KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:25 2014 Check: 00 .. Name: ENSTTRP00000000650/1-953 Len: 1123 Check: 3630 Weight: 1.00 Name: ENSBTAP00000026819/1-869 Len: 1123 Check: 2849 Weight: 1.00 Name: bmy_09510T0/1-725 Len: 1123 Check: 8403 Weight: 1.00 Name: ENSP00000382791/1-918 Len: 1123 Check: 1748 Weight: 1.00 Name: BACU005045/1-905 Len: 1123 Check: 1395 Weight: 1.00 // 1 50 ENSTTRP00000000650/1-953 MERRTLLAQP GLWTRDTSWA LLYFLCYVLP QTXXXXXXXX XXXXGIFETV ENSBTAP00000026819/1-869 ---------- ---------- ---------- ---------- ---GGIFETV bmy_09510T0/1-725 ---------- ---------- ---------- ---------- -----MFEKI ENSP00000382791/1-918 MEHGTLLAQP GLWTRDTSWA LLYFLCYILP QT----APQV LRIGGIFETV BACU005045/1-905 MERRTLLAQP GLWTRDTSWA LLYFLCYVLP QT----APQV LRIGGIFETV 51 100 ENSTTRP00000000650/1-953 ENEPVNVEEL AFKFAVTSIN RNRTLMPNTT LTYDIQRINL FDSFEASRRX ENSBTAP00000026819/1-869 ENEPVNVEEL AFKFAVTSIN RNRTLMPNTT LTYDIQKINL FDSFEASRRA bmy_09510T0/1-725 ES-------- ---------- ---------- ---------- ---------- ENSP00000382791/1-918 ENEPVNVEEL AFKFAVTSIN RNRTLMPNTT LTYDIQRINL FDSFEASRRA BACU005045/1-905 ENEPVNVEEL AFKFAVTSIN RNRTLMPNTT LTYDIQRINL FDSFEASRRA 101 150 ENSTTRP00000000650/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026819/1-869 CDQLALGVAA LFGPSHSSSV SAVQSICNAL EVPHIQTRWK HPSVDNRDLF bmy_09510T0/1-725 ---------- ---------- ---------- ---------- ---------- ENSP00000382791/1-918 CDQLALGVAA LFGPSHSSSV SAVQSICNAL EVPHIQTRWK HPSVDNKDLF BACU005045/1-905 CDQLALGVAA LFGPSHSSSV SAVQSICNAL EIPHIQTRWK HPSVDNKDLF 151 200 ENSTTRP00000000650/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLIRL QELIKAPSRY ENSBTAP00000026819/1-869 YINLYPDYAA ISRAVLDLVL YYNWKTVTVV YEDSTGLIRL QELIKAPSRY bmy_09510T0/1-725 ---------- ---------- ---------- ---------- ---------- ENSP00000382791/1-918 YINLYPDYAA ISRAILDLVL YYNWKTVTVV YEDSTGLIRL QELIKAPSRY BACU005045/1-905 YVNLYPDYAA ISRAVLDLVL YYNWKTVTVV YEDSTGLIRL QELIKAPSRY 201 250 ENSTTRP00000000650/1-953 NIKIKIRQLP SGNKDAKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXILFM ENSBTAP00000026819/1-869 NIKIKIRQLP SGNKDAKPLL KEMKKGKEFY VIFDCSHETA AEILKQILFM bmy_09510T0/1-725 ---------- ---------- ---------- ---------- ---------- ENSP00000382791/1-918 NIKIKIRQLP SGNKDAKPLL KEMKKGKEFY VIFDCSHETA AEILKQILFM BACU005045/1-905 NIKIKIRQLP