KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:37 2014 Check: 00 .. Name: ENSP00000353458/1-1556 Len: 1557 Check: 7369 Weight: 1.00 Name: ENSTTRP00000000874/1-1549 Len: 1557 Check: 351 Weight: 1.00 Name: ENSBTAP00000026857/1-1427 Len: 1557 Check: 6557 Weight: 1.00 Name: bmy_14679T0/1-1054 Len: 1557 Check: 1691 Weight: 1.00 Name: BACU008713/1-1557 Len: 1557 Check: 6763 Weight: 1.00 // 1 50 ENSP00000353458/1-1556 MPLLHRKPFV RQKPPADLRP DEEVFYCKVT NEIFRHYDDF FERTILCNSL ENSTTRP00000000874/1-1549 MPLLXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDF FERTILCNSL ENSBTAP00000026857/1-1427 ---------- ---------- ---------- ---------- ---------- bmy_14679T0/1-1054 MPLLHRKPFV RQKPPADLRP DEEVFYCKVT NEIFRHYDDF FERTILCNSL BACU008713/1-1557 MPLLHRKPFV RQKPPADLRP DEEVFYCKVT NEIFRHYDDF FERTILCNSL 51 100 ENSP00000353458/1-1556 VWSCAVTGRP GLTYQEALES EKKARQNLQS FPEPLIIPVL YLTSLTHRSR ENSTTRP00000000874/1-1549 VWSCAVTGRP GLTYQEALES EKKARQNLQS FPEPLIIPVL YLTNLTHRSR ENSBTAP00000026857/1-1427 ---------- ---------- ---------- ---------- ---------- bmy_14679T0/1-1054 VWSCAVTGRP GLTYQEALES EKKARQNLQS FPEPLIIPVL YLTNLTHRSR BACU008713/1-1557 VWSCAVTGRP GLTYQEALES EKKARQNLQS FPEPLIIPVL YLTNLTHRSR 101 150 ENSP00000353458/1-1556 LHEICDDIFA YVKDRYFVEE TVEVIRNNGA RLQCRILEVL PPSHQNGFAN ENSTTRP00000000874/1-1549 LHEICDDIFA YVKDRYFVKE TVEVSRNNGA RLQCRILEVL PPSHQNGFAN ENSBTAP00000026857/1-1427 ---------- ---------- ---------- RLQCRILEVL PPSHQNGFAN bmy_14679T0/1-1054 LHEICDDIFA YVKDRYFVEE TVEVIRNNGA ---------- ---------- BACU008713/1-1557 LHEICDDIFA YVKDRYFVEE TVEVIRNNGA RLQCRILEVL PPSHQNGFAN 151 200 ENSP00000353458/1-1556 GHVNSVDGET IIISDSDDSE TQSCSFQNGK KKDAIDPLLF KYKVQPTKKE ENSTTRP00000000874/1-1549 GHVSNIDGET IIISDSDDSE TQDSSFQNGK KKDT-DP-IF KYKVQPTKKE ENSBTAP00000026857/1-1427 GHVSSVDGET IVISDSDDSE TQNSSFQNGK KKDAIDPLLF KYKVQPTKKE bmy_14679T0/1-1054 ---------- ---------- ---------- ---------- ---------- BACU008713/1-1557 GHVSNIDGET IIISDSDDSE TQNSSFQNGK KKDTIDPLLF KYKVQPTKKE 201 250 ENSP00000353458/1-1556 LHESAIVKAT QISRRKHLFS RDKLKLFLKQ HCEPQDGVIK IKASSLSTYK ENSTTRP00000000874/1-1549 LYECAIVKAT QIS-IKHQFS REK-KLF-DP HCEPQN-IFR