KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:46 2014 Check: 00 .. Name: ENSTTRP00000006605/1-1292 Len: 1554 Check: 8558 Weight: 1.00 Name: ENSP00000359299/1-1508 Len: 1554 Check: 2426 Weight: 1.00 Name: bmy_05408T0/1-788 Len: 1554 Check: 7580 Weight: 1.00 Name: ENSBTAP00000026887/1-1456 Len: 1554 Check: 6013 Weight: 1.00 Name: BACU002806/1-1440 Len: 1554 Check: 1551 Weight: 1.00 // 1 50 ENSTTRP00000006605/1-1292 ---------- ---------- ---------- ---------- ---------- ENSP00000359299/1-1508 XFEFCAAGVR WFSELCPRLP RAGARERVRG FLTQTRVRSA QSPGGSLPSD bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 ---------- ---------- ---------- ---------- ---------- BACU002806/1-1440 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006605/1-1292 ---------- ---------- ---------- ---------- ---------- ENSP00000359299/1-1508 DLGEMESSSS DYYNKDNEEE SLLANVASLR HELKITEWSL QSLGEELSSV bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 ----MESSSS DFYNKDNEEE SLLANVASLR HELKITEWSL QSLGEELSSV BACU002806/1-1440 ----MESSSS DYYNKDNEEE SLLANVASLR HELKITEWSL QSLGEELSSV 101 150 ENSTTRP00000006605/1-1292 ---------- ---------- ---------- ---------- ---------- ENSP00000359299/1-1508 SPSENSDYAP NPSRSEKLIL D--VQPSHPG LLNYSPYENV CKISGSSTDF bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 SPSENSDYAP NLSRSERLIL ENLSHPSHLG LLNYSPHNRV CKMPNSGTDF BACU002806/1-1440 SPSENSHYAS SLSRSERLVL EDLSQPSQLG LLNYSPYKKV CKMPNSGTDF 151 200 ENSTTRP00000006605/1-1292 ---------- ---------- ---------- ---------- ---------- ENSP00000359299/1-1508 QKKPRDKM-F SSSAPVDQEI KSLREKLNKL RQQNACLVTQ NHSLMTKFES bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 QKKPRDKMSF SSSTPVDQEI KSLREKLNKL RQQNACLVSQ NHSLMTKIES BACU002806/1-1440 QKKPRDKMSF SSSTPVDQEI KSLREKLNKL RQQNACLVSQ NHSLMTKIES 201 250 ENSTTRP00000006605/1-1292 ---------- -VSMLESAQQ QAAIVPILEE QIINLEAEVS AQDKVLREAE ENSP00000359299/1-1508 IHFELTQSRA KVSMLESAQQ QAASVPILEE QIINLEAEVS AQDKVLREAE bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 VHFELTQSRA KVSMLESAQK QAANVPILEE QIINLEAEVS AQDKVLREAE BACU002806/1-1440 VHFELTQSRA KVSVLESAQQ QAANVPILEE QIINLEAEVS AQDKVLREAE 251 300 ENSTTRP00000006605/1-1292 DKLQQSQKMV TEKEQSLQKS QEECIKLKVD LFEQSKQGKR AEQQRNEALY ENSP00000359299/1-1508 NKLEQSQKMV IEKEQSLQES KEECIKLKVD LLEQTKQGKR AERQRNEALY bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 DKLEQSQKMV IEKEQSLQKS QEECIRLKVD LLEQSKQGKR AERQRNEALY BACU002806/1-1440 DKLEQSQKMV