KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:30:53 2014 Check: 00 .. Name: bmy_04312T0/1-475 Len: 955 Check: 5773 Weight: 1.00 Name: ENSP00000230449/1-924 Len: 955 Check: 7435 Weight: 1.00 Name: ENSBTAP00000026920/1-924 Len: 955 Check: 4913 Weight: 1.00 Name: BACU005095/1-929 Len: 955 Check: 5445 Weight: 1.00 Name: ENSTTRP00000001742/1-925 Len: 955 Check: 7922 Weight: 1.00 // 1 50 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 MSRSRQPPLV TGISPNEGIP WTKVTIRGEN LGTGPTDLIG LTICGHNCLL ENSBTAP00000026920/1-924 MSRSRQPPLV TGISPNEGIP WTKVTIRGEN LGTGPADLIG LTICGHNCLL BACU005095/1-929 MSRSRQPPLV TGISPNEGIP WTKVTIRGEN LGAEPADLIG LTICGHNCLL ENSTTRP00000001742/1-925 MSRTRQPPLV TGISPNEGIP WTKVTIRGEN LGTGPADLIG LTICGHNCLL 51 100 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 TAEWMSASKI VCRVGQAKND KGDIIVTTKS GGRGTSTVSF KLLKPEKIGI ENSBTAP00000026920/1-924 TAEWMSASKI VCRVGQAKND KGDIIVTTKS GGKGTSTVSF KLLKPEKIGI BACU005095/1-929 TAEWMSTSKI VCHVGQAKND KGDIIVTTKS GGKGTSTVSF KLLRPEKIGI ENSTTRP00000001742/1-925 TAEWMSASKI VCRVGQAKND KGDIIVTTKS GGKGTSTVSF KLLRPEKIGI 101 150 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 LDQSAVWVDE MNYYDMRTDR NKGIPPLSLR PANPLGIEIE KSKFSQKDLE ENSBTAP00000026920/1-924 LDQSAVWVDE MNYYDMRTDR NKGIPPLSLR PANPLGIEIE KGKFPQKDLE BACU005095/1-929 LDQSAVWVDE MNYYDMRTDR NKGIPPLSLR PANPLGIEIE KGKFPQKDLE ENSTTRP00000001742/1-925 LDQSAVWVDE MNYYDMRTDR NKGIPPLSLR PANPLGIEIE KGKFPQKDLE 151 200 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 MLFHGMSADF TSENFSAAWY LIENHSNTSF EQLKMAVTNL KRQANKKSEG ENSBTAP00000026920/1-924 MLFPGMSADF TSENFSAAWY LIENHSNTSF EQLKMAITHL KRQANKKSEG BACU005095/1-929 TLFPGMSADF TSENFSAAWY LIENHSNASF EQLKMAVTHL KRQANKKSEG ENSTTRP00000001742/1-925 MLFPGMSADF TSENFSAAWY LIENHSNTSF EQLKMAVTHL KRQANKKSEG 201 250 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 SLAYVKGGLS TFFEAQDALS AIHQKLEADG TEKVEGSMTQ KLENVLNRAS ENSBTAP00000026920/1-924 SLAYVKGGLS TFFEAQDALS AIHQKLEADG TEKVEGSMTQ KLENVLNRAS BACU005095/1-929 SLACVKGGLS TFFEAQDALS AIHQKLEADG TEKVEGSMTQ KLENVLNRAS ENSTTRP00000001742/1-925 SLACVKGGLS TFFEAQDALS AIHQKLEADG TEKVEGSMTQ KLENVLNRAS 251 300 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 NTADTLFQEV LGRKDKADST RNALNVLQRF KFLFNLPLNI ERNIQKGDYD ENSBTAP00000026920/1-924 NTADTLFQEV LGRKDKADST RNALNVLQRF KFLFNLPLNI ERNIQKGDYD BACU005095/1-929 NTADTLFQEV LGRKDKADST RNALNVLQRF KFLFNLPLNI ERNIQKGDYD ENSTTRP00000001742/1-925 NTADTLFQEV LGRKDKADST RNALNVLQRF KFLFNLPLSI ERNIQKGDYD 301 350 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- ---------- ENSP00000230449/1-924 