KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:43 2014 Check: 00 .. Name: ENSP00000369346/1-536 Len: 540 Check: 9473 Weight: 1.00 Name: bmy_09246T0/1-295 Len: 540 Check: 9808 Weight: 1.00 Name: ENSTTRP00000012397/1-539 Len: 540 Check: 884 Weight: 1.00 Name: ENSBTAP00000026877/1-540 Len: 540 Check: 7289 Weight: 1.00 Name: BACU020039/1-539 Len: 540 Check: 4117 Weight: 1.00 // 1 50 ENSP00000369346/1-536 MLLLWVSVVA ALALAVLAPG AGEQRRRAAK ----APNVVL VVSDSFDGRL bmy_09246T0/1-295 ---------- ---------- ----MTESNN CFPYCSLIFM LSQ------- ENSTTRP00000012397/1-539 MLPLWVALVA VSALATPAPG AGGQRRGAVK AWPDAPNVVL VVSDSFDGRL ENSBTAP00000026877/1-540 MLLLWVSVVA ASALAAPAPG ADGQRRGAIQ AWPDAPNVLL VVSDSFDGRL BACU020039/1-539 MLLLWVAVVA VSALATPAPG AGGQRRGAVQ AWPDAPNVVL VVSDSFDGRL 51 100 ENSP00000369346/1-536 TFHPGSQVVK LPFINFMKTR GTSFLNAYTN SPICCPSRAA MWSGLFTHLT bmy_09246T0/1-295 ---------- --FLKLFK-- ---YLTVYLS F---CP---- ---------- ENSTTRP00000012397/1-539 TFYPGSQVVK LPFISFMKAH GTSFLNAYTN SPICCPSRAA MWSGLFTHLT ENSBTAP00000026877/1-540 TFYPGSQVVK LPFINFMKAH GTSFLNAYTN SPICCPSRAA MWSGLFTHLT BACU020039/1-539 TFYPGSQVVK LPFINFMKAH GTSFLNAYTN SPICCPSRAA MWSGLFTHLT 101 150 ENSP00000369346/1-536 ESWNNFKGLD PNYTTWMDVM ERHGYRTQKF GKLDYTSGHH SISNRVEAWT bmy_09246T0/1-295 ---------- ---------- ---------- ---------- -LSNRVEAWT ENSTTRP00000012397/1-539 ESWNNFKGLD PNYTTWMDVM EKHGYRTQKF GKLDYISGHH SISNRVEAWT ENSBTAP00000026877/1-540 ESWNNFKGLD PNYTTWMDVM EKHGYRTQKF GKLDYTSGHH SISNRVEAWT BACU020039/1-539 ESWNNFKGLD PNYTTWMDVM EKHGYRTQKF GKLDYTSGHH SISNRVEAWT 151 200 ENSP00000369346/1-536 RDVAFLLRQE GRPMVNLIRN RTKVRVMERD WQNTDKAVNW LRKEAINYTE bmy_09246T0/1-295 RDVAFLLRQE GRPMVNLVPK KT-------- ---------- ---------- ENSTTRP00000012397/1-539 RDVAFLLRQE GRPMVNLVPK KTKVRVMEGD WKNTDRAVNW LRKEAINYTQ ENSBTAP00000026877/1-540 RDVAFLLRQE GRPMVNLAPK KTKVRVMQVD WKNTDRAVNW LRKEASNSTQ BACU020039/1-539 RDVAFLLRQE GRPMVNLVPK KTKVRVMEGD WKNTDRAVNW LRKEAVNYTQ 201 250 ENSP00000369346/1-536 PFVIYLGLNL PHPYPSPSSG ENFGSSTFHT SLYWLEKVSH DAIKIPKWSP bmy_09246T0/1-295 ---------- ---------- ---------- ------KVSY DAIKIPKWSP ENSTTRP00000012397/1-539 PFVLYLGLNL PHPYPSPSSG ENFGSSTFHT SLYWLKKVSY DAIKIPKWSP ENSBTAP00000026877/1-540 PFVLYLGLNL PHPYPSPSSG ENFGSSTFHT SRYWLKKVSY DAIKIPKWSP BACU020039/1-539 PFFLYLGLNL PHPYPSPSSG ENFGSSTFHT