TEKEQSLQKS QEECIKLKVD LLEQSKQRKR AERQRNEALY 301 350 ENSTTRP00000006605/1-1292 NAEELSKAFQ HYEEKMAEKL EKVQAEEAIL EKNLINCEKE NKRLQEECGL ENSP00000359299/1-1508 NAEELSKAFQ QYKKKVAEKL EKVQAEEEIL ERNLTNCEKE NKRLQERCGL bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 NAEELSKAFQ HYKEKVAEKL EKVQAEEEIL EKNLINCEKE NKRLQEKCGL BACU002806/1-1440 NAEELSKAFQ HYKEKVAEKL EKVQAEEAIL EKNLINCEKE NKRLQEKCGL 351 400 ENSTTRP00000006605/1-1292 YKSELEILKE KLRQLKEENN NGKEKLRIMA VKNSEVMAQL TESRQSILKL ENSP00000359299/1-1508 YKSELEILKE KLRQLKEENN NGKEKLRIMA VKNSEVMAQL TESRQSILKL bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 YKNELEILKE KLRQLKEENN NGKEKLRIMA VKNSEVMAQL TESRQSILKL BACU002806/1-1440 YKSELEILKE KLRQLQEENN NGKEKLRIMA VKNSEVMAQL TESRQSILKL 401 450 ENSTTRP00000006605/1-1292 ESELEDKDEI LREKFSLMNE NRELKVRIAT QNERLDLCQQ EIESSRVELR ENSP00000359299/1-1508 ESELENKDEI LRDKFSLMNE NRELKVRVAA QNERLDLCQQ EIESSRVELR bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 ESDLEDKDEI LREKFSLMNE NRELKVRIAT QNERLDLCQQ EIESSRVELR BACU002806/1-1440 ESELEDKDEI LREKFSLMNE NRELKVRIVT QNERLDLCQQ EIESSRVELR 451 500 ENSTTRP00000006605/1-1292 SLEKIMSQLP LKREMFGFKS SLSKHQMSIL SNKEDSYIGC CETNKMVISE ENSP00000359299/1-1508 SLEKIISQLP LKRELFGFKS YLSKYQMSSF SNKEDRCIGC CEANKLVISE bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 SLEKIMSQLP LKREIFGFKS PLSKHQMSSL SNKQDSYIGC CETNKMVISE BACU002806/1-1440 SLEKIMSQLP LKREMFGFKS SLSKHQMSIL SNKEDSYIGC CETNKTVISE 501 550 ENSTTRP00000006605/1-1292 LRIKLAMKEA EIQKLQANLT ANQLSHNLIA SNDNQESGKL NSLETEPVKL ENSP00000359299/1-1508 LRIKLAIKEA EIQKLHANLT ANQLSQSLIT CNDSQESSKL SSLETEPVKL bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 LRIKLAIKEA EIQKLQANLT ANQLSHNLTA CNDYQEGRKL NSLEIEPVKL BACU002806/1-1440 LRIKLAMKEA EIQKLQANLT ANQLSHNLIA SNDNQESGKL NSLETEPVKL 551 600 ENSTTRP00000006605/1-1292 GGNQVESIKD QNQHTVNKQY ERERQRLASG IEELRDKLMQ IEAENSDLKV ENSP00000359299/1-1508 GGHQVESVKD QNQHTMNKQY EKERQRLVTG IEELRTKLIQ IEAENSDLKV bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 -GNQVESLKD QNQHTMNKQY ERERQRLASG IEELRDKLMQ IEAENSDLKV BACU002806/1-1440 GGNQVESIKV QNQHTVNKQY ERERQRLASG IEELRDKLMQ IEAENSDLKV 601 650 ENSTTRP00000006605/1-1292 NMAHRTSQFQ LIQEELLEKA SNSSKLESEM TKKCSQLLTL EKQLEEKIVA ENSP00000359299/1-1508 NMAHRTSQFQ LIQEELLEKA SNSSKLESEM TKKCSQLLTL EKQLEEKIVA bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 NMAHRTSQFQ LIQEELLEKA SNSSKLESEM TKKCSQLLTL EKQLEEKIVA BACU002806/1-1440 