VVINDYEKAK SLFGKTEVQV FKKYYAEVET RIEALRELLL DKLLETPSTL ENSBTAP00000026920/1-924 VVINDYEKAK SLFGKTEVQV FKKYYAEVET RIEALRELLL EKLLETPSTL BACU005095/1-929 VVINDYEKAK SLFGKTEVQV FKKYYAEVET RIEALRELLL DKLLETPSTL ENSTTRP00000001742/1-925 VVINDYEKAK SLFGKTEVQV FKKYYAEVET RIEALRELLL DKLLETPSTL 351 400 bmy_04312T0/1-475 ---------- ---------- ---------- ---------- -------GPP ENSP00000230449/1-924 HDQKRYIRYL SDLHASGDPA WQCIGAQHKW ILQLMHSCKE GYVKDLKGNP ENSBTAP00000026920/1-924 HDQKRYIRYL SDLHAPGDPA WQCIGAQHRW ILQLMHGCRE GCVRDLKGPP BACU005095/1-929 HDQKRYIRYL SDLHAPGDPA WQCIGAQHRW ILQLMHSCQE GCVRDLKGPP ENSTTRP00000001742/1-925 HDQKRYIRYL SDLHAPGDPA WQCIGAQHRW ILQLMHSCQE GCVRDLKGPP 401 450 bmy_04312T0/1-475 GLHSATLDLD GDVRASVPGH LGQTASLKRG SSFQPGRDDA WRYQTPHRVA ENSP00000230449/1-924 GLHSPMLDLD NDTRPSVLGH LSQTASLKRG SSFQSGRDDT WRYKTPHRVA ENSBTAP00000026920/1-924 GLHSTSLDLD AEVRASAPSH LGQTASLKRG SSFQPGRDDA WRCKTPHRVA BACU005095/1-929 GLHSATLDLD GDVRASVPGH LGQTASLKRG SSFQPGRDDA WRYQTPHRVA ENSTTRP00000001742/1-925 GLHSATLDLD GDVRASVPGH LGQTASLKRG SNFQPGRDDA WRYQTPHRVA 451 500 bmy_04312T0/1-475 FVEKLTKLVL SQLPNFWKLW ISYVNGSLFS ETAEKSGHIE RSKNVRQRQN ENSP00000230449/1-924 FVEKLTKLVL SQLPNFWKLW ISYVNGSLFS ETAEKSGQIE RSKNVRQRQN ENSBTAP00000026920/1-924 FVEKLTKLVL SQLPNFWKLW ISYVNGSLFS ETAEKSGHIE RSKNVRQRQN BACU005095/1-929 FVEKLTKLVL SQLPNFWKLW ISYVNGSLFS ETAEKSGHIE RSKNVRQRQN ENSTTRP00000001742/1-925 FVEKLTKLVL SQLPNFWKLW ISYVNGSLFS ETAEKSGHIE RSKNVRQRQN 501 550 bmy_04312T0/1-475 DFKKMIQEVM HCLVKLLRGA LLPLSVAEGG GRQCRGWEVK AELSGQGLAH ENSP00000230449/1-924 DFKKMIQEVM HSLVKLTRGA LLPLSIRDGE AKQYGGWEVK CELSGQWLAH ENSBTAP00000026920/1-924 DFKKMIQEVM QCLVKLVRGA LLPLGAAEGS GRQLGGWEGK AELSGPWLAH BACU005095/1-929 DFKKMIQEVM HCLVKLLRGA LLPLSVAEGG GRQCRGWEVK AELSGQGLAH ENSTTRP00000001742/1-925 DFKKMIQEVM HCLVKLLRGA LLPLSVTEGG GRQCRGWEVK AELSGQGLAH 551 600 bmy_04312T0/1-475 AIQTLRLTYE SLTALEIPND LLQTIQDLIL DLRVRCVVVT LQHTAEEVKR ENSP00000230449/1-924 AIQTVRLTHE SLTALEIPND LLQTIQDLIL DLRVRCVMAT LQHTAEEIKR ENSBTAP00000026920/1-924 VIQTLRLTYE SLAALEIPND LLQTIQDLVL DLRVRCVLVT LQHTAEDIKR BACU005095/1-929 AIQTLRLTYE SLTALEIPND LLQTIQDLIL DLRVRCVVVT LQHTADEVKR ENSTTRP00000001742/1-925 AIQTLRLTYE SLTALEIPND LLQTIQDLVL DLRVRCVVVT LQHTAEEVKR 601 650 bmy_04312T0/1-475 LAEKEDWVVD SEGLTSLPCQ FERCVVHSLQ SLREVLECKP GEASVFQQPK ENSP00000230449/1-924 LAEKEDWIVD NEGLTSLPCQ FEQCIVCSLQ SLKGVLECKP GEASVFQQPK ENSBTAP00000026920/1-924 LAEKEDWVVD SEGLTSLPCR FERCVVLSLQ SLRGVLECKP GEASVFQHPK BACU005095/1-929 LAEKEDWVVD SEGLTSLPCQ FERCVVHSLQ SLRDVLECKP GEASVFQQPK