SLYWLKKVSY DAIKIPKWSP 251 300 ENSP00000369346/1-536 LSEMHPVDYY SSYTKNCTGR FTKKEIKNIR AFYYAMCAET DAMLGEIILA bmy_09246T0/1-295 LSEMHPIDYY SSYTKNCTGK FTEKEIKDIR AFYYAMCAET DAMLGEIILA ENSTTRP00000012397/1-539 LSEMHPIDYY SSYTKNCTGK FTEKEIKDIR AFYYAMCAET DAMLGEIILA ENSBTAP00000026877/1-540 LSEMHPVDYY SSYTKNCTGK FTEKEIKNIR AFYYAMCAET DAMLGEIILA BACU020039/1-539 LSEMHPIDYY SSYTKNCTGK FTEKEIKDIR AFYYAMCAET DAMLGEIILA 301 350 ENSP00000369346/1-536 LHQLDLLQKT IVIYSSDHGE LAMEHRQFYK MSMYEASAHV PLLMMGPGIK bmy_09246T0/1-295 LHQLDLLQKT IVIYTSDHGE LAMEHRQFYK MSMYEASAHV PLLIMGPGIK ENSTTRP00000012397/1-539 LHQLDLLQKT TVIYTSDHGE LAMEHRQFYK MSMYEASAHV PLLIMGPGIK ENSBTAP00000026877/1-540 LRQLGLLQKT IVIYTSDHGE LAMEHRQFYK MSMYEASSHV PLLIMGPGIQ BACU020039/1-539 LHQLDLLQKT IVIYTSDHGE LAMEHRQFYK MSMYEASAHV PLLIMGPGIK 351 400 ENSP00000369346/1-536 AGLQVSNVVS LVDIYPTMLD IAGIPLPQNL SGYSLLPLSS ETFKNEHKVK bmy_09246T0/1-295 TNLQVSNVVS LVDIYPTML- ---------- ---------- ---------- ENSTTRP00000012397/1-539 TNLQVSNVVS LVDIYPTMLD IAGIPLPQNL SGYSLLPLSS EMLXXXXXXX ENSBTAP00000026877/1-540 ANLQVSSVVS LVDIYPTMLD IAGIPLPQNL SGYSLLPSSS EMFKNEQKFK BACU020039/1-539 TNLQVSNVVS LVDIYPTMLD IAGIPLPQNL SGYSLLPLSS -MFKNEQKFK 401 450 ENSP00000369346/1-536 NLHPPWILSE FHGCNVNAST YMLRTNHWKY IAYSDGASIL PQLFDLSSDP bmy_09246T0/1-295 ---------- ---------- ---------- ---------- ----DLSSDP ENSTTRP00000012397/1-539 XXXXXXXXXX XXXXXVNASA YMLRTNQWKY IAYSDGASVL PQLFDLSSDP ENSBTAP00000026877/1-540 NLHPPWILSE FHGCNVNAST YMLRTNQWKY IAYSDGASVL PQLFDLSSDP BACU020039/1-539 NLHPPWILSE FHGCNVNAST YMLRTNQWKY IAYSDGASVL PQLFDLSSDP 451 500 ENSP00000369346/1-536 DELTNVAVKF PEITYSLDQK LHSIINYPKV SASVHQYNKE QFIKWKQSIG bmy_09246T0/1-295 DELTNIATKF PEVTSSLDQK LRSIINYPQV SASVHRYNKE QFIKWKQSIG ENSTTRP00000012397/1-539 DELTNIATKF PEVTASLDQK LRSIINYPKV SASVHRYNKE QFIKWKQSIG ENSBTAP00000026877/1-540 DELTNIAAKF PEVTSSLDQK LRSIINYPKV SASVHQYNKE QFIKWKQSIG BACU020039/1-539 DELTNIATKF PEVTSSLDQK LRSIINYPQV SASVHQYNKE QFIKWKQSIG 501 550 ENSP00000369346/1-536 QNYSNVIANL RWHQDWQKEP RKYENAIDQW LKTHMNPRAV bmy_09246T0/1-295 QNYSDVIANL RWHQDWLKEP RKYENAIDQW LKIHSDPENI ENSTTRP00000012397/1-539 QNYSNVIANL RWHQDWLKEP RKYENAIDQW LKIHSDP-NI ENSBTAP00000026877/1-540 QNYSNVIANL RWHQDWLKKP KKYENAIDQW LKSHSDAKTI BACU020039/1-539 QNYSDVIANL RWHQDWLKEP RKYENAIDQW LKIHSDPENI