NMAHRTSQFQ LIQEELLEKA SNSSKLESEM TKKCSQLLTL EKQLEEKIVA 651 700 ENSTTRP00000006605/1-1292 YSSIAAKNAE LEQELMEKNE KVRSLETNIN TEHEKICLAF EKAKKIHLDQ ENSP00000359299/1-1508 YSSIAAKNAE LEQELMEKNE KIRSLETNIN TEHEKICLAF EKAKKIHLEQ bmy_05408T0/1-788 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026887/1-1456 YSSIAAKNAE LEQELMEKNE KIRSLETNIN TEHEKICLAF EKAKKIHLDQ BACU002806/1-1440 YSSIAAKNTE LEQELMEKNE KIRSLETNIN TEHEKICLAF EKAKKIHLDQ 701 750 ENSTTRP00000006605/1-1292 HKEMEKQIER XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359299/1-1508 HKEMEKQIER LEAQLEKKDQ QFKEQEKTMS MLQQDIICKQ HHLESLDRLL bmy_05408T0/1-788 ---------- ---------- --------MS MLQQDIICKQ HHLESLDRLL ENSBTAP00000026887/1-1456 HKEMEKQIER LESQLDKKEQ QFKEQEKTMS MLQQDIICKQ HHLESLDRLL BACU002806/1-1440 HKEMEKQIER LESQLEKKEQ QFKEQEKTMS MLQQDIICKQ HHLESLDRLL 751 800 ENSTTRP00000006605/1-1292 XXXXXEMEKE NMKKDEALKT LQNQVSEETI K-----VRQL DSALEICKEE ENSP00000359299/1-1508 TESKGEMKKE NMKKDEALKA LQNQVSEETI K-----VRQL DSALEICKEE bmy_05408T0/1-788 TESKGEMEKE NMKKDEALKT LQNQVSEETI KATSHLVRQL DSALEICKEE ENSBTAP00000026887/1-1456 TESKGEMEKE NMKKDEALKA LQNQVSEETI K-----VRQL DSALEICKEE BACU002806/1-1440 TESKG----- ---------- ---------- ------VRQL DSALEICKEE 801 850 ENSTTRP00000006605/1-1292 LALHLNQLEG NKEKFEKQLK KKSEEVYCLQ KELKIKNHSL QETTEQNVIL ENSP00000359299/1-1508 LVLHLNQLEG NKEKFEKQLK KKSEEVYCLQ KELKIKNHSL QETSEQNVIL bmy_05408T0/1-788 LALHLNQLEG NKEKFEKQLK KKSEEVYCLQ KELKIKNHSL QETTEQNVIL ENSBTAP00000026887/1-1456 LALHLNQLEG NKEKFEKQLK KKSEEVYCLQ KELKIKNHSL QETAEQNVIL BACU002806/1-1440 LALHLNQLEG NKEKFEKQLK KKSEEVYCLQ KELKIKNHSL QETTEQNVIL 851 900 ENSTTRP00000006605/1-1292 QHTLQQQQQM LQQETFRNGE LEDIQTKLEK QVSKLEQELQ KQRESSAEKL ENSP00000359299/1-1508 QHTLQQQQQM LQQETIRNGE LEDTQTKLEK QVSKLEQELQ KQRESSAEKL bmy_05408T0/1-788 QHTLQQQQQM LQQETIRNGE LEDIQTKLEK QVSKLEQELQ KQRESSAEKL ENSBTAP00000026887/1-1456 QHTLQQQQQM LQQETIRNEE LEDIQTKLEK QISKLEQELQ KQRESSAEKL BACU002806/1-1440 QHTLQQQQQM LQQETIRNGE LEDIQTKLEK QVSKLEQELQ KQRESSAEKL 901 950 ENSTTRP00000006605/1-1292 RKMEEKCEAA TYEADLKRQK VIELTGTARQ VKLEMDHYKE ELYKMEKEIK ENSP00000359299/1-1508 RKMEEKCESA AHEADLKRQK VIELTGTARQ VKIEMDQYKE ELSKMEKEIM bmy_05408T0/1-788 RKMEEKCEAA TYEADLKRQK VIELTGTARQ VKLEMDHYKE ELYKMEKEXK ENSBTAP00000026887/1-1456 RKMEEKCEAA TYEADLKRQK IIELTGTTRQ VKLEMDQYKE ELSKMEKEIM BACU002806/1-1440 RKMEEKCEAA TYEADLKRQK VIELTGTARQ VKLEMDHYKE ELYKMEKEIK 951 1000 