ENSTTRP00000001742/1-925 LAEKEDWVVD SEGLTSLPCH FERCVVHSLQ SLREVLECKP GEASVFQQPK 651 700 bmy_04312T0/1-475 TQEEVCQLSI NIMQVFIYCL EQLSTKPDAD VDTAQALHAS HLLLLVTGPS ENSP00000230449/1-924 TQEEVCQLSI NIMQVFIYCL EQLSTKPDAD IDTT------ HLSVDVSSPD ENSBTAP00000026920/1-924 TQEEVCQLSI NIMQVFIYCL EQLSTKPDAD VDTA------ HLSVDVSSPD BACU005095/1-929 TQEEVCQLSV NIMQVFIYCL EQLSTKPDAD VDTA------ HLSVDVSSPD ENSTTRP00000001742/1-925 TQEEVCQLSI NIMQVFICCL EQLSTKPDAD VDTA------ HLSVDVSSPD 701 750 bmy_04312T0/1-475 VSHFTLLKLF QIWYQIQFLC FSPLDDTVLD LVQEQRLLIV LSNCCYLERH ENSP00000230449/1-924 L--------- ---------- FGSIHED-FS LTSEQRLLIV LSNCCYLERH ENSBTAP00000026920/1-924 L--------- ---------- FGSIHED-FS LTSEQRLLIV LSNCCYLERH BACU005095/1-929 L--------- ---------- FGSIHED-FS LTSEQRLLIV LSNCCYLERH ENSTTRP00000001742/1-925 L--------- ---------- FGSIHED-FS LTSEQRLLIV LSNCCYLERH 751 800 bmy_04312T0/1-475 TFRNIAEHFE KHNFQGVEKI TQVSMASLKE LDQRLFENYI ELKADPIVGS ENSP00000230449/1-924 TFLNIAEHFE KHNFQGIEKI TQVSMASLKE LDQRLFENYI ELKADPIVGS ENSBTAP00000026920/1-924 TFLNIAEHFE KHNFQGIEKI TQVSMASLKD LDQRLFESYI ELKADPIVGS BACU005095/1-929 TFRNIAEHFE KHNFQGVEKI TQVSMASLKE LDQRLFENYI ELKADPIVGS ENSTTRP00000001742/1-925 TFRNIAEHFE KHNFQGIEKI TQVSMASLKE LDQRLFENYI ELKADPIVGS 801 850 bmy_04312T0/1-475 LEPGIYAGYF DWKDCLPPT- --------VI DIIRRREDIY VIGD------ ENSP00000230449/1-924 LEPGIYAGYF DWKDCLPPTG VRNYLKEALV NIIAVHAEVF TISKELVPRV ENSBTAP00000026920/1-924 LEPGIYAGYF DWRDCLPPTG VRNYLKEALV NIIAVHAEVF TVSKDLVPRV BACU005095/1-929 LEPGIYAGYF DWKDCLPPTG VRNYLKEALV NIIAVHAEVF TISKDLVPRV ENSTTRP00000001742/1-925 LEPGIYAGYF DWKDCLPPTG VRNYLKEALV NIIAVHAEXX XXXXDLVPRV 851 900 bmy_04312T0/1-475 ---------- -----VSCAL VMGYFGTLSH LLLIET--DA SRANSTFEER ENSP00000230449/1-924 LSKVIEAVSE ELSRLMQCVS SFSKNGALQA RLEICALRDT VAVYLTPESK ENSBTAP00000026920/1-924 LSRVVEAVSE ELSRLMQCVS SFSRNGALQA RLEICTLRDT VAAHLTLESR BACU005095/1-929 LSRVVEAVSE ELSRLMQCVS SFSKNGALQA RLEICTLRDT VAAHLTPESR ENSTTRP00000001742/1-925 LSRVVEAVSE ELSRLMQCVS SFSKNGALQA RLEICTLRDT VAAHLTPESR 901 950 bmy_04312T0/1-475 HPRR------ ---------- ---------- ---------- ---------- ENSP00000230449/1-924 SSFKQALEAL PQLSSGADKK LLEELLNKFK SSMHLQLTCF QAASSTMMKT ENSBTAP00000026920/1-924 SSFKQALEAL PQLSSGADRK LLEELLSRVK SGMHLQLACF QAAPPPAVKT BACU005095/1-929 SSFKQALEAL PQLSSGADRK LLELLLSRVR SSVHLQLACF QATPPPAVKT ENSTTRP00000001742/1-925 SSFKQALEAL PQLSSGADRK LLELLLSRVR SGVHLQLACF QAAPPPAVKT 951 1000 bmy_04312T0/1-475 ----- ENSP00000230449/1-924 ----- ENSBTAP00000026920/1-924 ----- BACU005095/1-929 QVPSR ENSTTRP00000001742/1-925 Q----