KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:26 2014 Check: 00 .. Name: ENSTTRP00000006840/1-926 Len: 1014 Check: 7251 Weight: 1.00 Name: ENSBTAP00000026825/1-908 Len: 1014 Check: 831 Weight: 1.00 Name: ENSP00000367408/1-921 Len: 1014 Check: 7264 Weight: 1.00 Name: bmy_05066T0/1-886 Len: 1014 Check: 5761 Weight: 1.00 Name: BACU011789/1-701 Len: 1014 Check: 8954 Weight: 1.00 // 1 50 ENSTTRP00000006840/1-926 MADDDVLFED VYELCEVIGK ---------- ---------- ---------- ENSBTAP00000026825/1-908 MADDDVLFED VYELCEVIGK ---------- ---------- ---------- ENSP00000367408/1-921 MADDDVLFED VYELCEVIGK ---------- ---------- ---------- bmy_05066T0/1-886 MADDDVLFED VYELCEVIGN VEKSSKDYVK RGNFVSAFVF AFGYMKAIVV BACU011789/1-701 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006840/1-926 ---------- ---------- ---------- --GPFSVVRR CINRETGQQF ENSBTAP00000026825/1-908 ---------- ---------- ---------- --GPFSVVRR CINRETGQQF ENSP00000367408/1-921 ---------- ---------- ---------- --GPFSVVRR CINRETGQQF bmy_05066T0/1-886 HCTIHYKCDE ASRPVIWTGS SPHLLKVSSY TMGPFSVVRR CINRETGQQF BACU011789/1-701 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006840/1-926 AVKIVDVAKF TSSPGLSTED LKREASICHM LKHPHIVELL ETYSSDGMLY ENSBTAP00000026825/1-908 AVKIVDVAKF TSSPGLSTED LKREASICHM LKHPHIVELL ETYSSDGMLY ENSP00000367408/1-921 AVKIVDVAKF TSSPGLSTED LKREASICHM LKHPHIVELL ETYSSDGMLY bmy_05066T0/1-886 AVKIVDVAKF TSSPGLSTED LKREASICHM LKHPHIVELL ETYSSDGMLY BACU011789/1-701 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006840/1-926 MVFEFMDGAD LCFEIVKRAD AGFVYSEAVA SHYMRQILEA LRYCHDNNII ENSBTAP00000026825/1-908 MVFEFMDGAD LCFEIVKRAD AGFVYSEAVA SHYMRQILEA LRYCHDNNII ENSP00000367408/1-921 MVFEFMDGAD LCFEIVKRAD AGFVYSEAVA SHYMRQILEA LRYCHDNNII bmy_05066T0/1-886 MVFEFMDGAD LCFEIVKRAD AGFVYSEAVA SHYMRQILEA LRYCHDNNII BACU011789/1-701 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006840/1-926 HRDVKPHCVL LASKENSAPV KLGGFGVAIQ LGESGLVAGG RVGTPHFMAP ENSBTAP00000026825/1-908 HRDVKPHCVL LASKENSAPV KLGGFGVAIQ LGESGLVAGG RVGTPHFMAP ENSP00000367408/1-921 HRDVKPHCVL LASKENSAPV KLGGFGVAIQ LGESGLVAGG RVGTPHFMAP bmy_05066T0/1-886 HRDVKPHCVL LASKENSAPV KLGGFGVAIQ LGESGLVAGG RVGTPHFMAP BACU011789/1-701 -----PHCVL LASKENSAPV KLGGFGVAIQ LGESGLVAGG RVGTPHFMAP 251 300 ENSTTRP00000006840/1-926 EVVKREPYGK PVDVWGCGVI LFILLSGCLP FYGTKERLFE GIIKGKYKMN ENSBTAP00000026825/1-908 EVVKREPYGK PVDVWGCGVI LFILLSGCLP FYGTKERLFE GIIKGKYKMN ENSP00000367408/1-921 EVVKREPYGK PVDVWGCGVI LFILLSGCLP FYGTKERLFE GIIKGKYKMN bmy_05066T0/1-886 EVVKREPYGK PVDVWGCGVI LFILLSGCLP FYGTKERLFE GIIKGKYKMN BACU011789/1-701 EVVKREPYGK PVDVWGCGVI LFILLSGCLP FYGTKERLFE GIIKGKY--- 301 350 ENSTTRP00000006840/1-926 PRQWSHISES AKDLVRRMLM LDPAERITVY EALNHPWLKE RDRYAYKIHL ENSBTAP00000026825/1-908 PRQWSHISES