IMASSLSTYK ENSBTAP00000026857/1-1427 LYECAIVKAT QISRRKHLFS RDKLKLFLKQ HCEPQDGVIK IKASSLSTYK bmy_14679T0/1-1054 ---------- --SRRKHLFS RDKLKLFLKQ HCEPQDGVIK IKASSLSTYK BACU008713/1-1557 LYECAIVKAT QISRRKHLFS RDKLKLFLKQ HCEPQDGVIK IKASSLSTYK 251 300 ENSP00000353458/1-1556 IAEQDFSYFF PDDPPTFIFS PANRRRGRPP KRIHISQEDN VANKQTLASY ENSTTRP00000000874/1-1549 IAEQDFSYFF PDDPPTFIFS LANRRRGRPP KRVSVSQEDS IANKQTVAGY ENSBTAP00000026857/1-1427 IAEQDFSYFF PDDPPTFIFS PANRRRGRPP KRISVSQEDS IASKQTIAGY bmy_14679T0/1-1054 IAEQDFSYFF PDDPPTFIFS LANRRRGRPP KRVSVSQEDS IANKQTVAGY BACU008713/1-1557 IAEQDFSYFF PDDPPTFIFS LANRRRGRPP KGVSVSQEDS IANKQTVAGY 301 350 ENSP00000353458/1-1556 RSKATKERDK LLKQEEMKSL AFEKAKLKRE KADALEAKKK EKEDKEKKRE ENSTTRP00000000874/1-1549 RNRATKERDK LLKQ-EMKSL AFEKAKLKRE KADALEAKKK EKEDKEKKKE ENSBTAP00000026857/1-1427 RNKTTKERDK LLKQEEMKSL AFEKAKLKRE KADALEAKKK EKEDKEKKKE bmy_14679T0/1-1054 RNRATKERDK LLKQEEMKSL AFEKAKLKRE KADALEAKKK EKEDKEKKKE BACU008713/1-1557 RNRATKERDK LLKQEEMKSL AFEKAKLKRE KADALEAKKK EKEDKEKKKE 351 400 ENSP00000353458/1-1556 ELKKIVEEER LKKKEEKERL KVEREKEREK LREEKRKYVE YLKQWSKPRE ENSTTRP00000000874/1-1549 ELKKIVEEER LKKKEEKERL KIEREKEREK LREEKKKYME YLKQWSKPRE ENSBTAP00000026857/1-1427 ELKKIVEKER LKKKEEKERL KIEREKEREK LREEKKKYME YLKQWSKPRE bmy_14679T0/1-1054 ELKKIVEEER LKKKEEKERL KIEREKVK-- ---------- ---------- BACU008713/1-1557 ELKKIVEEER LKKKEEKERL KIEREKEREK LREEKKKYME YLKQWSKPRE 401 450 ENSP00000353458/1-1556 DMECDDLKEL PEPTPVKTRL PPEIFGDALM VLEFLNAFGE LFDLQDEFPD ENSTTRP00000000874/1-1549 DMECDDLKEL PEPTPVKTRL PPEIFGDALM VLEFLNAFGE LFDLQDEFPE ENSBTAP00000026857/1-1427 DMECDDLKEL PEPTPVKTRL PPEIFGDALM VLEFLNAFGE LFDLQDEFPE bmy_14679T0/1-1054 ---HESL--- ---------- -------CLT DQEGLNNAG- ---------- BACU008713/1-1557 DMECEDLKEL PEPTPVKTRL PPEIFGDALM VLEFLNAFGE LFDLQDEFPE 451 500 ENSP00000353458/1-1556 GVTLEVLEEA LVGNDSEGPL CELLFFFLTA IFQAIAEEEE EVAKEQLTDA ENSTTRP00000000874/1-1549 GVTLEVLEEA LVGNDSEGPL CELLFFFLTA IFQAIAEEEE EVAKEQITDA ENSBTAP00000026857/1-1427 GVTLEVLEEA LVGNDSEGPL CELLFFFLTA IFQAIAEEEE EVAKEQITDA bmy_14679T0/1-1054 ---LEVLEEA LVGNDSEGPL CELLFFFLTA IFQAIAEEEE EVAKEQITDA BACU008713/1-1557 GVTLEVLEEA LVGNDSEGPL CELLFFFLTA IFQAIAEEEE EVAKEQITDA 501 550 ENSP00000353458/1-1556 DTKDLTEALD EDADPTKSAL SAVASLAAAW PQLHQGCSLK SLDLDSCTLS ENSTTRP00000000874/1-1549 DTKDLTEALD EDADPTKSAL SAVASLAAAW PQLHQGCSLK SLDLDSCTLS ENSBTAP00000026857/1-1427 DTKDLTEALD EDTDPTKSAL SAVASLAAAW PQLHQGCSLK SLDLDSCTLS bmy_14679T0/1-1054 DTKDLTEALD EDADPTKSAL SAVATLAAAW PQLHQGCSLK SLDLDSCTLS BACU008713/1-1557 DTKDLTEALD EDADPTKSAL SAVATLAAAW PQLHQGCSLK SLDLDSCTLS 551 600 ENSP00000353458/1-1556 EILRLHILAS GADVTSANAK YRYQKRGGFD ATDDACMELR LSNPSLVKKL ENSTTRP00000000874/1-1549 EILRLHILAS GADVTSANAK YRYQKRGGFD ATDDACMELR LSNPSLVKKL ENSBTAP00000026857/1-1427 EILRLHILAS GADVTSANAK YRYQKRGGFD ATDDACMELR LSNPSLVKKL bmy_14679T0/1-1054 EILRLHILAS GADVTSANAK YRYQKRGGFD ATDDACMELR LSNPSLVKKL BACU008713/1-1557 EILRLHILAS GADVTSANAK YRYQKRGGFD ATDDACMELR LSNPSLVKKL 601 650 ENSP00000353458/1-1556 SSTSVYDLTP GEKMKILHAL CGKLLTLVST RDFIEDYVDI LRQAKQEFRE ENSTTRP00000000874/1-1549 SSTSVYDLTP GEKMKILHAL CGKLLTLVST RDFIEDYVDI LRQAKQEFRE ENSBTAP00000026857/1-1427 SSTSVYDLTP GEKMKILHAL CGKLLTLVST RDFIEDYVDI LRQAKQEFRE bmy_14679T0/1-1054 SSTSVYDLTP GEKMKILHAL CGKLLTLVST RDFIEDYVDI LRQAKQEFRE BACU008713/1-1557 SSTSVYDLTP GEKMKILHAL CGKLLTLVST RDFIEDYVDI LRQAKQEFRE 651 700 ENSP00000353458/1-1556 LKAEQHRKER EEAAARIRKR KEEKLKEQEQ KMKEKQEKLK EDEQRNSTAD ENSTTRP00000000874/1-1549 LKAEQHRKER EEAAARIRKR KEEKLKEQEQ KMKEKQEKLK EDEQRNSVAD ENSBTAP00000026857/1-1427 LKAEQHRKER EEAAARIRKR KEEKLKEQEQ KMKEKQEKLK EDEQRNSIAD bmy_14679T0/1-1054 LKAEQHRKER EEAAARIRKR KEEKLKEQEQ KMKEKQEKLK EDEQRNSVAD BACU008713/1-1557 LKAEQHRKER EEAAARIRKR KEEKLKEQEQ KMKEKQEKLK EDEQRNSVAD 701 750 ENSP00000353458/1-1556 ISIGEEERED FDTSIESKDT EQKELDQDMV TEDEDDPGSH KRGRRGKRGQ ENSTTRP00000000874/1-1549 TSIGEEERED FDTSTEGKEI EQKEQDQDTV TEDEDDPGSH KRSRRGKRGQ ENSBTAP00000026857/1-1427 ISVGEEERED FDTSTESKEI EQKEQDQDTV SEDEDDPGPH KRGRRGKRGQ bmy_14679T0/1-1054 ISIG----ED FDTSTESKEI EQKEQDQDTV TEDEDDPGSH KRSRKGKRGQ BACU008713/1-1557 ISVGEEERED FDTSTESKEI EQKEQDQDTV TEDEDDPGAH KRSRRGRRGQ 751 800 ENSP00000353458/1-1556 NGFKEFTRQE QINCVTREPL TADEEEALKQ EHQRKEKELL EKIQSAIACT