KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:41 2014 Check: 00 .. Name: ENSTTRP00000015449/1-1128 Len: 1226 Check: 5498 Weight: 1.00 Name: BACU020427/1-1107 Len: 1226 Check: 5645 Weight: 1.00 Name: ENSP00000352575/1-1177 Len: 1226 Check: 1257 Weight: 1.00 Name: bmy_21643T0/1-661 Len: 1226 Check: 2444 Weight: 1.00 Name: ENSBTAP00000026867/1-1194 Len: 1226 Check: 2722 Weight: 1.00 // 1 50 ENSTTRP00000015449/1-1128 MVPCWNHGNI TRSKAEELLS RTGKDGSFLV RASESVSRAY ALCVLYRNCV BACU020427/1-1107 MVPCWNHGNI TRSKAEELLS RTGKDGSFLV RASESVSRAY ALCVLYRNCV ENSP00000352575/1-1177 MVPCWNHGNI TRSKAEELLS RTGKDGSFLV RASESISRAY ALCVLYRNCV bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 MVPCWNHGNI TRSKAEELLS RTGKDGSFLV RASESISRAY ALCVLYRNCV 51 100 ENSTTRP00000015449/1-1128 YTYRILPNED DKFTVQASEG VPVRFFTKLD QLIEFYKKEN MGLVTHLQYP BACU020427/1-1107 YTYRILPNED DKFTVQASEG VPMRFFTKLD QLIEFYKKEN MGLVTHLQYP ENSP00000352575/1-1177 YTYRILPNED DKFTVQASEG VSMRFFTKLD QLIEFYKKEN MGLVTHLQYP bmy_21643T0/1-661 ---------- ---------- --MRFFTKLD QLIEFYKKEN MGLVTHLQYP ENSBTAP00000026867/1-1194 YTYRILPNED DKFTVQASEG VPMRFFTKLD QLIEFYKKEN MGLVTHLQYP 101 150 ENSTTRP00000015449/1-1128 VPLEEDDACD EPEEET-XXX XXX------- --XXXXXXXX XXXXXXXXXX BACU020427/1-1107 VPLEEEDAGD EPEEET--GS LSRCANVLLG PVSQLETLR- IQTSSSTCYC ENSP00000352575/1-1177 VPLEEEDTGD DPEEDTVESV VSP------- --PELPPRN- IPLTASSCEA bmy_21643T0/1-661 VPLEEEDAGD EPEEET-EGV LSP------- --PELPPRN- IHLSAGPCEA ENSBTAP00000026867/1-1194 VPLEEEDTGD EPEEET-EGA VSP------- --PELPPRNI IPLPAGTCEA 151 200 ENSTTRP00000015449/1-1128 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLPKEH LKAIQDYLST BACU020427/1-1107 WCLWFRNR-- ------RSML LSLLFFFFR- -----LPEEH LKAIQDYLST ENSP00000352575/1-1177 KEVPFSNENP RATETSRPSL SETLFQRLQS MDTSGLPEEH LKAIQDYLST bmy_21643T0/1-661 KEVPVSNENP RATEVSRPSL SETLFQRLQT MDTSGLPEEH LKAIQDYLST ENSBTAP00000026867/1-1194 KEAPASTENP RAAEVGRPSL SETLFQRLQT MDTSGIPEEH LKAIQDYLST 201 250 ENSTTRP00000015449/1-1128 QLTLDSDFVK SGSCSLPHLK KLTALLCKEL YGVQLRVI-- --GWWMVELA BACU020427/1-1107 QLTLDSDFVK SGSCSLPHLK KLTALLCKEL YGFTYRGS-- --SLVLVRTE ENSP00000352575/1-1177 QLAQDSEFVK TGSSSLPHLK KLTTLLCKEL YGQMLRTVP- --GIGKVKEE bmy_21643T0/1-661 QLALDSDFVK SGSCSLPHLK KLTALLCKEL YGEVTRTLPT LESLQRLFDQ ENSBTAP00000026867/1-1194 QLSLDSDFVK SGSSSLPHLK KLTALLCKEL YGEVIRALPT LESLQRLFDQ 251 300 ENSTTRP00000015449/1-1128 DMGGGKTNRG H--------- ---------- ----YTSW-- -ELSHQPRKP BACU020427/1-1107 GVGGSQEVDQ Y--------- ---------- ----RQAWIS AGACPAGKDP ENSP00000352575/1-1177 DHVPGEAN-- -------PIN MVSKLSQLTS LLSSIEDKVK ALLHEGPESP bmy_21643T0/1-661 QLSPGLRPRP Q--------- ---------- --------VK ALLHEGPESS ENSBTAP00000026867/1-1194 QLSPGLRPRP QVPGEASPIN MVAKLSQLTS LLSSIEDKVK ALLHEGPESP 301 350 ENSTTRP00000015449/1-1128 RKRQGCIC-- ---------- ----LGVIHA LALEAGG--- ----KVTTEG BACU020427/1-1107 -----CLCQS GREPNGWAEI DGQRNQLPGK MIKPQNGCPD EPVEPSPWGG ENSP00000352575/1-1177 HRP--SLI-- ---PPVTFEV KAESLGIPQK MQLKVDVESG KLIIKKSKDG bmy_21643T0/1-661 HRR--SLI-- ---PPVTFEV KSESLGIPQK LQLKVDVESG KLIIKKSKDG ENSBTAP00000026867/1-1194 HRR--SLI-- ---PPVTFEV KAESLGIPQK LQLKVDVESG KLIIKKSKDS 351 400 ENSTTRP00000015449/1-1128 SAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ------XXXX BACU020427/1-1107 SQGRSFSLAQ DAKTSSCSKW GHDYVNLSHP PPTSVL---- ---------- ENSP00000352575/1-1177 SEDKFYSHKK ILQLIKSQKF LNKLVILVET EKEKILRKEY VFADSKKREG bmy_21643T0/1-661 SEDKFYSHKK ILQLIKSQKF LNKLVILVET EKEKTVRKEY ------KREG ENSBTAP00000026867/1-1194 SEDKFYTHKK ILQLIKSQKF LNKLVILVET EKEKTLRKEY VFADSKKREG 401 450 ENSTTRP00000015449/1-1128 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XNAPPPKKIT SWFLSKGQGK BACU020427/1-1107 ---------- ---NSPDVPL THLVLGFAVE GNAPPPKKIT SWFLSKGQGK ENSP00000352575/1-1177 FCQLLQQMKN KHSEQPEPDM ITIFIGTWNM GNAPPPKKIT SWFLSKGQGK bmy_21643T0/1-661 FCQLLQQMKN KHSEQPEPDM ITIFIGTWNM GNAPPPKKIT SWFLSKGQGK ENSBTAP00000026867/1-1194 FCQLLQQMKN KHSEQPEPDM ITIFIGTWNM GNAPPPKKIT SWFLSKGQGK 451 500 ENSTTRP00000015449/1-1128 TRDDSADYIP HDIYVIGTQE DPLGEKEWLE ILKHSLQEIT SMTFKTVAIH BACU020427/1-1107 TRDDSADYIP HDIYVIGTQE DPLGEKEWLE ILKHSLQEIT SMTFKTIAIH ENSP00000352575/1-1177 TRDDSADYIP HDIYVIGTQE DPLSEKEWLE ILKHSLQEIT SVTFKTVAIH bmy_21643T0/1-661 TRDDSADYIP HDIYVIGTQE DPLGEKEWLE ILKHSLQEIT SMTFKTIAIH ENSBTAP00000026867/1-1194 TRDDSADYIP HDIYVIGTQE DPLGEKEWLE ILKHSLQEVT SMTFKTIAIH 501 550 ENSTTRP00000015449/1-1128 TLWNIRIAVL AKPEHENRIS HVCTNNVKTG IANTLGNKGA VGVSFMFNGT BACU020427/1-1107 TLWNIRIVVL AKPEHENRIS HICTNNVKTG IANTLGNKGA VGVSFMFNGT ENSP00000352575/1-1177 TLWNIRIVVL AKPEHENRIS HICTDNVKTG IANTLGNKGA VGVSFMFNGT bmy_21643T0/1-661 TLWNIRIVVL AKPEHENRIS HICTNNVKTG IANTLGNKGA VGVSFMFNGT ENSBTAP00000026867/1-1194 TLWNIRIVVL AKPEHENRIS HICTDNVKTG IANTLGNKGA VGVSFMFNGT 551 600 ENSTTRP00000015449/1-1128 SLGFVNSHLT SGSEKKLRRN QNYMNILRFL ALGDKKLSSF NITHRFTHLF BACU020427/1-1107 SLGFVNSHLT SGSEKKLRRN QNYMNILRFL ALGDKKLSSF NITHRFTHLF ENSP00000352575/1-1177 SLGFVNSHLT SGSEKKLRRN