBTAP00000026802/1-410 RLTPADKAEH MKRQRHPRLR PQSAQSSFPH SPGPSPDVHL ATLAQRVKEV ENSTTRP00000012073/1-469 QLTPADKAEH MKRQRHPRLR PQSAQ-SFPP SPGPSPDVQL ATLAQRVKEV bmy_12431T0/1-335 QLTPADKAEH MKRQRHPRLR PQSAQSSFPP SPGPSPDVQL ATLAQRVKEV BACU019994/1-472 QLTPADKAEH MKRQRHPRLR PQSAQSSFPP SPGPSPDVQL ATLAQRVKEV 401 450 ENSP00000366748/1-410 LPHVPLGVIQ RDLAKTGCVD LTITNLLEGA VAFMPEDITK GTQSLPTASA ENSBTAP00000026802/1-410 LPHVPLGVIQ RDLARTGCVD LTITNLLEGA VAFMPEDITE GTQSLATAST ENSTTRP00000012073/1-469 LPHVPLGVIQ RDLARTGCVD LTITNLLEGA VTFMPEDISE RTQALPTAST bmy_12431T0/1-335 LPHVPLGVIQ RDLG------ -----MRKGR LT-------- ---------- BACU019994/1-472 LPHVPLGVIQ RDLARTGCVD LTITNLLEGA VTFMPEDITE RTQALPTAST 451 500 ENSP00000366748/1-410 SKFPSSGPVT PQPTALTFAK SSWARQESLQ ERKQALYEYA RRRFTERRAQ ENSBTAP00000026802/1-410 PKFPSSGPAT PQPTALTFAK SSWARQESLQ ERKQALYEYA RRRFTERQAQ ENSTTRP00000012073/1-469 PKFPSSGPAT PQPTALTFAK SSWARQENLQ ERKQALYEYA RRRFTERQAQ bmy_12431T0/1-335 ---------- ---------- ---------- ---------- ---------- BACU019994/1-472 PKFPSSGPAT PQPTALTFAK SSWARQESLQ ERKQALYEYA RRRFTERQAQ 501 550 ENSP00000366748/1-410 EAD ENSBTAP00000026802/1-410 EAD ENSTTRP00000012073/1-469 EAD bmy_12431T0/1-335 --- BACU019994/1-472 EAD