ENSTTRP00000000874/1-1549 NGFKECTRQE EVNCVTREPL TADEEEALKQ EHQRKEKELL EKIQSAIACT ENSBTAP00000026857/1-1427 NGFKEFTRQE EVNCITREPL TAEEEEALKQ EHQRKEKELL EKIQSAIACT bmy_14679T0/1-1054 NGFKECTRQE EVNCVTREPL TADEEEALKQ EHQRKEKELL EKIQSAIACT BACU008713/1-1557 NGFKECTRQE EVNCVTREPL TADEEEALKQ EHQRKEKELL EKIQSAIACT 801 850 ENSP00000353458/1-1556 NIFPLGRDRM YRRYWIFPSI PGLFIEEDYS GLTEDMLLPR PSSFQNNVQS ENSTTRP00000000874/1-1549 NIFPLGRDRM YRRYWIFPSI PGLFIEEDYS GLTEDMLLPR SSSFQDNVQP ENSBTAP00000026857/1-1427 NIFPLGRDRM YRRYWIFPSI PGLFIEEDYS GLTEDMLLPR PSSFQDNVQS bmy_14679T0/1-1054 NIFPLGRDRM YRRYWIFPSI PGLFIEEDYS GLTEDMLLPR PSSFQDNVQS BACU008713/1-1557 NIFPLGRDRM YRRYWIFPSI PGLFIEEDYS GLTEDMLLPR PSSFQDNVQS 851 900 ENSP00000353458/1-1556 QDPQVSTKTG EPLMSESTSN IDQGPRDHSV QLPKPVHKPN RWCFYSSCEQ ENSTTRP00000000874/1-1549 QDPQVSTKTG DSLMSESTSS IDQGPCDDSV QLPKPVHKPN RWCFYSSCEQ ENSBTAP00000026857/1-1427 QAPQVSTKTG DSLMSESTSS IDHGPYDDTV QLPKPVHKPN RWCFYSSCEQ bmy_14679T0/1-1054 QDPQVSTKTG DSLMSESTSS IDQGPCDDSV QLPKPVHKPN RWCFYSSCEQ BACU008713/1-1557 QDPQVSTKTG DSLMSESTSS IDQGPCDDSV QLPKPVHKPN RWCFYSSCEQ 901 950 ENSP00000353458/1-1556 LDQLIEALNS RGHRESALKE TLLQEKSRIC AQLARFSEEK FHFSDKPQPD ENSTTRP00000000874/1-1549 LDQLIEALNS RGHRESALKE TLLQEKRRIC AQLARFSEEK FHFSDKPQTD ENSBTAP00000026857/1-1427 LDQLIEALNS RGHRESALKE TLLQEKSRIC AQLSRFSEEK FHFSDKPQTD bmy_14679T0/1-1054 LDQLIEALNS RGHRESALKE TLLQEKCRIY AQLARFSEEK FHFSDKPQTD BACU008713/1-1557 LDQLIEALNS RGHRESALKE TLLQEKRRIY AQLARFSEEK FHFSDKPQTD 951 1000 ENSP00000353458/1-1556 SKPTYSRGRS SNAYDPSQMC AEKQLELRLR DFLLDIEDRI YQGTLGAIKV ENSTTRP00000000874/1-1549 SKPTYSRGRS SNAYDPSQMS AERQLELRLR DFLLDIEDRI YQGTLGAIKV ENSBTAP00000026857/1-1427 SKPTYSRGRS SSVYDPSQMS AERQLELRLR DFLLDIEDRI YQGTLGAIKV bmy_14679T0/1-1054 SKPTYSRGRS SNAYDPSQMS AERQLELRLR DFLLDIEDRI YQGTLGAIKV BACU008713/1-1557 SKPAYSRGRS SNAYDPSQMS AERQLELRLR DFLLDIEDRI YQGTLGAIKV 1001 1050 ENSP00000353458/1-1556 TDRHIWRSAL ESGRYELLSE ENKENGIIKT VNEDVEEMEI DEQTKVIVKD ENSTTRP00000000874/1-1549 TDRNIWRSAL ESGRYELLNE ENKENGIIKT VNEDVEEMEI DEQAKVIVKD ENSBTAP00000026857/1-1427 TDRHLWRSAL ENGQYELLNE ENKENGIIKT VNEDAEEMEI DEQAKVIVKD