SGNKDAKPLL KEMKKGKEFY VIFDCSHETA AEILKQILFM 251 300 ENSTTRP00000000650/1-953 GMMTEYYHYF FTTLDLFALD LELYRYSGVN MTGFRLLNVD NPHVSSIIEK ENSBTAP00000026819/1-869 GMMTEYYHYF FTTLDLFALD LELYRYSGVN MTGFRLLNID NPHVSAIIEK bmy_09510T0/1-725 ---------- ---------- ---------- ---------- ---------- ENSP00000382791/1-918 GMMTEYYHYF FTTLDLFALD LELYRYSGVN MTGFRLLNID NPHVSSIIEK BACU005045/1-905 GMMTEYYHYF FTTLDLFALD LELYRYSGVN MTGFRLLNID NPHVSSIIEK 301 350 ENSTTRP00000000650/1-953 WSMERLQAPP RPGTGLLDGM MTTEAALMYD AVYIVAIASH RASQLTVSSL ENSBTAP00000026819/1-869 WSMERLQAPP RPETGLLDGM MTTEAALMYD AVYMVAIASH RASQLTVSSL bmy_09510T0/1-725 ---------- ---------- ---------- ---------- ---------- ENSP00000382791/1-918 WSMERLQAPP RPETGLLDGM MTTEAALMYD AVYMVAIASH RASQLTVSSL BACU005045/1-905 WSMERLQAPP RPETGLLDGM MTTEAALMYD AVYVVAIASH RASQLTVSSL 351 400 ENSTTRP00000000650/1-953 QCHRHKPWRL GPRFMNLIKE AQ-WDGLTGR ITFNKTDGLR KDFDLDIISL ENSBTAP00000026819/1-869 QCHRHKPWRL GPRFMNLIKE ARWWDGLTGR ITFNKTDGLR KDFDLDIISL bmy_09510T0/1-725 ---------- ---------- AQ-WDGLTGR ITFNKTDGLR KDFDLDIISL ENSP00000382791/1-918 QCHRHKPWRL GPRFMNLIKE AR-WDGLTGH ITFNKTNGLR KDFDLDIISL BACU005045/1-905 QCHRHKPWRL GPRFMNLIKE AQ-WDGLTGR ITFNKTDGLR KDFDLDIISL 401 450 ENSTTRP00000000650/1-953 KEEGTEKVAG EVSKHLYKVW KKIGIWN--- ---------- ---------- ENSBTAP00000026819/1-869 KEEGTE---- ---------- -KIGIWN--- ---------- ---------- bmy_09510T0/1-725 KEEGTEKIQS VLGLKADARL FHSAILDFEF ILKTEVLLPG SPSPRSENRT ENSP00000382791/1-918 KEEGTEKAAG EVSKHLYKVW KKIGIWN--- ---------- ---------- BACU005045/1-905 KEEGTE---- ---------- -KIGIWN--- ---------- ---------- 451 500 ENSTTRP00000000650/1-953 ------SNSG LNMTDGNKDR SNNITDSLAN RTLIVTTILE EPYVMYRKSD ENSBTAP00000026819/1-869 ------SNSG LNMTDGNKDR SNNITDSLAN RTLIVTTILE EPYVMYRKSD bmy_09510T0/1-725 EMLNTLASGG LNMTDGNKDR SNNITDSLAN RTLIVTTILE EPYVMYRKSD ENSP00000382791/1-918 ------SNSG LNMTDSNKDK SSNITDSLAN RTLIVTTILE EPYVMYRKSD BACU005045/1-905 ------SNSG LNMTDGNKDR SNNITDSLAN RTLIVTTILE EPYVMYRKSD 501 550 ENSTTRP00000000650/1-953 KPLYGNDRFE GYCLDLLKEL SNILGFIYDV KLVPDGKYGA QNDKGEWNGM ENSBTAP00000026819/1-869 KPLYGNDRFE GYCLDLLKEL SNILGFIYDV KLVADGKYGA QNDKGEWNGM bmy_09510T0/1-725 KPLYGNDRFE GYCLDLLKEL SNILGFIYDV KLVPDGKYGA QDDKGEWNGM ENSP00000382791/1-918 KPLYGNDRFE GYCLDLLKEL SNILGFIYDV