QNYMNILRFL ALGDKKLSPF NITHRFTHLF bmy_21643T0/1-661 SLGFVNSHLT SGSEKKLRRN QNYMNILRFL ALGDKKLSSF NITHRFTHLF ENSBTAP00000026867/1-1194 SLGFVNSHLT SGSEKKLRRN QNYMNILRFL ALGDKKLSSF NITHRFTHLF 601 650 ENSTTRP00000015449/1-1128 WLGDLNYRVE LPTWEAEAII QKIKQQQYAD LLAHDQLLME RKEQKVFLHF BACU020427/1-1107 WLGDLNYRVE LPAWEAETII QKIKQQQYAD LLSHDQLLME RKERKVFLHF ENSP00000352575/1-1177 WFGDLNYRVD LPTWEAETII QKIKQQQYAD LLSHDQLLTE RREQKVFLHF bmy_21643T0/1-661 WLGDLNYRVE LPAWEAETII QKIKQQQYAA LLSHDQLLME RKEQKVFLHF ENSBTAP00000026867/1-1194 WLGDLNYRVE LPTWEAETII QKIRQQQYAD LLSHDQLLME RKEQKVFLHF 651 700 ENSTTRP00000015449/1-1128 EEEEITFAPT YRFERLTRDK YAYTKQKATG MKYNLPSWCD RVLWKSYPLV BACU020427/1-1107 EEEEITFAPT YRFERLTRDK YAYTKQKATG MKYNLPSWCD RVLWKSYPLV ENSP00000352575/1-1177 EEEEITFAPT YRFERLTRDK YAYTKQKATG MKYNLPSWCD RVLWKSYPLV bmy_21643T0/1-661 EEEEITFAPT YRFERLTRDK YAYTKQKATG MKYNLPSWCD RVLWKSYPLV ENSBTAP00000026867/1-1194 EEEEITFAPT YRFERMTRDK YAYTKQKATG MKYNLPSWCD RVLWKSYPLV 701 750 ENSTTRP00000015449/1-1128 HVVCQSYGST SDIMTSDHSP VFATFEAGVT SQFVSKNGPG TVDSQGQIEF BACU020427/1-1107 HVVCQSYGST SDIMTSDHSP VFATFEAGVT SQFVSKNGPG TVDSEGQIEF ENSP00000352575/1-1177 HVVCQSYGST SDIMTSDHSP VFATFEAGVT SQFVSKNGPG TVDSQGQIEF bmy_21643T0/1-661 HVVCQSYGST SDIMTSDHSP VFATFEAGVT SQFVSKNGPG TVDSQGQVEF ENSBTAP00000026867/1-1194 HVVCQSYGST SDIMTSDHSP VFATFEAGVT SQFVSKNGPG TTDSQGQIEF 751 800 ENSTTRP00000015449/1-1128 LRCYATLKTK SQTKFYLEFH SSCLESFVKS QEGENEEGSE GELVVKFGET BACU020427/1-1107 LRCYATLKTK SQTKFYLEFH SSCLESFVKS QEGENEEGSE GELVVKFGET ENSP00000352575/1-1177 LRCYATLKTK SQTKFYLEFH SSCLESFVKS QEGENEEGSE GELVVKFGET bmy_21643T0/1-661 LRCYATLKTK SQTKFYLEFH SSCLEST--- ---------- ---------- ENSBTAP00000026867/1-1194 LGCYATLKTK SQTKFYLEFH SSCLESFVKS QEGENEEGSE GELVVKFGET 801 850 ENSTTRP00000015449/1-1128 LPKLKPIISD PEYLLDQHIL ISIKSSDSDE SYXXX--XXX XXXXXXXXXX BACU020427/1-1107 LPKLKPIISD PEYLLDQHIL ISIKSSDSDE SYGKGPRTGA AAIVHFPASA ENSP00000352575/1-1177 LPKLKPIISD PEYLLDQHIL ISIKSSDSDE SYGEG--CIA LRLEATETQL bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 LPKLKPIISD PEYLLDQHIL ISIKSSDSDE SYGEG--CIA LRLEATETQL 851 900 ENSTTRP00000015449/1-1128 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXFVKTE RDESSVPKSL BACU020427/1-1107 CQGKPLCRPG PNPGSWALAR SHMLFPGPF- --LADFVKTE RDESSAPKSL ENSP00000352575/1-1177 PIYTPLTHHG ELTGHFQGEI KLQTSQGKTR EKLYDFVKTE RDESSGPKTL bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 PIYTPLTHHG EMTGHFRGNI KLQTSQGKMR