KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:48 2014 Check: 00 .. Name: ENSP00000406261/1-875 Len: 875 Check: 465 Weight: 1.00 Name: ENSBTAP00000026900/1-874 Len: 875 Check: 1677 Weight: 1.00 Name: ENSTTRP00000010785/1-874 Len: 875 Check: 4241 Weight: 1.00 Name: bmy_12935T0/1-529 Len: 875 Check: 5581 Weight: 1.00 Name: BACU014303/1-823 Len: 875 Check: 5417 Weight: 1.00 // 1 50 ENSP00000406261/1-875 MESTLTLATE QPVKKNTLKK YKIACIVLLA LLVIMSLGLG LGLGLRKLEK ENSBTAP00000026900/1-874 MQSTLNLSTE EPVKRNTVKK YKIICIVLLI LLVAVSLALG LVAGLRQQEE ENSTTRP00000010785/1-874 MDSTLGLSTE EPVMRNTVKK YKIICIVLLT LLVAVSLALG LVAGLRQHEE bmy_12935T0/1-529 ---------- ---------- ---------- ---------- ---------- BACU014303/1-823 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000406261/1-875 QGSCRKKCFD ASFRGLENCR CDVACKDRGD CCWDFEDTCV ESTRIWMCNK ENSBTAP00000026900/1-874 QGSCRKKCFD ASHRGLEGCR CDAGCKGRGD CCWDFEDTCV QSTQIWTCNK ENSTTRP00000010785/1-874 QGSCRKKCFD ASHRGLEGCR CDVQCKGRGD CCWDFEDTCV GPTRIWTCNK bmy_12935T0/1-529 ---------- ---------- -------MGN V--------- ---------- BACU014303/1-823 QESCRKKCFD ASHRGIEGCR CDVGCKGRGD CCWDFEDTCV ESTRIWTCNK 101 150 ENSP00000406261/1-875 FRCGETRLEA SLCSCSDDCL QRKDCCADYK SVCQGETSWL EENCDTAQQS ENSBTAP00000026900/1-874 FRCGETRLES SLCSCSDDCL QRKDCCADYK SVCQGETSWV DEDCSTAQQP ENSTTRP00000010785/1-874 FRCGETRLES SLCSCSDDCL QKKDCCADYK SVCQGDTSWV EEECGTAQQP bmy_12935T0/1-529 FLC------- ---------- ---------- ---------- ---------- BACU014303/1-823 FRCGETRLES SFCSCSDDCL QKKDCCADYK SVCQGETSWV EEECGTAQQP 151 200 ENSP00000406261/1-875 QCPEGFDLPP VILFSMDGFR AEYLYTWDTL MPNINKLKTC GIHSKYMRAM ENSBTAP00000026900/1-874 QCPEGFDLPP VILFSMDGFR AEYLQTWSTL VPNINKLKTC GVHSQYLRPA ENSTTRP00000010785/1-874 QCPEGFDLPP VILFSMDGFR AEYLQTWGSL IPNINKLKTC GIHSKYLRPV bmy_12935T0/1-529 -----FNFTP ---------- ---------- ---------- ---------- BACU014303/1-823 QCPEGFDLPP VILFSMDGFR AEYLQTWGTL IPNINKLKTC GIHSKYLRPA 201 250 ENSP00000406261/1-875 YPTKTFPNHY TIVTGLYPES HGIIDNNMYD VNLNKNFSLS SKEQNNPAWW ENSBTAP00000026900/1-874 YPTKTFPNHY TIVTGLYPES HGIIDNNMYD INLNKNFSLS SKEKDNPAWW ENSTTRP00000010785/1-874 YPTKTFPNHY TIVTGLYPES HGIIDNKMYD VHLNKNFSLS SEEKNNPVWW bmy_12935T0/1-529 ---------- ---------- ---------- ---------- ---------- BACU014303/1-823 YPTKTFPNHY TIVTGLYPES HGIIDNNMYD VYLNKKFSLS SKEKDNPVWW 251 300 ENSP00000406261/1-875 HGQPMWLTAM YQGLKAATYF WPGSEVAING SFPSIYMPYN GSVPFEERIS ENSBTAP00000026900/1-874 