ENSTTRP00000006605/1-1292 HLKRDGENKA MHLSQLDMIL EQTKTELDKK TNAVKELEKL QHHTETELTE ENSP00000359299/1-1508 HLKRDGENKA MHLSQLDMIL DQTKTELEKK TNAVKELEKL QHSTETELTE bmy_05408T0/1-788 HLKRDGENKA MHLSQLDMIL EQTKTELDKK TNAVKELEKL QHHTETELTE ENSBTAP00000026887/1-1456 HLKRDGENKA MHVSQLDMIL EQTKTELDKK TNAVKDLEKL QHHTETELTE BACU002806/1-1440 HLKRDGENKA MHLSQLDMIL EQTRTELDKK TNAVKELEKL QHHTETELTE 1001 1050 ENSTTRP00000006605/1-1292 ALQKREVLET ELQNAHGELK STLRQLQELR DVLQKAQLSL EEKYTAITDL ENSP00000359299/1-1508 ALQKREVLET ELQNAHGELK STLRQLQELR DVLQKAQLSL EEKYTTIKDL bmy_05408T0/1-788 ALQKREVLET ELQNAHGELK STLRQLQELR DVLQKAQLSL EEKYTTIKDL ENSBTAP00000026887/1-1456 ALQKREALET ELQNAHGELK STLRQLQELR DVLQKAQLSL EEKYTTIKDL BACU002806/1-1440 ALQKREVLET ELQNAHGELK STLRQLQELR DVLQKAQLSL EEKYTTIKDL 1051 1100 ENSTTRP00000006605/1-1292 TAELTECKME IEDKKQELLE MDQALKERNW ELKQRAAQXX XXXXXXXXXX ENSP00000359299/1-1508 TAELRECKME IEDKKQELLE MDQALKERNW ELKQRAAQVT HLDMTIREHR bmy_05408T0/1-788 TAELRECKME IEDKKQELLE MDQALKERNW ELKQRAAQVT HLDMTIREYR ENSBTAP00000026887/1-1456 TAELRECKME IEDKKQELLE MDQALKERNW ELKQRAAQVT HLDMTIRGHR BACU002806/1-1440 TAELRYTSV- ---------- ---------- --------VT HLDMTIREYR 1101 1150 ENSTTRP00000006605/1-1292 XXXXXXXXXX XXXXXXXXXX XXXXXXXIEG LNEKLQNAKE QLREKEFITL ENSP00000359299/1-1508 GEMEQKIIKL EGTLEKSELE LKECNKQIES LNDKLQNAKE QLREKEFIML bmy_05408T0/1-788 GEMEQKIIKL EGTVEKSELE IKESNKQIEA LNEKLQNAKE QLREKEFITL ENSBTAP00000026887/1-1456 GEMEQKIIKL EGTVEKSELE LKESSRQIES LNEKLQNSKE QLREKEFITL BACU002806/1-1440 GEMEQKIIKL EGTVEKSELE LKESNKQIEA LNEKLQNAKE QLREKEFITL 1151 1200 ENSTTRP00000006605/1-1292 QNEQEISQLK KETERTKEKM KEMEIVMKEQ EQYIATQYKE AIDLEQELRL ENSP00000359299/1-1508 QNEQEISQLK KEIERTQQRM KEMESVMKEQ EQYIATQYKE AIDLGQELRL bmy_05408T0/1-788 QNEQEISQLK KETERTQEKM KEMESVMKEQ EQYIATQYKE AIDLEQELRL ENSBTAP00000026887/1-1456 QNEQEISQLK KETERTQQKM KEMESVMKEQ EQYIATQYKE AIDLEQELRL BACU002806/1-1440 QNEQEISQLK KETERTQEKM KEMESVMKEQ EQYIATQYKE AIDLEQELRL 1201 1250 ENSTTRP00000006605/1-1292 SREHLQNSHT ELVEAHRQQV QAQREVERLS SELEEIKQLS KEKEAHGKHL ENSP00000359299/1-1508 TREQVQNSHT ELAEARHQQV QAQREIERLS SELEDMKQLS KEKDAHGNHL bmy_05408T0/1-788 TREQMQNSHT ELVEARRQQV QAQREVERLS SELEEIKQLS KEKEAHGKHL ENSBTAP00000026887/1-1456 TREQMQNSHK ELVEARHQQV QAQREIERLS SELEEIKQLS KEKEAHGKYL BACU002806/1-1440 TREQMQNSHT ELVEARRQQV QAQREVERLS SELEEIKQLS KEKESHGKHL 1251 1300 ENSTTRP00000006605/1-1292 AEELGASQVR EAQLEVRMQA EIKKLSAEVE