AKDLVRRMLM LDPAERITVY EALNHPWLKE RDRYAYKIHL ENSP00000367408/1-921 PRQWSHISES AKDLVRRMLM LDPAERITVY EALNHPWLKE RDRYAYKIHL bmy_05066T0/1-886 PRQWSHISES AKDLVRRMLM LDPAERITVY EALNHPWLKE RDRYAYKIHL BACU011789/1-701 ---------- ---------- ---------- --------KE RDRYAYKIHL 351 400 ENSTTRP00000006840/1-926 PETVEQLRKF NARRKLKGAV LAAVSSHKFN SFYGDPPEEL PDFSEDPTSS ENSBTAP00000026825/1-908 PETVEQLRKF NARRKLKGAV LAAVSSHKFN SFYGDPPEEL PDFSEDPTSS ENSP00000367408/1-921 PETVEQLRKF NARRKLKGAV LAAVSSHKFN SFYGDPPEEL PDFSEDPTSS bmy_05066T0/1-886 PETVEQLRKF NARRKLKNKV KVL------- ---------- -------RRA BACU011789/1-701 PETVEQLRKF NARRKLKGAV LAAVSSHKFN SFYGDPPEEL PDFSEDPTSS 401 450 ENSTTRP00000006840/1-926 XXXXXXXAVS QVLDSLEEIH ALTDCSEKDL DFLHSVFQDQ HLHTLLDLYD ENSBTAP00000026825/1-908 G------AVS QVLDSLEEIH ALTDCSEKDL DFLHSVFQDQ HLHTLLDLYD ENSP00000367408/1-921 GLLAAERAVS QVLDSLEEIH ALTDCSEKDL DFLHSVFQDQ HLHTLLDLYD bmy_05066T0/1-886 G------AVS QVLDSLEEIH ALTDCSEKDL DFLHSVFQDQ HLHTLLDLYD BACU011789/1-701 G------AVS QVLDSLEEIH ALTDCSEKDL DFLHSVFQDQ HLHTLLDLYD 451 500 ENSTTRP00000006840/1-926 KINTKSS--- ---------- ---------- ---PQIRNPP SDAVQRAKEV ENSBTAP00000026825/1-908 KINTKSS--- ---------- ---------- ---PQIRNPP SDAVQRAKEV ENSP00000367408/1-921 KINTKSS--- ---------- ---------- ---PQIRNPP SDAVQRAKEV bmy_05066T0/1-886 KINTKSS--- ---------- ---------- ---PQIRNPP SDAVQRAKEV BACU011789/1-701 KINTKSSPQI RNPPSDAVQR AKELYDKINT KSSPQIRNPP SDAVQRAKEV 501 550 ENSTTRP00000006840/1-926 LEEISCYPEN NDAKELKRIL TQPHFMALLQ THDVVAHEVY SDEALRVTPP ENSBTAP00000026825/1-908 LEEISCYPEN NDAKELKRIL TQPHFMALLQ THDVVAHEVY SDEALRVTPP ENSP00000367408/1-921 LEEISCYPEN NDAKELKRIL TQPHFMALLQ THDVVAHEVY SDEALRVTPP bmy_05066T0/1-886 LEEISCYPEN NDAKELKRIL TQPHFMALLQ THDVVAHEVY SDEALRVTPP BACU011789/1-701 LEEISCYPEN NDAKELKRIL TQPHFMALLQ THDVVAHEVY SDEALRVTPP 551 600 ENSTTRP00000006840/1-926 PTSPYLNGDS PESANGDMDM ENVTRVRLVQ FQKNTDEPMG ITLKMNELNH ENSBTAP00000026825/1-908 PTSPYLNGDS PESANGDMDM ENVTRVRLVQ FQKNTDEPMG ITLKMNELNH ENSP00000367408/1-921 PTSPYLNGDS PESANGDMDM ENVTRVRLVQ FQKNTDEPMG ITLKMNELNH bmy_05066T0/1-886 PTSPYLNGDS PESANGDMDM ENVTRVRLVQ FQKNTDEPMG ITLKMNELNH BACU011789/1-701 PTSPYLNGDS PESANGDMDM ENVTRVRLVQ FQKNTDEPMG ITLKMNELNH 601 650 ENSTTRP00000006840/1-926 CIVARIMHGG MIHRQGTLHV GDEIREINGI SVANQTVEQL QKMLREMRGS ENSBTAP00000026825/1-908 CIVARIMHGG MIHRQGTLHV GDEIREINGI SVANQTVEQL QKMLREMRGS ENSP00000367408/1-921 CIVARIMHGG MIHRQGTLHV GDEIREINGI SVANQTVEQL QKMLREMRGS bmy_05066T0/1-886 CIVARIMHGG MIHRQGTLHV GDEIREINGI SVANQTVEQL QKMLREMRGS BACU011789/1-701 CIVARIMHGG MIHRQGTLHV GDEIREINGI SVANQTVEQL QKMLREMRGS 651 700 ENSTTRP00000006840/1-926 ITFKIVPSYR TQSSSCERDS PSTSRQSPAN GHSSTNNSVS DLPSTTQPKG ENSBTAP00000026825/1-908 ITFKIVPSYR TQSSSCERDS PSTSRQSPAN GHSSTNNSVS ---------- ENSP00000367408/1-921 ITFKIVPSYR TQSSSCERDS PSTSRQSPAN GHSSTNNSVS DLPSTTQPKG bmy_05066T0/1-886 ITFKIVPSYR TQSSSCERDS PSTSRQSPAN GHSSTNNSVS DLPSTTQPKG BACU011789/1-701 ITFKIVPSYR TQSSSCERDS PSTSRQSPAN GHSSTNNSVS ---------- 701 750 ENSTTRP00000006840/1-926 RQIYVRAQFE YDPAKDDLIP CKEAGIRFRV GDIIQIISKD DHNWWQGKLE ENSBTAP00000026825/1-908 --IYVRAQFE YDPAKDDLIP CKEAGIRFRV GDIIQIISKD DHNWWQGKLE ENSP00000367408/1-921 RQIYVRAQFE YDPAKDDLIP CKEAGIRFRV GDIIQIISKD DHNWWQGKLE bmy_05066T0/1-886 RQIYVRAQFE YDPAKDDLIP CKEAGIRFRV GDIIQIISKD DHNWWQGKLE BACU011789/1-701 --IYVRAQFE YDPAQDDLIP CKEAGIRFRV GDIIQIISKD DHNWWQGKLE 751 800 ENSTTRP00000006840/1-926 NSKNGTAGLI PSPELQEWRV ACIAMEKTKQ EQQASCTWFG KKKKQYKDKY ENSBTAP00000026825/1-908 NSKNGTAGLI PSPELQEWRV ACIAMEKTKQ EQQASCTWFG KKKKQYKDKY ENSP00000367408/1-921 NSKNGTAGLI PSPELQEWRV ACIAMEKTKQ EQQASCTWFG KKKKQYKDKY bmy_05066T0/1-886 NSKNGTAGLI PSPELQEWRV ACIAMEKTKQ EQQASCTWFG KKKKQYKDKY BACU011789/1-701 NSKNGTAGLI PSPELQEWRV ACIAMEKTKQ EQQASCTWFG KKKKQYKDKY 801 850 ENSTTRP00000006840/1-926 LAKHNAVFDQ LDLVTYEEVV KLTAFKRKTL VLLGAHGVGR RHIKNTLITK ENSBTAP00000026825/1-908 LAKHNAVFDQ LDLVTYEEVV KLPAFKRKTL VLLGAHGVGR RHIKNTLITK ENSP00000367408/1-921 LAKHNA---- -DLVTYEEVV KLPAFKRKTL VLLGAHGVGR RHIKNTLITK bmy_05066T0/1-886 LAKHNAVFDQ LDLVTYEEVV KLTAFKRKTL VLLGAHGVGR RHIKNTLITK BACU011789/1-701 LAKHNAVFDQ LDLVTYEEVV KLTAFKRKTL VLLGAHGVGR RHIKNTLITK 851 900 ENSTTRP00000006840/1-926 HPDRFAYPIP HTTRPPKKDE ENGKNYYFVS HDQMMQDISN NEYLEYGSHE ENSBTAP00000026825/1-908 HPDRFAYPIP HTTRPPKKDE ENGKNYYFVS HDQMMQDISN NEYLEYGSHE ENSP00000367408/1-921 HPDRFAYPIP HTTRPPKKDE ENGKNYYFVS HDQMMQDISN NEYLEYGSHE bmy_05066T0/1-886 HPDRFAYPIP HTTRPPKKDE ENGKNYYFVS HDQMMQDISN NEYLEYGSHE BACU011789/1-701 HPDRFAYPIP HTTRPPKKDE ENGKNYYFVS HDQMMQDISN NEYLEYGSHE 901 950 ENSTTRP00000006840/1-926 DAMYGTKLET IRKIHEQGLI AILDVEPQAL KVLRTAEFAP FVVFIAAPTI ENSBTAP00000026825/1-908 DAMYGTKLET IRKIHEQGLI AILDVEPQAL KVLRTAEFAP FVVFIAAPTI ENSP00000367408/1-921 DAMYGTKLET IRKIHEQGLI AILDVEPQAL KVLRTAEFAP FVVFIAAPTI bmy_05066T0/1-886 DAMYGTKLET IRKIHEQGLI AILDVEPQ-- ---------- ---------- BACU011789/1-701 DAMYGTKLET IRKIHEQGLI AILDVEPQ-- ---------- -------PTL 951 1000 ENSTTRP00000006840/1-926 TPGLNEDESL QRLQKESDIL QRTYAHYFDL TIINNEIDET IRHLEEAVEL ENSBTAP00000026825/1-908 TPGLNEDESL QRLQKESDIL QRTYAHYFDL TIINNEIDET IRHLEEAVEH ENSP00000367408/1-921 TPGLNEDESL QRLQKESDIL QRTYAHYFDL TIINNEIDET IRHLEEAVEL bmy_05066T0/1-886 ---------- -----NRDLL ---------- ---------- -----GEIGV BACU011789/1-701 SPGWTRPAPC LQDARGHDRL ---------- ---------- -----AVRQI 1001 1050 ENSTTRP00000006840/1-926 VCTAPQWVPV SWVY ENSBTAP00000026825/1-908 VCTAPQWVPV SWVY ENSP00000367408/1-921 VCTAPQWVPV SWVY bmy_05066T0/1-886 LFSA------ ---- BACU011789/1-701 LVASGSLSP- ----