QGQPIWLTAM YQGLKVGTYF WPGSDVAING TFPSIYKIYN RSVTYEERIF ENSTTRP00000010785/1-874 HGQPIWLTAM YQGLKAGTYF WPGSDVAING TFPSIYRTYN RSVTYEERVF bmy_12935T0/1-529 ---------- ---------- ---------- ---------- ---------- BACU014303/1-823 HGQPIWLTAM YQGLKAGTYF WPGSDVAING TFPSIYRIYN RSVTYEERVF 301 350 ENSP00000406261/1-875 TLLKWLDLPK AERPRFYTMY FEEPDSSGHA GGPVSARVIK ALQVVDHAFG ENSBTAP00000026900/1-874 TLLKWLDLPK AERPDFYTIY VEEPDSQGHN YGPVSAGVIQ ALQLVDKTFG ENSTTRP00000010785/1-874 TLLKWLDLPK AERPDFYTIY VEQPDSAGHA QGPVSAAVIQ ALQLVDYTFG bmy_12935T0/1-529 ---------- --RPDFYTIY VEQPDSAGHA QGPVSAAVIQ ALQSVDHTFG BACU014303/1-823 TLLKWLDLPK AERPDFYTIY VEQPDSAGHA QGPVSGAVIQ ALQLVDYTFG 351 400 ENSP00000406261/1-875 MLMEGLKQRN LHNCVNIILL ADHGMDQTYC NKMEYMTDYF PRINFFYMYE ENSBTAP00000026900/1-874 LLMEGLKQRN LVNCVNIILL ADHGMDQTYC DKLEYMADYF SSIN-FYMFE ENSTTRP00000010785/1-874 LLMEGLKQRN LVNCVNIILL AEHGMDQTYC DKVEYMTNYF SQTN-FYMYG bmy_12935T0/1-529 LLMEGLKQRN LVNCVNIILL ADHGMDQTYC DKVEYMTNYF SQVN-FYMYE BACU014303/1-823 LLMEGLKQRN LVNCVNIILL ADHGMDQTYC DKVEYMTNYF SQVN-FYMYE 401 450 ENSP00000406261/1-875 GPAPRIRAHN IPHDFFSFNS EEIVRNLSCR KPDQHFKPYL TPDLPKRLHY ENSBTAP00000026900/1-874 GPAPRIRTRN IPQDFFTFNS EEIVRNLSCR KPDQHFKPYL SPDLPKRLHF ENSTTRP00000010785/1-874 GPAPRIRTLN IPHDFFTFNS EEIVRNLSCR KPDQHFTPYL TPDLPKRLHY bmy_12935T0/1-529 GPAPRIRSRN VPHDFFTFNS EEIVRNLSCR KPDQHFTPYL TPDLPKRLHY BACU014303/1-823 GPAPRIRSHN VPHDFFTFNS EEIVRNLSCR KPDQHFTPYL TPDLPKRLHY 451 500 ENSP00000406261/1-875 AKNVRIDKVH LFVDQQWLAV RSKSNTNCGG GNHGYNNEFR SMEAIFLAHG ENSBTAP00000026900/1-874 AKNVRIDKVN LLVDRQWQAV RNRAYSYCGG GNHGYDNEFK SMEAIFLAHG ENSTTRP00000010785/1-874 AKNVRIDKAH LLMDRQWQAV RTKPFSSCGG GNHGYNNEFK SMEAIFLAHG bmy_12935T0/1-529 AKNVRIDKAH LLVDRQWLAV RS-------- ---------- ---AIFLAHG BACU014303/1-823 AKNVRIDKAH LLVDRQWLAV RTKAFS-CGG GNHGYNNEFK SMEAIFLAHG 501 550 ENSP00000406261/1-875 PSFKEKTEVE PFENIEVYNL MCDLLRIQPA PNNGTHGSLN HLLKVPFYEP ENSBTAP00000026900/1-874 PSFKQKTEVE PFDNIEVYNL LCDLLHIQPA PNNGTHGSLN HLLKVPFYEP ENSTTRP00000010785/1-874 PSFKQQTEVE PFDNIEIYNL MCDLLHIQPA PNNGTHGSLN YLLKVPFYEP bmy_12935T0/1-529 PSFKQQTEVE PFDNIEIYNL MCDLLHIQPA PNNGTHGSLN CLLKVPFYEP BACU014303/1-823 PSFKQQTEVE PFDNIEVYNL MCDLLHIQPA PNNGTHGSLN YLLKVPFYEP 551 600 ENSP00000406261/1-875 SHAEEVSKFS VCGFANPLPT ESLDCFCPHL QNSTQLEQVN QMLNLTQEEI ENSBTAP00000026900/1-874 SHAEELSKFS VCGFTVPLPT DTLGCSCSRL QTNSDLERVN QMLDLTQDEI