bmy_14679T0/1-1054 TDRNVWRSAL ESGRYELLNE ENKENGIIKT VNEDVEEMEI DEQAKVIVKD BACU008713/1-1557 TDRNVWRSAL ESGRYELLNE ENKENGIIKT VNEDVEEMEI DEQAKVIVKD 1051 1100 ENSP00000353458/1-1556 RLLGIKTETP STVSTNASTP QSVSSVVHYL AMALFQIEQG IERRFLKAPL ENSTTRP00000000874/1-1549 RLLGIKTESP STVSTNASTP QSVSNVVHYL AMALFQIEQG IERRFLKAPL ENSBTAP00000026857/1-1427 RLLGIKTESP STVSTNASTP QSVSNVVHHL AMALFQIEQG IERRFLKAPL bmy_14679T0/1-1054 RLLGIKTESP STVSTNASTP QSVSNVVHYL AMALFQIEQG IERRFLKAPL BACU008713/1-1557 RLLGIKTESP STVSTNASTP QSVSNVVHYL AMALFQIEQG IERRFLKAPL 1101 1150 ENSP00000353458/1-1556 DASDSGRSYK TVLDRWRESL LSSASLSQVF LHLSTLDRSV IWSKSILNAR ENSTTRP00000000874/1-1549 DASDSGRSYK TVLDRWRESL LSSASLSQVF LHLSTLDRSV IWSKSILNAR ENSBTAP00000026857/1-1427 DASDSGRSYK TVLDRWRESL LSSASLSQVF LHLSTLDRSV IWSKSILNAR bmy_14679T0/1-1054 ---------- ---------- ---------- ---------- ---------- BACU008713/1-1557 DASDSGRSYK TVLDRWRESL LSSASLSQVF LHLSTLDRSV IWSKSILNAR 1151 1200 ENSP00000353458/1-1556 CKICRKKGDA ENMVLCDGCD RGHHTYCVRP KLKTVPEGDW FCPECRPKQR ENSTTRP00000000874/1-1549 CKICRKKGDA ENMVLCDGCD RGHHTYC-RP KLKTVPEGDW FCPECRPKQR ENSBTAP00000026857/1-1427 CKICRKKGDA ENMVLCDGCD RGHHTYCVRP KLKTVPEGDW FCPECRPKQR bmy_14679T0/1-1054 ---------- ---------- ---------- ---------- ---ECRPKQR BACU008713/1-1557 CKICRKKGDA ENMVLCDGCD RGHHTYCVRP KLKTVPEGDW FCPECRPKQR 1201 1250 ENSP00000353458/1-1556 SRRLSSRQRP SLESDEDVED SMGGEDDEVD GDEEEGQSEE EEYEVEQDED ENSTTRP00000000874/1-1549 SRRLSSRQRP SLESDDEMEG SMEGEDDEVD DDDEEGPSEE EEYEVEQDEE ENSBTAP00000026857/1-1427 SRRLSSRQRP SLESDDEMEG SMEGEDDEVD DDEEEGQSEE EEYEVEQDED bmy_14679T0/1-1054 SRRLSSRQRP SLESDDEMED SMEGEDDEVD DDDEEGQSEE EEYEVEQDED BACU008713/1-1557 SRRLSSRQRP SLESDDEMED SMEGEDDEVD DDDEEDQSEE EEYEVEQDED 1251 1300 ENSP00000353458/1-1556 DSQEEEEVSL PKRGRPQVRL PVKTRGKLSS SFSSRGQQQE PGRYPSRSQQ ENSTTRP00000000874/1-1549 DSQEEEDVSP PKRGRPQVRL PIKTRGRLSS SFSSRGQRQD PGRYTSRSQQ ENSBTAP00000026857/1-1427 DSQEEEEVSP PKRGRPQVRL PIKTRGRLSS SFSSRGQRQD PGRYTSRSQQ bmy_14679T0/1-1054 DSQEEEDV-- ---------- ---------- ---------- ---------- BACU008713/1-1557 DSQEEEDVSP PKRRRTQVTL PIKTRGRLSS SFSSRGQRQD PGRYTSRSQQ 1301 