SVKEAYHLEX XXXXXXXXXX ENSP00000359299/1-1508 AEELGASKVR EAHLEARMQA EIKKLSAEVE SLKEAYHMEM ISHQENHAKW bmy_05408T0/1-788 AEELGASQVR EAQLEARMQA EIKKLSAEVE SVKEAYHLEL ISHQEKHAKW ENSBTAP00000026887/1-1456 AEELGASQVR ETQLEARMQA EIKKLSTEVE SLKEAYHLEM ISHQENHAKW BACU002806/1-1440 AEELGASQVR EAQLEARMQA EIKKLSAEVE SVKEAYHLEM ISHQEKHAKW 1301 1350 ENSTTRP00000006605/1-1292 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359299/1-1508 KISADSQKSS VQQLNEQLEK AKLELEEAQD TVSNLHQQVQ DRNEVIEAAN bmy_05408T0/1-788 KITADSQKTS VQQLNEQLEK AKLELEEAQD TVSNLHQQVQ DRNEVIEATN ENSBTAP00000026887/1-1456 KISVDSQKTS VQQLNEQLEK AKLELEEAQD TVSSLHQQVQ DRNEVIEATN BACU002806/1-1440 KITADSQKTS VQQLNEQLEK AKLELEEAQD TVSNLHQQVK DRNEVIEATN 1351 1400 ENSTTRP00000006605/1-1292 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359299/1-1508 EALLTKESEL TRLQAKISGH EKAEDIKFLP APFTSPTEIM PDVQDPKFAK bmy_05408T0/1-788 EALLIKESEL TRLQAKISGH ERAEDIKFLP APFTSPVEIA PDIQDSKFAK ENSBTAP00000026887/1-1456 EALLIKRLHI VTLYITIFGH ERAEDIKFLP APFTSPVEIT PDIQDSKLAK BACU002806/1-1440 EALLIKESEL TRLQAKISGH ERAEDIKFLP APFTSPVEIA PDIQDSKFAK 1401 1450 ENSTTRP00000006605/1-1292 XXXXXXXXXX XXXXXXXXXX XXXXXXXDED L--ELLQD-K KMK----QST ENSP00000359299/1-1508 CFHTSFSKCT KLRRSISASD LTFKIHGDED LSEELLQDLK KMQLEQPSTL bmy_05408T0/1-788 HSHTAFFKCR KLRRSISASD LSFRTRSDED LSEELLQDLK KMQLEQPSTL ENSBTAP00000026887/1-1456 HSHTAFFKCR KLRRSISASD LSFRTHSDED LSEELLQDLK KMQLEQPSTL BACU002806/1-1440 HSHTAFFKCR KLRRSISASD LSFRTRSDED LSEELLQDLK KMQLEQPSTL 1451 1500 ENSTTRP00000006605/1-1292 EESQKDLTYT QSDSFKPLPY D-EDDSSENN DFSTLSGMLK YINKEVRLLK ENSP00000359299/1-1508 EESHKNLTYT QPDSFKPLTY NLEADSSENN DFNTLSGMLR YINKEVRLLK bmy_05408T0/1-788 EESQKDLTYT QSDSFKPLPY DLEDDSSENN DFSTLSGMLR YINKEVRLLK ENSBTAP00000026887/1-1456 EENQRDLPYT QSDSFKPLTY DLNDDNSENN DFSTLSGMLR YINKEVRLLK BACU002806/1-1440 EESQKDLTYT QSDSFKPLPY DLEDDSSENN DFSTLSGMLR YINKEVRLLK 1501 1550 ENSTTRP00000006605/1-1292 KSSMQTGAGS TQ-------- ---------- ----GENL-- ---------- ENSP00000359299/1-1508 KSSMQTGAGL NQ-------- ---------- ----GENV-- ---------- bmy_05408T0/1-788 KSSMQTGAGS TQ-------- ---------- ----GENL-- ---------- ENSBTAP00000026887/1-1456 KSSMQTGAGS TQ-------- ---------- ----GKNV-- ---------- BACU002806/1-1440 KSSMQTGAGS TQVCILYIRS YNNLSPISII LFSVGKKPIR LNEALMPLGD 1551 1600 ENSTTRP00000006605/1-1292 ---- ENSP00000359299/1-1508 ---- bmy_05408T0/1-788 ---- ENSBTAP00000026887/1-1456 ---- BACU002806/1-1440 VHKY