ENSTTRP00000010785/1-874 SHAEEVSKFS VCGFTVPVPT DTLGCSCPEL QSSADLDRVN QMLNLTQAEI bmy_12935T0/1-529 SHAEEVSKLS VCGFTVPLPT DTLGCSCPGL QNNADLERVN QMLNLTQDER BACU014303/1-823 SHAEEVSKLS VCGFTVPLPT DTLGCSCPGL QNNADVERVN QMLNLTQGEI 601 650 ENSP00000406261/1-875 TATVKVNLPF GRPRVLQKNV DHCLLYHREY VSGFGKAMRM PMWSSYTVPQ ENSBTAP00000026900/1-874 TATEKLNLPF GRPRLIQKNK EPCLLYHREY VSGFDKTLRM PLWSSYTVPK ENSTTRP00000010785/1-874 KTTEKLNLPF GRPRVIQKNK ELCLLYHREY VSGFDKTSRM PLWSSYTVPK bmy_12935T0/1-529 Q--------- ---------- -----LLKEY ISGFDRTSRM PLWSSYTVPK BACU014303/1-823 TTTKKLNLPF GRPRVIQKNK EHCLLYHREY ISGFDKTSRM PLWSSYTVPK 651 700 ENSP00000406261/1-875 LGDTSPLPPT VPDCLRADVR VPPSESQKCS FYLADKNITH GFLYPPASNR ENSBTAP00000026900/1-874 PGDTSPLPPT VPDCLRADVR VAPSESQNCS FSLADKNITH GFLYPPANNR ENSTTRP00000010785/1-874 PGDTSPLPPT VPDCLRADVR IAPSESQNCS FSLADKNIAH GFLYPPANNR bmy_12935T0/1-529 PGDTSPLPPT VPDCLRADVR VPPSESQNFS FCLADKNITH GFLYPPANNR BACU014303/1-823 PGDTLPLPPT VPDCLRADVR VAPSESQNFS FCLADKNITH GFLYPPANNR 701 750 ENSP00000406261/1-875 TSDSQYDALI TSNLVPMYEE FRKMWDYFHS VLLIKHATER NGVNVVSGPI ENSBTAP00000026900/1-874 TSNSQYDALI TSNLVPMYEA FKTMWNYFHS VLLVKYAMER NGVNVVSGPV ENSTTRP00000010785/1-874 TSDSQYDALI TSNLVPMYEA FKTMWNYFHS VLLVKHAMER NGVNVVSGPI bmy_12935T0/1-529 TSDSQYDALI TSNLVPMYEA FKTMWNYFHN VLLVKHAMER NGVNVVSGPI BACU014303/1-823 TSDSQYDALI TSNLVPMYEA FKTMWNYFHS VLLVKHAMER NGVNVVSGPI 751 800 ENSP00000406261/1-875 FDYNYDGHFD APDEITKHLA NTDVPIPTHY FVVLTSCKNK SHTPENCPGW ENSBTAP00000026900/1-874 FDYDYDGHFD APDEIADYAV NTSVPIPTHY FVVLTSCKNQ SQTPDACTGW ENSTTRP00000010785/1-874 FDYNYDGHFD TPDEITEYVV NTSVPIPTHY FVVLTSCKNK SQTPNACPGW bmy_12935T0/1-529 FDYNYDGHFD APDEITEYVV NTSVPIPTHY FVVLTSCKNK TQTPDACPGW BACU014303/1-823 FDYNYDGHFD APDEITEYVV NTSVPIPTHY FVVLTSCKNK SQTPDACPGW 801 850 ENSP00000406261/1-875 LDVLPFIIPH RPTNVESCPE GKPEALWVEE RFTAHIARVR DVELLTGLDF ENSBTAP00000026900/1-874 LDVLPFVIPH RPTNVESCPE NKSESLWVEE RFNVHTARVR DVELLTGLDF ENSTTRP00000010785/1-874 LDVLPFVIPH RPTNVESCPG NKPEALWIEE RFNAHVARVR DVELLTGLDF bmy_12935T0/1-529 LDVLPFVIPH RPTNVESCPE NKPEALWIEE RFNAHVARVR DVELLTGLDF BACU014303/1-823 LDVLPFVIPH RPTNVESCPE NKPEALWIEE RFNAHVARVR DVELLTGLDF 851 900 ENSP00000406261/1-875 YQDKVQPVSE ILQLKTYLPT FETTI ENSBTAP00000026900/1-874 YQEKAQPVSE ILQLKTYLPV FETVI ENSTTRP00000010785/1-874 YQEKFQPVSE ILQLKTYLPT FETII bmy_12935T0/1-529 YQEKSQPVSE ILQLKTYLPT FETII BACU014303/1-823 YQEKEQPVSE ILQLKTYLPT FETII