EKLYDFVKTE RDESSGPKSL 901 950 ENSTTRP00000015449/1-1128 KSLTSQDPMK QWEPANRVPP CSGSSITEII NPNYMGVGAF N-----YMKQ BACU020427/1-1107 KSLTSQDPMK QWEPANRVPP CGGSSITEII NPNYMGVGAF G-----HMKQ ENSP00000352575/1-1177 KSLTSHDPMK QWEVTSRAPP CSGSSITEII NPNYMGVGPF GPPMPLHVKQ bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 KSLTSHDPMK QWEPANRVPP CSSSSITEII NPSYMGVGNF G-----HLKQ 951 1000 ENSTTRP00000015449/1-1128 TPSPDQQPTA WSYDQPLKDS SLGPGRGESP PTPPSQPPLS PKKFSSSTAT BACU020427/1-1107 TLSPDQQPTA WSYDQPLKDP SLGPGRGESP PTPPSQPPIS PKKFSSSTAT ENSP00000352575/1-1177 TLSPDQQPTA WSYDQPPKDS PLGPCRGESP PTPPGQPPIS PKKFLPSTAN bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 TLSPDQQPTA WSYDPPLKDS TLGPGRGESP PTPPSQPPVS PKKFTSSTAM 1001 1050 ENSTTRP00000015449/1-1128 RGPCLRTQEP RPGDVGKSAG EPLLPEDPQL TKPEMFENPL YGSVSAFPKP BACU020427/1-1107 RGPCLRTQEP RPGDVGKSAG EPSPSEDPQL TKPEMFENPL YGSVSAFPKP ENSP00000352575/1-1177 RGLPPRTQES RPSDLGKNAG DTLPQEDLPL TKPEMFENPL YGSLSSFPKP bmy_21643T0/1-661 ---CLL---- ---------- ---------- -------NCL F--------- ENSBTAP00000026867/1-1194 RGPCLRTQES RPSDVVKSVA EPSPPEELQL TKPEMFENPL YGSVSAFPKP 1051 1100 ENSTTRP00000015449/1-1128 APRKEQESPK MLRKEPPPCP DPGILSPSIL LSKAQEAEGS KGTGKPA--- BACU020427/1-1107 APRKEQESPK MLRKEPPPCP DPGILSPSIL LSKAQEAEGG KGTGKPAPAP ENSP00000352575/1-1177 APRKDQESPK MPRKEPPPCP EPGILSPSIV LTKAQEADRG EGPGKQV--- bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 APRKEQESPK MLRKEPPPCP DPGIMSPSIL LSKAQEAEGS KGTGKPVPPP 1101 1150 ENSTTRP00000015449/1-1128 -------PAP RLRSFTCSSS TSEGRPPGGD KGSPGKSKAP AGSQ------ BACU020427/1-1107 APTPFLSPTP RLRSFTCSSY TAEGRPPGGD KGSQGKPKAP AGSQ------ ENSP00000352575/1-1177 -------PAP RLRSFTCSS- SAEGRAAGGD K-SQGKPKTP VSSQ------ bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 A--PFLSPTP RVRSFTCS-- TSEGRPPGGD K-SQGKPKTP AGSQVPVPVP 1151 1200 ENSTTRP00000015449/1-1128 VPVPAKRPIK PSRSELSQQP ---PVQRPPL PVKSPAVLHL QHSRGRDYRD BACU020427/1-1107 VPVPAKRPIK PSRSELSQQP ---PAQRPPL PVKSPAVLHL QHSRGRDYRD ENSP00000352575/1-1177 APVPAKRPIK PSRSEINQQT PPTPTPRPPL PVKSPAVLHL QHSKGRDYRD bmy_21643T0/1-661 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026867/1-1194 VPVPVKRPIK PSRSELSQQP LPAQGQRPPL PVKSPAVLHL QHSKSRDYRD 1201 1250 ENSTTRP00000015449/1-1128 NAELPHLAKH RPEDAPP--- GRAAMQ BACU020427/1-1107 ---------- ---------- ------ ENSP00000352575/1-1177 NTELPHHGKH RPEEGPPGPL GRTAMQ bmy_21643T0/1-661 ---------- ---------- ------ ENSBTAP00000026867/1-1194 NAELPHHAKH RPEDAPL--- SRTAMQ