KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:44 2014 Check: 00 .. Name: ENSP00000406047/1-275 Len: 301 Check: 5624 Weight: 1.00 Name: ENSBTAP00000026883/1-272 Len: 301 Check: 4331 Weight: 1.00 Name: ENSTTRP00000012753/1-271 Len: 301 Check: 7616 Weight: 1.00 Name: bmy_12012T0/1-293 Len: 301 Check: 7495 Weight: 1.00 Name: BACU006790/1-259 Len: 301 Check: 8417 Weight: 1.00 // 1 50 ENSP00000406047/1-275 MSQKRQTKFQ NGKSKTSENS SAKREKGMVV NSK------- -EISDAVGQS ENSBTAP00000026883/1-272 MGQRRQTKSQ HAKPRTFRTS PVMFEKEIFF DSD------- -EIIDAVGQS ENSTTRP00000012753/1-271 MGQKRQAKFQ YGKSKTSRTS PVKFEKETIV DSD------- -EIFDAVGQS bmy_12012T0/1-293 MG-----KFQ YGKSKTSRTS PVKFEKETIV DSDERWKRQK KEIFDAVGQS BACU006790/1-259 -------RFQ YGKSKTSRTS PVKFEKETIV DSD------- -E-------- 51 100 ENSP00000406047/1-275 KFVLENLRHY TVHPNLAQYY KPLKATALQK FLAQNRKNTS FMLKVTQYDQ ENSBTAP00000026883/1-272 KFVLKNLHHY TVHPNLAQYY EPLKPTALQK FLARNRKIQS FTLKVIEYDQ ENSTTRP00000012753/1-271 KFVPENLHHY TVHPNLAQYY EPLKPTALHK FLARNRKIQS FTLKVTEYDQ bmy_12012T0/1-293 KFVLENLHHY TVHPNLAQYY EPLKPTALHK FLARNRKIQS FTLKVTEYDQ BACU006790/1-259 ---------- ------AQYY EPLKPTALHK FLARNRKIQS FTLKVTEYDQ 101 150 ENSP00000406047/1-275 DKTLLIMTNN PPPCSITQQD KESASKYFSK ELLLKVMESH HQHKPTENLW ENSBTAP00000026883/1-272 DKTLLILTNN PLPCPIDHQG KDVTPKYFSN ELLLK--ES- HQHKPTENFF ENSTTRP00000012753/1-271 DKTLLIMTNN PLPCSIDHQG KDTTSKYFSS ELLLKVMES- HQHKPTENFF bmy_12012T0/1-293 DKTLLIMTNN PLPCPIDHQG KDMISKYFSS ELLLK--ES- HQHKPTENFF BACU006790/1-259 DKTLLIMTNN PLPCPIDLQG KDMTSKYFSS ELLLK--ES- HQHKPTENFF 151 200 ENSP00000406047/1-275 LPRMPQKKKL RSKLKPIFPL ILSDDPTSKR EQWFRFSTDN DFKSEGKYSK ENSBTAP00000026883/1-272 LPLMPQKKNL RSGLKPVFPL MLLEDTKSKR EQWFRFSTDN DFKSEGKYSK ENSTTRP00000012753/1-271 LPLMYQKKKL RSGLKPVFPV TLLEDPKSKR EQWFRFSTDE DFKSEGKYSK bmy_12012T0/1-293 QPLMSQKKKL RSGLKPIFPV TLLEDPKSKR EQWFRFSTDK DFKSEGKYSK BACU006790/1-259 LPLMSQKKKL RSGLKPVFPV TLLEDPKSKR EQWFRFSTDK DFKSEGKYSK 201 250 ENSP00000406047/1-275 VYALRTQKKM YPQLTFAPVH ERDMRKDASK KSASERPISK VIREPLTLAS ENSBTAP00000026883/1-272 VYTLRQQKKM YPQLTFASVC KKYMKNDVSK KSGSDSPTSQ MIWEPLTLSS ENSTTRP00000012753/1-271 VCALRKQKKM YPQLNFAPVC KRDLRSDXXX XXXXXXXXXX XXXXXXXXXX bmy_12012T0/1-293 VCALRKQKKM YPQLNFAPVC KRDLRSDVSK KSGSDLPTSQ IIWEPLTLSS BACU006790/1-259 VYALRKQKKM YPQLNFAPVC KRDLRSDVSK KSGNDLPTSQ MIWEPLTLSS 251 300 ENSP00000406047/1-275 LLEDMPTRTA PGESAFRNGR APQWIIKK-- ---------- ------ATVI ENSBTAP00000026883/1-272 LLEKKPTRTA PGESEFRNGR AQQWFIKS-- ---------- ------ATVI ENSTTRP00000012753/1-271 XXXEKPTRA- -GES-VRNGR AQQWIIKN-- ---------- ------ASVI bmy_12012T0/1-293 LLEEKPTRTA PGESAFRNGR AQQWIIKNDE SKPYMPLASS PETEGPGEVA BACU006790/1-259 LLEEKPTRTA PGESAFRNGR AQQWIIKNDE SKPYMPLASS PETEGPGEVA 301 350 ENSP00000406047/1-275 G ENSBTAP00000026883/1-272 K ENSTTRP00000012753/1-271 K bmy_12012T0/1-293 I BACU006790/1-259 I