KLVPDGKYGA QNDKGEWNGM BACU005045/1-905 KPLYGNDRFE GYCLDLLKEL SNILGFIYDV KLVPDGKYGA QNDKGEWNGM 551 600 ENSTTRP00000000650/1-953 VKELIDHRAD LAVAPLTITY VREKVIDFSK PFMTLGISIL YHKPNGTNPG ENSBTAP00000026819/1-869 VKELIDHKAD LAVAPLTITY VREKVIDFSK PFMTLGISIL YRKPNGTNPG bmy_09510T0/1-725 VKELIDHRAD LAVAPLTITY VREKVIDFSK PFMTLGISIL YRKPNGTNPG ENSP00000382791/1-918 VKELIDHRAD LAVAPLTITY VREKVIDFSK PFMTLGISIL YRKPNGTNPG BACU005045/1-905 VKELIDHRAD LAVAPLTITY VREKVIDFSK PFMTLGISIL YRKPNGTNPG 601 650 ENSTTRP00000000650/1-953 VFSFLNPLSP DIWMYVLLAC LGVSCVLFVI ARFTPYEWYN PHPCNPDSDV ENSBTAP00000026819/1-869 VFSFLNPLSP DIWMYVLLAC LGVSCVLFVI ARFTPYEWYN PHPCNPDSDV bmy_09510T0/1-725 VFSFLNPLSP DIWMYVLLAC LGVSCVLFVI ARFTPYEWYN PHPCNPDSDV ENSP00000382791/1-918 VFSFLNPLSP DIWMYVLLAC LGVSCVLFVI ARFTPYEWYN PHPCNPDSDV BACU005045/1-905 VFSFLNPLSP DIWMYVLLAC LGVSCVLFVI ARFTPYEWYN PHPCNPDSDV 651 700 ENSTTRP00000000650/1-953 VENNFTLLNS FWFGVGALMQ Q--------- ---------- -GSELMPKAL ENSBTAP00000026819/1-869 VENNFTLLNS FWFGVGALMQ Q--------- ---------- -GSELMPKAL bmy_09510T0/1-725 VENNFTLLNS FWFGVGALMQ QAINYKTSKH PIRIVKDSFK PGSELMPKAL ENSP00000382791/1-918 VENNFTLLNS FWFGVGALMQ Q--------- ---------- -GSELMPKAL BACU005045/1-905 VENNFTLLNS FWFGVGALMQ Q--------- ---------- -GSELMPKAL 701 750 ENSTTRP00000000650/1-953 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE ENSBTAP00000026819/1-869 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE bmy_09510T0/1-725 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE ENSP00000382791/1-918 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE BACU005045/1-905 STRIVGGIWW FFTLIIISSY TANLAAFLTV ERMESPIDSA DDLAKQTKIE 751 800 ENSTTRP00000000650/1-953 YGAVRDGSTM TFF------- ---------- ---------- ---------- ENSBTAP00000026819/1-869 YGAVRDGSTM TFF------- ---------- ---------- ---------- bmy_09510T0/1-725 YGAVRDGSTM TFFKKYDIDL MKYCKETRYP QLVIHHNTCQ KPGKLPARHI ENSP00000382791/1-918 YGAVRDGSTM TFF------- ---------- ---------- ---------- BACU005045/1-905 YGAVRDGSTM TFF------- ---------- ---------- ---------- 801 850 ENSTTRP00000000650/1-953 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026819/1-869 ---------- ---------- ---------- ---------- ---------- bmy_09510T0/1-725 GQRDTAKVEL TSLLSVIPGG VPSATGQKSP VRVPVPKISK IFRGQVRQRP ENSP00000382791/1-918 ---------- ---------- ---------- ---------- ---------- BACU005045/1-905 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000000650/1-953 ---------- ---------- ---------- KKSKISTYEK MWAFMSSRQQ ENSBTAP00000026819/1-869 ---------- ---------- ---------- KKSKISTYEK MWAFMSSRQQ bmy_09510T0/1-725 QSLEALLSTY RNLQKNHFQM VDKQQTLCKV KKSKISTYEK MWAFMSSRQQ ENSP00000382791/1-918 ---------- ---------- ---------- KKSKISTYEK MWAFMSSRQQ BACU005045/1-905 ---------- ---------- ---------- KKSKISTYEK MWAFMSSRQQ 901 950 ENSTTRP00000000650/1-953 TALVKNSDEG IQRVLTTDYA LLMESTNIEY VTQRNCNLTQ IGGLIDSKGY ENSBTAP00000026819/1-869 TALVKNSDEG IHRVLTTDYA LLMESTSIEY VTQRNCNLTQ IGGLIDSKGY bmy_09510T0/1-725 TALVKNSDEG IQRVLTTDYA LLMESTNIEY VMQRNCNLTQ IGGLIDSKGY ENSP00000382791/1-918 TALVRNSDEG IQRVLTTDYA LLMESTSIEY VTQRNCNLTQ IGGLIDSKGY BACU005045/1-905 TALVKNSDEG IQRVLTTDYA LLMESTNIEY VMQRNCNLTQ IGGLIDSKGY 951 1000 ENSTTRP00000000650/1-953 GVGTPIGSPY RDKITIAILQ LQEEGKLHMM KEKWWRGNGC PEEDNKEASA ENSBTAP00000026819/1-869 GVGTPIADPF MRKLTLAMIN LQQEKSLHFN QEYWIRGHGR PKDSLQLAPW bmy_09510T0/1-725 GVGTPIGSPY RDKITIAILQ LQEEGKLHMM KEKWWRGNGC PEEDNKEASA ENSP00000382791/1-918 GVGTPIGSPY RDKITIAILQ LQEEGKLHMM KEKWWRGNGC PEEDNKEASA BACU005045/1-905 GVGTPIGSPY RDKITIAILQ LQEEGKLHMM KEKWWRGNGC PEEDNKEASA 1001 1050 ENSTTRP00000000650/1-953 LGVENIGGIF IVLAAGLVLS VFVAIGEFIY KSRKNNDIEQ KGKSSRIRFY ENSBTAP00000026819/1-869 LGSFNIASLF LIISQSLPNS VFICYMYFQF HGRKKQS--- ---------- bmy_09510T0/1-725 LGVENIGGIF IVLAAGLVLS VFVAIGEFIY KSRKNND--- ---------- ENSP00000382791/1-918 LGVENIGGIF IVLAAGLVLS VFVAIGEFIY KSRKNND--- ---------- BACU005045/1-905 LGVENIGGIF IVLAAGLVLS VFVAIGEFIY KSRKNND--- ---------- 1051 1100 ENSTTRP00000000650/1-953 FRNKVRFHGR KKQSLGVEKC LSFNAIMEEL GISLKNQKKL KKKSRTKGKS ENSBTAP00000026819/1-869 ---------- ----LGVEKC LSFNAIMEEL GISLKNQKKL KKKSRTKGKS bmy_09510T0/1-725 ---------- ------IEQA FCFF-----Y GLQCKQTHPT NSTSGTTLST ENSP00000382791/1-918 ---------- ------IEQA FCFF-----Y GLQCKQTHPT NSTSGTTLST BACU005045/1-905 ---------- ------IEQC LSFNAIMEEL GISLKNQKKL KKKSRTKGKS 1101 1150 ENSTTRP00000000650/1-953 SFTSILTCHQ RRTQRKESVA --- ENSBTAP00000026819/1-869 SFTSILTCHQ RRTQRKETMA --- bmy_09510T0/1-725 DLECGKLIRE ERGIRTQSSI HTV ENSP00000382791/1-918 DLECGKLIRE ERGIRKQSSV HTV BACU005045/1-905 SFTSILTCHQ RRTQRKESVA ---