1350 ENSP00000353458/1-1556 STPKTTVSSK -TGRSLRKIN SAPPTETKSL RIASRSTRHS HGPLQADVFV ENSTTRP00000000874/1-1549 NTPKTTVSSK ATGRSLRKIK SAPPTETKSL RIASRSTRQS HGPLQAGVFM ENSBTAP00000026857/1-1427 STPKTTASSK TTGRSLRKIK SAPPTETKSL RIASRSTRQS HGALQADVFV bmy_14679T0/1-1054 ---------- ---RSYTQI- ---------- ---------- ---------L BACU008713/1-1557 STPKTTVSSK ATGRSLRKIK SAPPTETKSL RIASRSTRQS HGPLQADVFV 1351 1400 ENSP00000353458/1-1556 ELLSPRRKRR GRKSANNTPE NSPNFPNFRV IATKSSEQSR SVNIASKLSL ENSTTRP00000000874/1-1549 ELLSPRRKRR GRKSANNTPE NSPSFPNFRV IATKSSERSR SLNVASKLSL ENSBTAP00000026857/1-1427 ELLSPRRKRR GRKSANNTPE NSPSFPNFRV IAAKSSEQSS PLNVASKLSL bmy_14679T0/1-1054 VILAVYRER- ---------- ---------- ---------- ---------- BACU008713/1-1557 ELLSPRRKRR GRKSANYTPE NSPNFPNFRV IATKSSERSR SLNVASKLSL 1401 1450 ENSP00000353458/1-1556 QESESKRRCR KRQSPEPSPV TLGRRSSGRQ GGVHELSAFE QLVVELVRHD ENSTTRP00000000874/1-1549 QDSESKRRGR KRQSTESSPV TPNRRSSGRQ GGVHELSAFE QLVVELVRHD ENSBTAP00000026857/1-1427 QDSESKRRGR KRQSAESSPM TLNRRSSGRQ GGVHELSAFE QLVVELVRHD bmy_14679T0/1-1054 -----ERNAR KH-------- ---------- ---------- ---------- BACU008713/1-1557 QDSESKRRGR KRQSTESSPM TLNRRSSGRQ GGVHELSAFE QLVVELVRHD 1451 1500 ENSP00000353458/1-1556 DSWPFLKLVS KIQVPDYYDI IKKPIALNII REKVNKCEYK LASEFIDDIE ENSTTRP00000000874/1-1549 DSWPFLKLVS KIQVPDYYDI IKKPIALNII REKVNKCEYK LASEFIDDIE ENSBTAP00000026857/1-1427 DSWPFLKLVS KIQVPDYYDI IKKPIALNII REKVNKCEYK LASEFIDDIE bmy_14679T0/1-1054 ---------- ---------- ---------- ---------- --------IV BACU008713/1-1557 DSWPFLKLVS KIQVPDYYDI IKKPIALNII REKVNKCEYK LASEFIDDIE 1501 1550 ENSP00000353458/1-1556 LMFSNCFEYN PRNTSEAKAG TRLQAFFHIQ AQKLGLHVTP SNVDQVSTPP ENSTTRP00000000874/1-1549 LMFSNCFEYN PRNTSEAKAG TRLQAFFHIQ AQKLGLAVTP GNVDQVSTPP ENSBTAP00000026857/1-1427 LMFSNCFEYN PRNTSEAKAG TRLQAFFHIQ AQKLGLHVTS GNVDQVSTPP bmy_14679T0/1-1054 FLYS------ ---------- ------YRIS T--------- ---------- BACU008713/1-1557 LMFSNCFEYN PRNTSEAKAG TRLQAFFHIQ AQKLGLNVTP GSVDQVSTPP 1551 1600 ENSP00000353458/1-1556 AAKKSRI ENSTTRP00000000874/1-1549 VAKKSRI ENSBTAP00000026857/1-1427 AAKKSRI bmy_14679T0/1-1054 ------- BACU008713/1-1557 AAKKSRI